RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 TMF1P82094 1093 aa15.53■□□□□ 0.08
LIG1-211ENST00000596457 NUTM2GQ5VZR2 741 aa15.53■□□□□ 0.08
LIG1-211ENST00000596457 CABLES1Q8TDN4 633 aa15.53■□□□□ 0.08
LIG1-211ENST00000596457 NGLY1Q96IV0 654 aa15.53■□□□□ 0.08
LIG1-211ENST00000596457 C8orf37Q96NL8 207 aa15.53■□□□□ 0.08
LIG1-211ENST00000596457 CDK12Q9NYV4 1490 aaPredicted RBP15.52■□□□□ 0.08
LIG1-211ENST00000596457 ATAD2Q6PL18 1390 aa15.52■□□□□ 0.08
LIG1-211ENST00000596457 EIF4G2P78344 907 aaKnown RBP eCLIP15.52■□□□□ 0.08
LIG1-211ENST00000596457 POLR3AO14802 1390 aaPredicted RBP15.51■□□□□ 0.07
LIG1-211ENST00000596457 HSPA5P11021 654 aaKnown RBP15.51■□□□□ 0.07
LIG1-211ENST00000596457 POLR3GLQ9BT43 218 aa15.51■□□□□ 0.07
LIG1-211ENST00000596457 QTRT2Q9H974 415 aaKnown RBP15.51■□□□□ 0.07
LIG1-211ENST00000596457 ALS2Q96Q42 1657 aa15.51■□□□□ 0.07
LIG1-211ENST00000596457 ARHGEF10O15013 1369 aa15.5■□□□□ 0.07
LIG1-211ENST00000596457 SLC24A1O60721 1099 aa15.5■□□□□ 0.07
LIG1-211ENST00000596457 RBM6P78332 1123 aaKnown RBP15.5■□□□□ 0.07
LIG1-211ENST00000596457 SLC12A5Q9H2X9 1139 aa15.5■□□□□ 0.07
LIG1-211ENST00000596457 AKAP12Q02952 1782 aa15.49■□□□□ 0.07
LIG1-211ENST00000596457 FNBP4Q8N3X1 1017 aaPredicted RBP15.49■□□□□ 0.07
LIG1-211ENST00000596457 ABTB2Q8N961 1025 aa15.49■□□□□ 0.07
LIG1-211ENST00000596457 MARF1Q9Y4F3 1742 aaKnown RBP15.48■□□□□ 0.07
LIG1-211ENST00000596457 HDGFL2Q7Z4V5 671 aaPredicted RBP15.47■□□□□ 0.07
LIG1-211ENST00000596457 ZNF692Q9BU19 519 aaPredicted RBP15.47■□□□□ 0.07
LIG1-211ENST00000596457 USP21Q9UK80 565 aa15.47■□□□□ 0.07
LIG1-211ENST00000596457 TRPC5Q9UL62 973 aaPredicted RBP15.47■□□□□ 0.07
LIG1-211ENST00000596457 KTN1Q86UP2 1357 aaKnown RBP15.47■□□□□ 0.07
LIG1-211ENST00000596457 ABCA3Q99758 1704 aa15.46■□□□□ 0.07
LIG1-211ENST00000596457 USP6P35125 1406 aa15.46■□□□□ 0.07
LIG1-211ENST00000596457 CDCA8Q53HL2 280 aa15.45■□□□□ 0.06
LIG1-211ENST00000596457 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.45■□□□□ 0.06
LIG1-211ENST00000596457 PUS7Q96PZ0 661 aaKnown RBP15.45■□□□□ 0.06
LIG1-211ENST00000596457 NLRP6P59044 892 aa15.44■□□□□ 0.06
LIG1-211ENST00000596457 TERF2IPQ9NYB0 399 aa15.44■□□□□ 0.06
LIG1-211ENST00000596457 TTC21BQ7Z4L5 1316 aa15.43■□□□□ 0.06
LIG1-211ENST00000596457 RGS12O14924 1447 aa15.43■□□□□ 0.06
LIG1-211ENST00000596457 MON2Q7Z3U7 1717 aa15.43■□□□□ 0.06
LIG1-211ENST00000596457 NLRP13Q86W25 1043 aa15.43■□□□□ 0.06
LIG1-211ENST00000596457 CPSF1Q10570 1443 aaKnown RBP15.43■□□□□ 0.06
LIG1-211ENST00000596457 ZBTB7CA1YPR0 619 aa15.42■□□□□ 0.06
LIG1-211ENST00000596457 CRYBG1Q9Y4K1 1723 aa15.42■□□□□ 0.06
LIG1-211ENST00000596457 PHRF1Q9P1Y6 1649 aaKnown RBP15.42■□□□□ 0.06
LIG1-211ENST00000596457 CD163L1Q9NR16 1453 aa15.41■□□□□ 0.06
LIG1-211ENST00000596457 BRD4O60885 1362 aaPredicted RBP15.41■□□□□ 0.06
LIG1-211ENST00000596457 ZC3H6P61129 1189 aaKnown RBP15.41■□□□□ 0.06
LIG1-211ENST00000596457 ATRNO75882 1429 aa15.41■□□□□ 0.06
LIG1-211ENST00000596457 A0A1W2PP64 1363 aa15.4■□□□□ 0.06
LIG1-211ENST00000596457 SOX12O15370 315 aa15.4■□□□□ 0.06
LIG1-211ENST00000596457 PIK3C2AO00443 1686 aa15.4■□□□□ 0.06
LIG1-211ENST00000596457 NRKQ7Z2Y5 1582 aa15.4■□□□□ 0.06
LIG1-211ENST00000596457 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.4■□□□□ 0.06
LIG1-211ENST00000596457 FAM83GA6ND36 823 aa15.39■□□□□ 0.05
LIG1-211ENST00000596457 TTC21AQ8NDW8 1320 aa15.39■□□□□ 0.05
LIG1-211ENST00000596457 BCL9LQ86UU0 1499 aa15.39■□□□□ 0.05
LIG1-211ENST00000596457 PLCH1Q4KWH8 1693 aa15.38■□□□□ 0.05
LIG1-211ENST00000596457 NINLQ9Y2I6 1382 aa15.38■□□□□ 0.05
LIG1-211ENST00000596457 SSH2Q76I76 1423 aa15.38■□□□□ 0.05
LIG1-211ENST00000596457 CHRNA2Q15822 529 aa15.38■□□□□ 0.05
LIG1-211ENST00000596457 NME9Q86XW9 330 aa15.38■□□□□ 0.05
LIG1-211ENST00000596457 UNC5CLQ8IV45 518 aa15.38■□□□□ 0.05
LIG1-211ENST00000596457 PRDM11Q9NQV5 511 aa15.38■□□□□ 0.05
LIG1-211ENST00000596457 MYOM1P52179 1685 aa15.38■□□□□ 0.05
LIG1-211ENST00000596457 SLIT2O94813 1529 aa15.38■□□□□ 0.05
LIG1-211ENST00000596457 C11orf95C9JLR9 678 aaPredicted RBP15.37■□□□□ 0.05
LIG1-211ENST00000596457 GJD4Q96KN9 370 aaPredicted RBP15.37■□□□□ 0.05
LIG1-211ENST00000596457 EDC4Q6P2E9 1401 aaKnown RBP15.36■□□□□ 0.05
LIG1-211ENST00000596457 GCP02774 474 aa15.36■□□□□ 0.05
LIG1-211ENST00000596457 IFFO2Q5TF58 517 aa15.36■□□□□ 0.05
LIG1-211ENST00000596457 CCDC9Q9Y3X0 531 aaKnown RBP15.36■□□□□ 0.05
LIG1-211ENST00000596457 COL14A1Q05707 1796 aaKnown RBP15.36■□□□□ 0.05
LIG1-211ENST00000596457 ANKRD36BQ8N2N9 1353 aa15.36■□□□□ 0.05
LIG1-211ENST00000596457 KIAA0232Q92628 1395 aa15.36■□□□□ 0.05
LIG1-211ENST00000596457 NWD2Q9ULI1 1742 aa15.35■□□□□ 0.05
LIG1-211ENST00000596457 BTG4Q9NY30 223 aa15.35■□□□□ 0.05
LIG1-211ENST00000596457 USP19O94966 1318 aa15.35■□□□□ 0.05
LIG1-211ENST00000596457 STRN4Q9NRL3 753 aa15.33■□□□□ 0.04
LIG1-211ENST00000596457 LRP5O75197 1615 aa15.32■□□□□ 0.04
LIG1-211ENST00000596457 VPS72Q15906 364 aa15.32■□□□□ 0.04
LIG1-211ENST00000596457 SLIT3O75094 1523 aa15.32■□□□□ 0.04
LIG1-211ENST00000596457 EVA1CP58658 441 aa15.31■□□□□ 0.04
LIG1-211ENST00000596457 CCDC125Q86Z20 511 aa15.31■□□□□ 0.04
LIG1-211ENST00000596457 KCNH5Q8NCM2 988 aa15.31■□□□□ 0.04
LIG1-211ENST00000596457 COG3Q96JB2 828 aa15.31■□□□□ 0.04
LIG1-211ENST00000596457 GGNBP2Q9H3C7 697 aa15.31■□□□□ 0.04
LIG1-211ENST00000596457 KIF20BQ96Q89 1820 aa15.31■□□□□ 0.04
LIG1-211ENST00000596457 KIF7Q2M1P5 1343 aa15.3■□□□□ 0.04
LIG1-211ENST00000596457 CARD14Q9BXL6 1004 aa15.3■□□□□ 0.04
LIG1-211ENST00000596457 NSD3Q9BZ95 1437 aa15.3■□□□□ 0.04
LIG1-211ENST00000596457 EP400Q96L91 3159 aa15.3■□□□□ 0.04
LIG1-211ENST00000596457 RGPD5Q99666 1765 aa15.29■□□□□ 0.04
LIG1-211ENST00000596457 NRAPQ86VF7 1730 aa15.29■□□□□ 0.04
LIG1-211ENST00000596457 USP31Q70CQ4 1352 aa15.29■□□□□ 0.04
LIG1-211ENST00000596457 PANK3Q9H999 370 aa15.29■□□□□ 0.04
LIG1-211ENST00000596457 FYB1O15117 783 aa15.28■□□□□ 0.04
LIG1-211ENST00000596457 ONECUT3O60422 494 aaPredicted RBP15.28■□□□□ 0.04
LIG1-211ENST00000596457 CPDO75976 1380 aa15.27■□□□□ 0.04
LIG1-211ENST00000596457 LTN1O94822 1766 aa15.27■□□□□ 0.04
LIG1-211ENST00000596457 FBLN1P23142 703 aa15.27■□□□□ 0.04
LIG1-211ENST00000596457 USP54Q70EL1 1684 aa15.27■□□□□ 0.03
LIG1-211ENST00000596457 GLI3P10071 1580 aa15.27■□□□□ 0.03
LIG1-211ENST00000596457 CAMTA1Q9Y6Y1 1673 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms