RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 NBPF8Q3BBV2 869 aa20.04■□□□□ 0.8
LIG1-218ENST00000599322 GJD4Q96KN9 370 aaPredicted RBP20.04■□□□□ 0.8
LIG1-218ENST00000599322 TRPM1Q7Z4N2 1603 aa20.04■□□□□ 0.8
LIG1-218ENST00000599322 ITSN1Q15811 1721 aa20.02■□□□□ 0.8
LIG1-218ENST00000599322 CABP2Q9NPB3 220 aa20.02■□□□□ 0.8
LIG1-218ENST00000599322 RALGAPBQ86X10 1494 aa20.02■□□□□ 0.8
LIG1-218ENST00000599322 CLSPNQ9HAW4 1339 aa20.02■□□□□ 0.79
LIG1-218ENST00000599322 ALS2Q96Q42 1657 aa20.01■□□□□ 0.79
LIG1-218ENST00000599322 ATP7BP35670 1465 aa20.01■□□□□ 0.79
LIG1-218ENST00000599322 PLEKHG3A1L390 1219 aa20.01■□□□□ 0.79
LIG1-218ENST00000599322 UNC5CLQ8IV45 518 aa20.01■□□□□ 0.79
LIG1-218ENST00000599322 ACEP12821 1306 aa20■□□□□ 0.79
LIG1-218ENST00000599322 SLC24A1O60721 1099 aa19.99■□□□□ 0.79
LIG1-218ENST00000599322 CABLES1Q8TDN4 633 aa19.99■□□□□ 0.79
LIG1-218ENST00000599322 TIMELESSQ9UNS1 1208 aa19.99■□□□□ 0.79
LIG1-218ENST00000599322 NRAPQ86VF7 1730 aa19.99■□□□□ 0.79
LIG1-218ENST00000599322 CRYBG1Q9Y4K1 1723 aa19.99■□□□□ 0.79
LIG1-218ENST00000599322 QRICH2Q9H0J4 1663 aa19.98■□□□□ 0.79
LIG1-218ENST00000599322 PPIP5K1Q6PFW1 1433 aa19.97■□□□□ 0.79
LIG1-218ENST00000599322 CCER1Q8TC90 406 aaPredicted RBP19.96■□□□□ 0.79
LIG1-218ENST00000599322 POLR3AO14802 1390 aaPredicted RBP19.95■□□□□ 0.79
LIG1-218ENST00000599322 CABP1Q9NZU7 370 aa19.95■□□□□ 0.78
LIG1-218ENST00000599322 ABTB2Q8N961 1025 aa19.94■□□□□ 0.78
LIG1-218ENST00000599322 BRD4O60885 1362 aaPredicted RBP19.94■□□□□ 0.78
LIG1-218ENST00000599322 ZNF692Q9BU19 519 aaPredicted RBP19.93■□□□□ 0.78
LIG1-218ENST00000599322 CCDC9Q9Y3X0 531 aaKnown RBP19.93■□□□□ 0.78
LIG1-218ENST00000599322 CCDC125Q86Z20 511 aa19.92■□□□□ 0.78
LIG1-218ENST00000599322 COL14A1Q05707 1796 aaKnown RBP19.91■□□□□ 0.78
LIG1-218ENST00000599322 VPS72Q15906 364 aa19.91■□□□□ 0.78
LIG1-218ENST00000599322 NLRP13Q86W25 1043 aa19.91■□□□□ 0.78
LIG1-218ENST00000599322 SRCAPQ6ZRS2 3230 aa19.91■□□□□ 0.78
LIG1-218ENST00000599322 SBNO2Q9Y2G9 1366 aa19.9■□□□□ 0.78
LIG1-218ENST00000599322 FAM83GA6ND36 823 aa19.89■□□□□ 0.77
LIG1-218ENST00000599322 NUTM2GQ5VZR2 741 aa19.89■□□□□ 0.77
LIG1-218ENST00000599322 PRDM11Q9NQV5 511 aa19.89■□□□□ 0.77
LIG1-218ENST00000599322 TOPAZ1Q8N9V7 1692 aa19.88■□□□□ 0.77
LIG1-218ENST00000599322 BLMP54132 1417 aaPredicted RBP19.88■□□□□ 0.77
LIG1-218ENST00000599322 SEPT12Q8IYM1 358 aa19.88■□□□□ 0.77
LIG1-218ENST00000599322 ONECUT3O60422 494 aaPredicted RBP19.87■□□□□ 0.77
LIG1-218ENST00000599322 TMC1Q8TDI8 760 aa19.87■□□□□ 0.77
LIG1-218ENST00000599322 ZRANB1Q9UGI0 708 aa19.87■□□□□ 0.77
LIG1-218ENST00000599322 BTG4Q9NY30 223 aa19.86■□□□□ 0.77
LIG1-218ENST00000599322 PHRF1Q9P1Y6 1649 aaKnown RBP19.86■□□□□ 0.77
LIG1-218ENST00000599322 NLRP6P59044 892 aa19.85■□□□□ 0.77
LIG1-218ENST00000599322 HDGFL2Q7Z4V5 671 aaPredicted RBP19.85■□□□□ 0.77
LIG1-218ENST00000599322 ST20-MTHFSA0A0A6YYL1 179 aa19.84■□□□□ 0.77
LIG1-218ENST00000599322 ZC3H6P61129 1189 aaKnown RBP19.84■□□□□ 0.77
LIG1-218ENST00000599322 PUS7Q96PZ0 661 aaKnown RBP19.84■□□□□ 0.77
LIG1-218ENST00000599322 TERF2IPQ9NYB0 399 aa19.83■□□□□ 0.77
LIG1-218ENST00000599322 USP6P35125 1406 aa19.83■□□□□ 0.76
LIG1-218ENST00000599322 A0A0G2JS52 829 aa19.82■□□□□ 0.76
LIG1-218ENST00000599322 EVA1CP58658 441 aa19.82■□□□□ 0.76
LIG1-218ENST00000599322 MYT1Q01538 1121 aa19.82■□□□□ 0.76
LIG1-218ENST00000599322 DEFB132Q7Z7B7 95 aa19.82■□□□□ 0.76
LIG1-218ENST00000599322 KTN1Q86UP2 1357 aaKnown RBP19.82■□□□□ 0.76
LIG1-218ENST00000599322 TMF1P82094 1093 aa19.81■□□□□ 0.76
LIG1-218ENST00000599322 CDCA8Q53HL2 280 aa19.81■□□□□ 0.76
LIG1-218ENST00000599322 THSD7AQ9UPZ6 1657 aa19.81■□□□□ 0.76
LIG1-218ENST00000599322 TTC21AQ8NDW8 1320 aa19.8■□□□□ 0.76
LIG1-218ENST00000599322 KRT27Q7Z3Y8 459 aa19.8■□□□□ 0.76
LIG1-218ENST00000599322 KIAA0232Q92628 1395 aa19.8■□□□□ 0.76
LIG1-218ENST00000599322 RGPD1P0DJD0 1748 aa19.79■□□□□ 0.76
LIG1-218ENST00000599322 GCP02774 474 aa19.79■□□□□ 0.76
LIG1-218ENST00000599322 USP47Q96K76 1375 aa19.79■□□□□ 0.76
LIG1-218ENST00000599322 TTC21BQ7Z4L5 1316 aa19.78■□□□□ 0.76
LIG1-218ENST00000599322 ZBTB7CA1YPR0 619 aa19.78■□□□□ 0.76
LIG1-218ENST00000599322 CHRNA2Q15822 529 aa19.78■□□□□ 0.76
LIG1-218ENST00000599322 FAM98CQ17RN3 349 aaKnown RBP19.78■□□□□ 0.76
LIG1-218ENST00000599322 KCNH5Q8NCM2 988 aa19.78■□□□□ 0.76
LIG1-218ENST00000599322 STRN4Q9NRL3 753 aa19.77■□□□□ 0.76
LIG1-218ENST00000599322 USP19O94966 1318 aa19.76■□□□□ 0.75
LIG1-218ENST00000599322 TNS1Q9HBL0 1735 aaKnown RBP19.76■□□□□ 0.75
LIG1-218ENST00000599322 SPATA31A5Q5VU36 1347 aa19.76■□□□□ 0.75
LIG1-218ENST00000599322 SPATA31A7Q8IWB4 1347 aa19.76■□□□□ 0.75
LIG1-218ENST00000599322 NINLQ9Y2I6 1382 aa19.75■□□□□ 0.75
LIG1-218ENST00000599322 TESK2Q96S53 571 aa19.75■□□□□ 0.75
LIG1-218ENST00000599322 SLC12A5Q9H2X9 1139 aa19.75■□□□□ 0.75
LIG1-218ENST00000599322 CPDO75976 1380 aa19.74■□□□□ 0.75
LIG1-218ENST00000599322 SF3B2Q13435 895 aaKnown RBP19.74■□□□□ 0.75
LIG1-218ENST00000599322 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.74■□□□□ 0.75
LIG1-218ENST00000599322 CPSF1Q10570 1443 aaKnown RBP19.74■□□□□ 0.75
LIG1-218ENST00000599322 NRKQ7Z2Y5 1582 aa19.74■□□□□ 0.75
LIG1-218ENST00000599322 LRP5O75197 1615 aa19.72■□□□□ 0.75
LIG1-218ENST00000599322 SSH2Q76I76 1423 aa19.71■□□□□ 0.75
LIG1-218ENST00000599322 LMO7Q8WWI1 1683 aa19.71■□□□□ 0.75
LIG1-218ENST00000599322 SOX12O15370 315 aa19.7■□□□□ 0.74
LIG1-218ENST00000599322 FAM182BQ5T319 152 aa19.7■□□□□ 0.74
LIG1-218ENST00000599322 AKAP12Q02952 1782 aa19.68■□□□□ 0.74
LIG1-218ENST00000599322 USP35Q9P2H5 1018 aa19.68■□□□□ 0.74
LIG1-218ENST00000599322 SPATA31A1Q5TZJ5 1347 aa19.68■□□□□ 0.74
LIG1-218ENST00000599322 EDC4Q6P2E9 1401 aaKnown RBP19.68■□□□□ 0.74
LIG1-218ENST00000599322 BAG6P46379 1132 aa19.67■□□□□ 0.74
LIG1-218ENST00000599322 EIF4G2P78344 907 aaKnown RBP eCLIP19.67■□□□□ 0.74
LIG1-218ENST00000599322 CAMTA1Q9Y6Y1 1673 aa19.66■□□□□ 0.74
LIG1-218ENST00000599322 AATKQ6ZMQ8 1374 aa19.66■□□□□ 0.74
LIG1-218ENST00000599322 CSB-PGBD3P0DP91 1061 aa19.65■□□□□ 0.74
LIG1-218ENST00000599322 NME9Q86XW9 330 aa19.65■□□□□ 0.74
LIG1-218ENST00000599322 A0A1W2PP64 1363 aa19.65■□□□□ 0.74
LIG1-218ENST00000599322 SLIT3O75094 1523 aa19.65■□□□□ 0.74
LIG1-218ENST00000599322 EN1Q05925 392 aaPredicted RBP19.64■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms