RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 CABP2Q9NPB3 220 aa25.53■■□□□ 1.68
LIG1-216ENST00000598938 ITSN1Q15811 1721 aa25.53■■□□□ 1.68
LIG1-216ENST00000598938 PHF8Q9UPP1 1060 aa25.51■■□□□ 1.67
LIG1-216ENST00000598938 BLMP54132 1417 aaPredicted RBP25.51■■□□□ 1.67
LIG1-216ENST00000598938 ZEB1P37275 1124 aaPredicted RBP25.5■■□□□ 1.67
LIG1-216ENST00000598938 UNC5CLQ8IV45 518 aa25.5■■□□□ 1.67
LIG1-216ENST00000598938 NWD2Q9ULI1 1742 aa25.5■■□□□ 1.67
LIG1-216ENST00000598938 BRWD3Q6RI45 1802 aa25.49■■□□□ 1.67
LIG1-216ENST00000598938 SPATA31A3Q5VYP0 1347 aa25.49■■□□□ 1.67
LIG1-216ENST00000598938 CCDC61Q9Y6R9 512 aa25.49■■□□□ 1.67
LIG1-216ENST00000598938 XPCQ01831 940 aaPredicted RBP25.48■■□□□ 1.67
LIG1-216ENST00000598938 PUS7Q96PZ0 661 aaKnown RBP25.48■■□□□ 1.67
LIG1-216ENST00000598938 TMF1P82094 1093 aa25.47■■□□□ 1.67
LIG1-216ENST00000598938 PLCH1Q4KWH8 1693 aa25.46■■□□□ 1.67
LIG1-216ENST00000598938 PMFBP1Q8TBY8 1022 aa25.46■■□□□ 1.67
LIG1-216ENST00000598938 PPIP5K1Q6PFW1 1433 aa25.46■■□□□ 1.67
LIG1-216ENST00000598938 PLEKHG3A1L390 1219 aa25.45■■□□□ 1.66
LIG1-216ENST00000598938 ABCA3Q99758 1704 aa25.45■■□□□ 1.66
LIG1-216ENST00000598938 TNS3Q68CZ2 1445 aa25.44■■□□□ 1.66
LIG1-216ENST00000598938 POLR3AO14802 1390 aaPredicted RBP25.43■■□□□ 1.66
LIG1-216ENST00000598938 CABP1Q9NZU7 370 aa25.41■■□□□ 1.66
LIG1-216ENST00000598938 LRP5O75197 1615 aa25.4■■□□□ 1.66
LIG1-216ENST00000598938 CDCA8Q53HL2 280 aa25.39■■□□□ 1.66
LIG1-216ENST00000598938 KRT28Q7Z3Y7 464 aa25.39■■□□□ 1.66
LIG1-216ENST00000598938 NGDNQ8NEJ9 315 aaKnown RBP25.39■■□□□ 1.66
LIG1-216ENST00000598938 ACEP12821 1306 aa25.38■■□□□ 1.65
LIG1-216ENST00000598938 PSME1Q06323 249 aa25.38■■□□□ 1.65
LIG1-216ENST00000598938 VPS72Q15906 364 aa25.38■■□□□ 1.65
LIG1-216ENST00000598938 SBNO1A3KN83 1393 aa25.38■■□□□ 1.65
LIG1-216ENST00000598938 ARHGEF10O15013 1369 aa25.36■■□□□ 1.65
LIG1-216ENST00000598938 ONECUT3O60422 494 aaPredicted RBP25.36■■□□□ 1.65
LIG1-216ENST00000598938 SF3B2Q13435 895 aaKnown RBP25.36■■□□□ 1.65
LIG1-216ENST00000598938 TRPM3Q9HCF6 1732 aaPredicted RBP25.35■■□□□ 1.65
LIG1-216ENST00000598938 NINLQ9Y2I6 1382 aa25.35■■□□□ 1.65
LIG1-216ENST00000598938 HAP1P54257 671 aaPredicted RBP25.34■■□□□ 1.65
LIG1-216ENST00000598938 CPSF1Q10570 1443 aaKnown RBP25.33■■□□□ 1.65
LIG1-216ENST00000598938 SEPT12Q8IYM1 358 aa25.33■■□□□ 1.65
LIG1-216ENST00000598938 CD163L1Q9NR16 1453 aa25.33■■□□□ 1.65
LIG1-216ENST00000598938 NRAPQ86VF7 1730 aa25.32■■□□□ 1.64
LIG1-216ENST00000598938 AKAP12Q02952 1782 aa25.32■■□□□ 1.64
LIG1-216ENST00000598938 SLC12A5Q9H2X9 1139 aa25.32■■□□□ 1.64
LIG1-216ENST00000598938 TMC1Q8TDI8 760 aa25.31■■□□□ 1.64
LIG1-216ENST00000598938 USP6P35125 1406 aa25.3■■□□□ 1.64
LIG1-216ENST00000598938 MYOM1P52179 1685 aa25.3■■□□□ 1.64
LIG1-216ENST00000598938 C11orf95C9JLR9 678 aaPredicted RBP25.3■■□□□ 1.64
LIG1-216ENST00000598938 BRD4O60885 1362 aaPredicted RBP25.3■■□□□ 1.64
LIG1-216ENST00000598938 DEFB132Q7Z7B7 95 aa25.29■■□□□ 1.64
LIG1-216ENST00000598938 ZNF692Q9BU19 519 aaPredicted RBP25.29■■□□□ 1.64
LIG1-216ENST00000598938 KRT27Q7Z3Y8 459 aa25.28■■□□□ 1.64
LIG1-216ENST00000598938 ALS2Q96Q42 1657 aa25.28■■□□□ 1.64
LIG1-216ENST00000598938 SSH2Q76I76 1423 aa25.28■■□□□ 1.64
LIG1-216ENST00000598938 MON2Q7Z3U7 1717 aa25.27■■□□□ 1.64
LIG1-216ENST00000598938 COL14A1Q05707 1796 aaKnown RBP25.27■■□□□ 1.64
LIG1-216ENST00000598938 RGPD1P0DJD0 1748 aa25.26■■□□□ 1.63
LIG1-216ENST00000598938 A0A1W2PP64 1363 aa25.26■■□□□ 1.63
LIG1-216ENST00000598938 NRKQ7Z2Y5 1582 aa25.26■■□□□ 1.63
LIG1-216ENST00000598938 CABLES1Q8TDN4 633 aa25.25■■□□□ 1.63
LIG1-216ENST00000598938 TERF2IPQ9NYB0 399 aa25.25■■□□□ 1.63
LIG1-216ENST00000598938 CCDC9Q9Y3X0 531 aaKnown RBP25.25■■□□□ 1.63
LIG1-216ENST00000598938 KTN1Q86UP2 1357 aaKnown RBP25.25■■□□□ 1.63
LIG1-216ENST00000598938 ANKRD36BQ8N2N9 1353 aa25.24■■□□□ 1.63
LIG1-216ENST00000598938 KIF7Q2M1P5 1343 aa25.24■■□□□ 1.63
LIG1-216ENST00000598938 HDGFL2Q7Z4V5 671 aaPredicted RBP25.24■■□□□ 1.63
LIG1-216ENST00000598938 PAK3O75914 559 aaPredicted RBP25.22■■□□□ 1.63
LIG1-216ENST00000598938 BAG6P46379 1132 aa25.22■■□□□ 1.63
LIG1-216ENST00000598938 CRYBG1Q9Y4K1 1723 aa25.22■■□□□ 1.63
LIG1-216ENST00000598938 POLR3GLQ9BT43 218 aa25.21■■□□□ 1.63
LIG1-216ENST00000598938 EDC4Q6P2E9 1401 aaKnown RBP25.2■■□□□ 1.63
LIG1-216ENST00000598938 FAM83GA6ND36 823 aa25.2■■□□□ 1.62
LIG1-216ENST00000598938 LMOD2Q6P5Q4 547 aa25.2■■□□□ 1.62
LIG1-216ENST00000598938 CCDC7Q96M83 1385 aa25.19■■□□□ 1.62
LIG1-216ENST00000598938 TTC21BQ7Z4L5 1316 aa25.19■■□□□ 1.62
LIG1-216ENST00000598938 THSD7AQ9UPZ6 1657 aa25.18■■□□□ 1.62
LIG1-216ENST00000598938 WASHC2AQ641Q2 1341 aa25.17■■□□□ 1.62
LIG1-216ENST00000598938 TTC21AQ8NDW8 1320 aa25.17■■□□□ 1.62
LIG1-216ENST00000598938 PIK3C2AO00443 1686 aa25.17■■□□□ 1.62
LIG1-216ENST00000598938 DISP2A7MBM2 1401 aa25.16■■□□□ 1.62
LIG1-216ENST00000598938 TNS1Q9HBL0 1735 aaKnown RBP25.15■■□□□ 1.62
LIG1-216ENST00000598938 ABTB2Q8N961 1025 aa25.15■■□□□ 1.62
LIG1-216ENST00000598938 A0A0G2JS52 829 aa25.14■■□□□ 1.62
LIG1-216ENST00000598938 MYT1Q01538 1121 aa25.14■■□□□ 1.62
LIG1-216ENST00000598938 BTG4Q9NY30 223 aa25.14■■□□□ 1.62
LIG1-216ENST00000598938 FAM98CQ17RN3 349 aaKnown RBP25.13■■□□□ 1.61
LIG1-216ENST00000598938 NUTM2GQ5VZR2 741 aa25.11■■□□□ 1.61
LIG1-216ENST00000598938 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.11■■□□□ 1.61
LIG1-216ENST00000598938 CARD14Q9BXL6 1004 aa25.11■■□□□ 1.61
LIG1-216ENST00000598938 USP19O94966 1318 aa25.11■■□□□ 1.61
LIG1-216ENST00000598938 SPATA31A5Q5VU36 1347 aa25.11■■□□□ 1.61
LIG1-216ENST00000598938 SPATA31A7Q8IWB4 1347 aa25.11■■□□□ 1.61
LIG1-216ENST00000598938 PLEKHG5O94827 1062 aa25.1■■□□□ 1.61
LIG1-216ENST00000598938 NLRP13Q86W25 1043 aa25.1■■□□□ 1.61
LIG1-216ENST00000598938 PHRF1Q9P1Y6 1649 aaKnown RBP25.1■■□□□ 1.61
LIG1-216ENST00000598938 USP54Q70EL1 1684 aa25.1■■□□□ 1.61
LIG1-216ENST00000598938 USP31Q70CQ4 1352 aa25.09■■□□□ 1.61
LIG1-216ENST00000598938 NSD3Q9BZ95 1437 aa25.09■■□□□ 1.61
LIG1-216ENST00000598938 NLRP6P59044 892 aa25.08■■□□□ 1.61
LIG1-216ENST00000598938 NME9Q86XW9 330 aa25.08■■□□□ 1.61
LIG1-216ENST00000598938 PANK3Q9H999 370 aa25.08■■□□□ 1.61
LIG1-216ENST00000598938 SLIT3O75094 1523 aa25.07■■□□□ 1.6
LIG1-216ENST00000598938 PSDA5PKW4 1024 aaPredicted RBP25.06■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms