RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 PPP2R1AP30153 589 aa20.55■□□□□ 0.88
TRIM28-209ENST00000597423 FOXO3O43524 673 aa20.54■□□□□ 0.88
TRIM28-209ENST00000597423 PAK3O75914 559 aaPredicted RBP20.54■□□□□ 0.88
TRIM28-209ENST00000597423 NME9Q86XW9 330 aa20.53■□□□□ 0.88
TRIM28-209ENST00000597423 KRT28Q7Z3Y7 464 aa20.52■□□□□ 0.88
TRIM28-209ENST00000597423 NPHP3Q7Z494 1330 aa20.52■□□□□ 0.87
TRIM28-209ENST00000597423 SCAF1Q9H7N4 1312 aaKnown RBP20.52■□□□□ 0.87
TRIM28-209ENST00000597423 ABTB2Q8N961 1025 aa20.51■□□□□ 0.87
TRIM28-209ENST00000597423 SSH2Q76I76 1423 aa20.51■□□□□ 0.87
TRIM28-209ENST00000597423 LTBP4Q8N2S1 1624 aa20.5■□□□□ 0.87
TRIM28-209ENST00000597423 AKAP12Q02952 1782 aa20.5■□□□□ 0.87
TRIM28-209ENST00000597423 TNNT2P45379 298 aaPredicted RBP20.5■□□□□ 0.87
TRIM28-209ENST00000597423 CFAP53Q96M91 514 aa20.49■□□□□ 0.87
TRIM28-209ENST00000597423 RGPD8O14715 1765 aaPredicted RBP20.49■□□□□ 0.87
TRIM28-209ENST00000597423 NLRP6P59044 892 aa20.48■□□□□ 0.87
TRIM28-209ENST00000597423 BRINP3Q76B58 766 aa20.48■□□□□ 0.87
TRIM28-209ENST00000597423 MON2Q7Z3U7 1717 aa20.47■□□□□ 0.87
TRIM28-209ENST00000597423 TOM1O60784 492 aa20.47■□□□□ 0.87
TRIM28-209ENST00000597423 KIF1AQ12756 1690 aa20.47■□□□□ 0.87
TRIM28-209ENST00000597423 USP31Q70CQ4 1352 aa20.46■□□□□ 0.87
TRIM28-209ENST00000597423 XIRP1Q702N8 1843 aaKnown RBP20.46■□□□□ 0.87
TRIM28-209ENST00000597423 MTHFSP49914 203 aa20.45■□□□□ 0.86
TRIM28-209ENST00000597423 CCDC184Q52MB2 194 aa20.44■□□□□ 0.86
TRIM28-209ENST00000597423 ZRANB1Q9UGI0 708 aa20.44■□□□□ 0.86
TRIM28-209ENST00000597423 SBNO1A3KN83 1393 aa20.44■□□□□ 0.86
TRIM28-209ENST00000597423 LMOD2Q6P5Q4 547 aa20.43■□□□□ 0.86
TRIM28-209ENST00000597423 PNISRQ8TF01 805 aaKnown RBP20.43■□□□□ 0.86
TRIM28-209ENST00000597423 AATKQ6ZMQ8 1374 aa20.43■□□□□ 0.86
TRIM28-209ENST00000597423 XPCQ01831 940 aaPredicted RBP20.42■□□□□ 0.86
TRIM28-209ENST00000597423 FAM9BQ8IZU0 186 aa20.41■□□□□ 0.86
TRIM28-209ENST00000597423 KCNH5Q8NCM2 988 aa20.41■□□□□ 0.86
TRIM28-209ENST00000597423 WDR43Q15061 677 aaKnown RBP eCLIP20.4■□□□□ 0.862e-6■■□□□ 11.4
TRIM28-209ENST00000597423 KIF20BQ96Q89 1820 aa20.4■□□□□ 0.86
TRIM28-209ENST00000597423 NUDCQ9Y266 331 aa20.39■□□□□ 0.85
TRIM28-209ENST00000597423 NRKQ7Z2Y5 1582 aa20.38■□□□□ 0.85
TRIM28-209ENST00000597423 OVOS2A0A0J9YW53 1432 aa20.38■□□□□ 0.85
TRIM28-209ENST00000597423 OVOS2Q6IE36 1432 aa20.38■□□□□ 0.85
TRIM28-209ENST00000597423 PPM1GO15355 546 aaPredicted RBP20.38■□□□□ 0.85
TRIM28-209ENST00000597423 NUTM2GQ5VZR2 741 aa20.38■□□□□ 0.85
TRIM28-209ENST00000597423 POLKQ9UBT6 870 aa20.38■□□□□ 0.85
TRIM28-209ENST00000597423 IQSEC2Q5JU85 1478 aa20.37■□□□□ 0.85
TRIM28-209ENST00000597423 CERKQ8TCT0 537 aa20.37■□□□□ 0.85
TRIM28-209ENST00000597423 ANKRD26Q9UPS8 1709 aa20.36■□□□□ 0.85
TRIM28-209ENST00000597423 ARHGEF10O15013 1369 aa20.36■□□□□ 0.85
TRIM28-209ENST00000597423 SOS2Q07890 1332 aaPredicted RBP20.36■□□□□ 0.85
TRIM28-209ENST00000597423 DDX17Q92841 729 aaKnown RBP20.36■□□□□ 0.85
TRIM28-209ENST00000597423 SPATA31A3Q5VYP0 1347 aa20.35■□□□□ 0.85
TRIM28-209ENST00000597423 UBAP1LF5GYI3 381 aa20.35■□□□□ 0.85
TRIM28-209ENST00000597423 YTHDC1Q96MU7 727 aaKnown RBP20.34■□□□□ 0.85
TRIM28-209ENST00000597423 SOX12O15370 315 aa20.33■□□□□ 0.85
TRIM28-209ENST00000597423 DIAPH1O60610 1272 aaKnown RBP20.33■□□□□ 0.85
TRIM28-209ENST00000597423 LRRC59Q96AG4 307 aaKnown RBP20.33■□□□□ 0.85
TRIM28-209ENST00000597423 INSRP06213 1382 aa20.33■□□□□ 0.84
TRIM28-209ENST00000597423 AMPHP49418 695 aa20.32■□□□□ 0.84
TRIM28-209ENST00000597423 RRS1Q15050 365 aaKnown RBP20.32■□□□□ 0.84
TRIM28-209ENST00000597423 TNS3Q68CZ2 1445 aa20.32■□□□□ 0.84
TRIM28-209ENST00000597423 PXDNQ92626 1479 aa20.31■□□□□ 0.84
TRIM28-209ENST00000597423 GCP02774 474 aa20.31■□□□□ 0.84
TRIM28-209ENST00000597423 FBLN1P23142 703 aa20.31■□□□□ 0.84
TRIM28-209ENST00000597423 EMILIN1Q9Y6C2 1016 aa20.31■□□□□ 0.84
TRIM28-209ENST00000597423 KIF24Q5T7B8 1368 aa20.31■□□□□ 0.84
TRIM28-209ENST00000597423 PNPLA6Q8IY17 1366 aa20.31■□□□□ 0.84
TRIM28-209ENST00000597423 PIP4K2BP78356 416 aa20.3■□□□□ 0.84
TRIM28-209ENST00000597423 PNNQ9H307 717 aaKnown RBP20.3■□□□□ 0.84
TRIM28-209ENST00000597423 USP19O94966 1318 aa20.29■□□□□ 0.84
TRIM28-209ENST00000597423 PIK3C2AO00443 1686 aa20.29■□□□□ 0.84
TRIM28-209ENST00000597423 ADAMTS8Q9UP79 889 aa20.29■□□□□ 0.84
TRIM28-209ENST00000597423 MAP3K19Q56UN5 1328 aa20.27■□□□□ 0.84
TRIM28-209ENST00000597423 SMG6Q86US8 1419 aaKnown RBP20.27■□□□□ 0.84
TRIM28-209ENST00000597423 U2AF1L5P0DN76 240 aaPredicted RBP20.26■□□□□ 0.83
TRIM28-209ENST00000597423 HAP1P54257 671 aaPredicted RBP20.26■□□□□ 0.83
TRIM28-209ENST00000597423 U2AF1Q01081 240 aaKnown RBP eCLIP20.26■□□□□ 0.83
TRIM28-209ENST00000597423 TRPM3Q9HCF6 1732 aaPredicted RBP20.26■□□□□ 0.83
TRIM28-209ENST00000597423 CDK12Q9NYV4 1490 aaPredicted RBP20.25■□□□□ 0.83
TRIM28-209ENST00000597423 FLT4P35916 1363 aa20.25■□□□□ 0.83
TRIM28-209ENST00000597423 U2SURPO15042 1029 aaKnown RBP20.25■□□□□ 0.83
TRIM28-209ENST00000597423 HNRNPUQ00839 825 aaKnown RBP eCLIP20.25■□□□□ 0.83
TRIM28-209ENST00000597423 USP54Q70EL1 1684 aa20.24■□□□□ 0.83
TRIM28-209ENST00000597423 PLEKHG5O94827 1062 aa20.24■□□□□ 0.83
TRIM28-209ENST00000597423 ARHGEF25Q86VW2 580 aa20.24■□□□□ 0.83
TRIM28-209ENST00000597423 IP6K1Q92551 441 aa20.24■□□□□ 0.83
TRIM28-209ENST00000597423 RTL1A6NKG5 1358 aa20.23■□□□□ 0.83
TRIM28-209ENST00000597423 IL13P35225 146 aa20.23■□□□□ 0.83
TRIM28-209ENST00000597423 NEFMP07197 916 aa20.22■□□□□ 0.83
TRIM28-209ENST00000597423 CENPBP07199 599 aaPredicted RBP20.22■□□□□ 0.83
TRIM28-209ENST00000597423 HOXC9P31274 260 aa20.22■□□□□ 0.83
TRIM28-209ENST00000597423 HSP90AB2PQ58FF8 381 aa20.22■□□□□ 0.83
TRIM28-209ENST00000597423 SLIT3O75094 1523 aa20.22■□□□□ 0.83
TRIM28-209ENST00000597423 ZBTB7CA1YPR0 619 aa20.21■□□□□ 0.83
TRIM28-209ENST00000597423 ROBO1Q9Y6N7 1651 aa20.21■□□□□ 0.83
TRIM28-209ENST00000597423 MAP2P11137 1827 aaKnown RBP20.2■□□□□ 0.82
TRIM28-209ENST00000597423 NHSL1Q5SYE7 1610 aa20.2■□□□□ 0.82
TRIM28-209ENST00000597423 AHDC1Q5TGY3 1603 aaPredicted RBP20.2■□□□□ 0.82
TRIM28-209ENST00000597423 ALS2Q96Q42 1657 aa20.2■□□□□ 0.82
TRIM28-209ENST00000597423 FCHSD2O94868 740 aa20.2■□□□□ 0.82
TRIM28-209ENST00000597423 NGEFQ8N5V2 710 aa20.2■□□□□ 0.82
TRIM28-209ENST00000597423 ZC3H6P61129 1189 aaKnown RBP20.19■□□□□ 0.82
TRIM28-209ENST00000597423 EIF4A2Q14240 407 aaKnown RBP20.19■□□□□ 0.82
TRIM28-209ENST00000597423 CABLES1Q8TDN4 633 aa20.19■□□□□ 0.82
TRIM28-209ENST00000597423 RUNDC1Q96C34 613 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms