RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 USP6P35125 1406 aa22.9■■□□□ 1.26
TRIM28-213ENST00000598355 SLIT2O94813 1529 aa22.89■■□□□ 1.26
TRIM28-213ENST00000598355 ADAMTS2O95450 1211 aa22.89■■□□□ 1.25
TRIM28-213ENST00000598355 C8orf37Q96NL8 207 aa22.89■■□□□ 1.25
TRIM28-213ENST00000598355 SSH2Q76I76 1423 aa22.89■■□□□ 1.25
TRIM28-213ENST00000598355 FNBP4Q8N3X1 1017 aaPredicted RBP22.88■■□□□ 1.25
TRIM28-213ENST00000598355 TESK2Q96S53 571 aa22.88■■□□□ 1.25
TRIM28-213ENST00000598355 USP47Q96K76 1375 aa22.88■■□□□ 1.25
TRIM28-213ENST00000598355 PIK3C2AO00443 1686 aa22.87■■□□□ 1.25
TRIM28-213ENST00000598355 CDK12Q9NYV4 1490 aaPredicted RBP22.87■■□□□ 1.25
TRIM28-213ENST00000598355 CPSF1Q10570 1443 aaKnown RBP22.87■■□□□ 1.25
TRIM28-213ENST00000598355 NRAPQ86VF7 1730 aa22.87■■□□□ 1.25
TRIM28-213ENST00000598355 BCL9LQ86UU0 1499 aa22.86■■□□□ 1.25
TRIM28-213ENST00000598355 USP54Q70EL1 1684 aa22.85■■□□□ 1.25
TRIM28-213ENST00000598355 SOCS7O14512 581 aa22.85■■□□□ 1.25
TRIM28-213ENST00000598355 COL14A1Q05707 1796 aaKnown RBP22.85■■□□□ 1.25
TRIM28-213ENST00000598355 CD163L1Q9NR16 1453 aa22.85■■□□□ 1.25
TRIM28-213ENST00000598355 ATRNO75882 1429 aa22.84■■□□□ 1.25
TRIM28-213ENST00000598355 PUS7Q96PZ0 661 aaKnown RBP22.84■■□□□ 1.25
TRIM28-213ENST00000598355 CABP1Q9NZU7 370 aa22.84■■□□□ 1.25
TRIM28-213ENST00000598355 ST20-MTHFSA0A0A6YYL1 179 aa22.83■■□□□ 1.25
TRIM28-213ENST00000598355 CABLES1Q8TDN4 633 aa22.82■■□□□ 1.24
TRIM28-213ENST00000598355 NGLY1Q96IV0 654 aa22.82■■□□□ 1.24
TRIM28-213ENST00000598355 USP19O94966 1318 aa22.81■■□□□ 1.24
TRIM28-213ENST00000598355 LMOD2Q6P5Q4 547 aa22.8■■□□□ 1.24
TRIM28-213ENST00000598355 SLIT3O75094 1523 aa22.8■■□□□ 1.24
TRIM28-213ENST00000598355 SLC24A1O60721 1099 aa22.79■■□□□ 1.24
TRIM28-213ENST00000598355 PAK3O75914 559 aaPredicted RBP22.78■■□□□ 1.24
TRIM28-213ENST00000598355 USP21Q9UK80 565 aa22.78■■□□□ 1.24
TRIM28-213ENST00000598355 MYOM1P52179 1685 aa22.77■■□□□ 1.24
TRIM28-213ENST00000598355 LMO7Q8WWI1 1683 aa22.77■■□□□ 1.24
TRIM28-213ENST00000598355 NINLQ9Y2I6 1382 aa22.77■■□□□ 1.24
TRIM28-213ENST00000598355 GLI3P10071 1580 aa22.77■■□□□ 1.24
TRIM28-213ENST00000598355 RGS12O14924 1447 aa22.75■■□□□ 1.23
TRIM28-213ENST00000598355 ZNF692Q9BU19 519 aaPredicted RBP22.75■■□□□ 1.23
TRIM28-213ENST00000598355 HAP1P54257 671 aaPredicted RBP22.74■■□□□ 1.23
TRIM28-213ENST00000598355 QTRT2Q9H974 415 aaKnown RBP22.74■■□□□ 1.23
TRIM28-213ENST00000598355 TRPC5Q9UL62 973 aaPredicted RBP22.74■■□□□ 1.23
TRIM28-213ENST00000598355 RXRBP28702 533 aa22.73■■□□□ 1.23
TRIM28-213ENST00000598355 RBM6P78332 1123 aaKnown RBP22.73■■□□□ 1.23
TRIM28-213ENST00000598355 CPDO75976 1380 aa22.73■■□□□ 1.23
TRIM28-213ENST00000598355 ABTB2Q8N961 1025 aa22.72■■□□□ 1.23
TRIM28-213ENST00000598355 TTC21AQ8NDW8 1320 aa22.72■■□□□ 1.23
TRIM28-213ENST00000598355 KTN1Q86UP2 1357 aaKnown RBP22.72■■□□□ 1.23
TRIM28-213ENST00000598355 UNC5CLQ8IV45 518 aa22.71■■□□□ 1.23
TRIM28-213ENST00000598355 TTC21BQ7Z4L5 1316 aa22.71■■□□□ 1.23
TRIM28-213ENST00000598355 A0A1W2PP64 1363 aa22.71■■□□□ 1.23
TRIM28-213ENST00000598355 EDC4Q6P2E9 1401 aaKnown RBP22.71■■□□□ 1.23
TRIM28-213ENST00000598355 FAM83GA6ND36 823 aa22.7■■□□□ 1.22
TRIM28-213ENST00000598355 COL18A1P39060 1754 aa22.69■■□□□ 1.22
TRIM28-213ENST00000598355 KIAA0232Q92628 1395 aa22.69■■□□□ 1.22
TRIM28-213ENST00000598355 NLRP13Q86W25 1043 aa22.69■■□□□ 1.22
TRIM28-213ENST00000598355 NFAT5O94916 1531 aa22.68■■□□□ 1.22
TRIM28-213ENST00000598355 TMF1P82094 1093 aa22.68■■□□□ 1.22
TRIM28-213ENST00000598355 NUTM2GQ5VZR2 741 aa22.68■■□□□ 1.22
TRIM28-213ENST00000598355 PLEKHG5O94827 1062 aa22.67■■□□□ 1.22
TRIM28-213ENST00000598355 SLC12A5Q9H2X9 1139 aa22.67■■□□□ 1.22
TRIM28-213ENST00000598355 USP31Q70CQ4 1352 aa22.66■■□□□ 1.22
TRIM28-213ENST00000598355 ANKRD36BQ8N2N9 1353 aa22.65■■□□□ 1.22
TRIM28-213ENST00000598355 VPS72Q15906 364 aa22.65■■□□□ 1.22
TRIM28-213ENST00000598355 GJD4Q96KN9 370 aaPredicted RBP22.65■■□□□ 1.22
TRIM28-213ENST00000598355 BRWD3Q6RI45 1802 aa22.65■■□□□ 1.22
TRIM28-213ENST00000598355 ABCC6O95255 1503 aa22.65■■□□□ 1.22
TRIM28-213ENST00000598355 CAMTA1Q9Y6Y1 1673 aa22.65■■□□□ 1.22
TRIM28-213ENST00000598355 PRDM11Q9NQV5 511 aa22.64■■□□□ 1.21
TRIM28-213ENST00000598355 OVOS2A0A0J9YW53 1432 aa22.64■■□□□ 1.21
TRIM28-213ENST00000598355 OVOS2Q6IE36 1432 aa22.64■■□□□ 1.21
TRIM28-213ENST00000598355 GCP02774 474 aa22.63■■□□□ 1.21
TRIM28-213ENST00000598355 NLRP6P59044 892 aa22.63■■□□□ 1.21
TRIM28-213ENST00000598355 HDGFL2Q7Z4V5 671 aaPredicted RBP22.63■■□□□ 1.21
TRIM28-213ENST00000598355 TERF2IPQ9NYB0 399 aa22.63■■□□□ 1.21
TRIM28-213ENST00000598355 THSD7AQ9UPZ6 1657 aa22.62■■□□□ 1.21
TRIM28-213ENST00000598355 TMC1Q8TDI8 760 aa22.62■■□□□ 1.21
TRIM28-213ENST00000598355 BTG4Q9NY30 223 aa22.62■■□□□ 1.21
TRIM28-213ENST00000598355 LTN1O94822 1766 aa22.62■■□□□ 1.21
TRIM28-213ENST00000598355 KIF20BQ96Q89 1820 aa22.61■■□□□ 1.21
TRIM28-213ENST00000598355 CDCA8Q53HL2 280 aa22.61■■□□□ 1.21
TRIM28-213ENST00000598355 RGPD5Q99666 1765 aa22.61■■□□□ 1.21
TRIM28-213ENST00000598355 ZC3H6P61129 1189 aaKnown RBP22.6■■□□□ 1.21
TRIM28-213ENST00000598355 EP400Q96L91 3159 aa22.59■■□□□ 1.21
TRIM28-213ENST00000598355 EIF4G2P78344 907 aaKnown RBP eCLIP22.59■■□□□ 1.21
TRIM28-213ENST00000598355 COL5A2P05997 1499 aaPredicted RBP22.59■■□□□ 1.21
TRIM28-213ENST00000598355 AATKQ6ZMQ8 1374 aa22.58■■□□□ 1.21
TRIM28-213ENST00000598355 HSPA5P11021 654 aaKnown RBP22.57■■□□□ 1.2
TRIM28-213ENST00000598355 CHRNA2Q15822 529 aa22.57■■□□□ 1.2
TRIM28-213ENST00000598355 WNK3Q9BYP7 1800 aa22.57■■□□□ 1.2
TRIM28-213ENST00000598355 ONECUT3O60422 494 aaPredicted RBP22.56■■□□□ 1.2
TRIM28-213ENST00000598355 NME9Q86XW9 330 aa22.56■■□□□ 1.2
TRIM28-213ENST00000598355 SPATA31A5Q5VU36 1347 aa22.56■■□□□ 1.2
TRIM28-213ENST00000598355 SPATA31A7Q8IWB4 1347 aa22.56■■□□□ 1.2
TRIM28-213ENST00000598355 KCNH5Q8NCM2 988 aa22.55■■□□□ 1.2
TRIM28-213ENST00000598355 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.54■■□□□ 1.2
TRIM28-213ENST00000598355 ARHGEF25Q86VW2 580 aa22.53■■□□□ 1.2
TRIM28-213ENST00000598355 ZRANB1Q9UGI0 708 aa22.53■■□□□ 1.2
TRIM28-213ENST00000598355 SPATA31A1Q5TZJ5 1347 aa22.51■■□□□ 1.19
TRIM28-213ENST00000598355 PARP4Q9UKK3 1724 aaKnown RBP22.51■■□□□ 1.19
TRIM28-213ENST00000598355 ANKRD26Q9UPS8 1709 aa22.5■■□□□ 1.19
TRIM28-213ENST00000598355 FAM208AQ9UK61 1670 aaKnown RBP22.47■■□□□ 1.19
TRIM28-213ENST00000598355 UPF1Q92900 1129 aaKnown RBP eCLIP22.47■■□□□ 1.19
TRIM28-213ENST00000598355 CCDC9Q9Y3X0 531 aaKnown RBP22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms