RNA–Protein interactions for RNA: ENST00000596445.5

VRK3-211, Transcript of vaccinia related kinase 3, humanhuman

TSL 5

Gene VRK3, Length 840 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-211ENST00000596445 KIF7Q2M1P5 1343 aa11.6□□□□□ -0.55
VRK3-211ENST00000596445 A0A1W2PP64 1363 aa11.59□□□□□ -0.55
VRK3-211ENST00000596445 ANKRD36BQ8N2N9 1353 aa11.59□□□□□ -0.55
VRK3-211ENST00000596445 PAK3O75914 559 aaPredicted RBP11.59□□□□□ -0.55
VRK3-211ENST00000596445 SSH2Q76I76 1423 aa11.59□□□□□ -0.55
VRK3-211ENST00000596445 NRKQ7Z2Y5 1582 aa11.58□□□□□ -0.55
VRK3-211ENST00000596445 ARHGEF10O15013 1369 aa11.58□□□□□ -0.56
VRK3-211ENST00000596445 PNPLA6Q8IY17 1366 aa11.58□□□□□ -0.56
VRK3-211ENST00000596445 CCDC7Q96M83 1385 aa11.58□□□□□ -0.56
VRK3-211ENST00000596445 COL22A1Q8NFW1 1626 aaPredicted RBP11.58□□□□□ -0.56
VRK3-211ENST00000596445 EDC4Q6P2E9 1401 aaKnown RBP11.58□□□□□ -0.56
VRK3-211ENST00000596445 LMOD2Q6P5Q4 547 aa11.57□□□□□ -0.56
VRK3-211ENST00000596445 SPATA31A6Q5VVP1 1343 aa11.57□□□□□ -0.56
VRK3-211ENST00000596445 WASHC2AQ641Q2 1341 aa11.57□□□□□ -0.56
VRK3-211ENST00000596445 TTC21BQ7Z4L5 1316 aa11.57□□□□□ -0.56
VRK3-211ENST00000596445 ABTB2Q8N961 1025 aa11.56□□□□□ -0.56
VRK3-211ENST00000596445 TTC21AQ8NDW8 1320 aa11.56□□□□□ -0.56
VRK3-211ENST00000596445 PIK3C2AO00443 1686 aa11.55□□□□□ -0.56
VRK3-211ENST00000596445 MED1Q15648 1581 aaPredicted RBP11.54□□□□□ -0.56
VRK3-211ENST00000596445 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.54□□□□□ -0.56
VRK3-211ENST00000596445 PANK3Q9H999 370 aa11.54□□□□□ -0.56
VRK3-211ENST00000596445 ABCA3Q99758 1704 aa11.54□□□□□ -0.56
VRK3-211ENST00000596445 CRYBG1Q9Y4K1 1723 aa11.54□□□□□ -0.56
VRK3-211ENST00000596445 NUTM2GQ5VZR2 741 aa11.53□□□□□ -0.56
VRK3-211ENST00000596445 NLRP13Q86W25 1043 aa11.53□□□□□ -0.56
VRK3-211ENST00000596445 CARD14Q9BXL6 1004 aa11.53□□□□□ -0.56
VRK3-211ENST00000596445 USP54Q70EL1 1684 aa11.52□□□□□ -0.56
VRK3-211ENST00000596445 MARF1Q9Y4F3 1742 aaKnown RBP11.52□□□□□ -0.56
VRK3-211ENST00000596445 KIF20BQ96Q89 1820 aa11.52□□□□□ -0.57
VRK3-211ENST00000596445 NUTM2BA6NNL0 878 aaPredicted RBP11.52□□□□□ -0.57
VRK3-211ENST00000596445 NUTM2EB1AL46 878 aaPredicted RBP11.52□□□□□ -0.57
VRK3-211ENST00000596445 NLRP6P59044 892 aa11.52□□□□□ -0.57
VRK3-211ENST00000596445 NUTM2AQ8IVF1 878 aaPredicted RBP11.52□□□□□ -0.57
VRK3-211ENST00000596445 NSD3Q9BZ95 1437 aa11.52□□□□□ -0.57
VRK3-211ENST00000596445 LRP6O75581 1613 aa11.51□□□□□ -0.57
VRK3-211ENST00000596445 PHRF1Q9P1Y6 1649 aaKnown RBP11.51□□□□□ -0.57
VRK3-211ENST00000596445 NME9Q86XW9 330 aa11.51□□□□□ -0.57
VRK3-211ENST00000596445 CABLES1Q8TDN4 633 aa11.51□□□□□ -0.57
VRK3-211ENST00000596445 USP19O94966 1318 aa11.51□□□□□ -0.57
VRK3-211ENST00000596445 PLEKHG5O94827 1062 aa11.5□□□□□ -0.57
VRK3-211ENST00000596445 HAP1P54257 671 aaPredicted RBP11.5□□□□□ -0.57
VRK3-211ENST00000596445 CGNL1Q0VF96 1302 aa11.5□□□□□ -0.57
VRK3-211ENST00000596445 USP31Q70CQ4 1352 aa11.5□□□□□ -0.57
VRK3-211ENST00000596445 FYB1O15117 783 aa11.49□□□□□ -0.57
VRK3-211ENST00000596445 SLIT3O75094 1523 aa11.49□□□□□ -0.57
VRK3-211ENST00000596445 ZNF316A6NFI3 1004 aaPredicted RBP11.48□□□□□ -0.57
VRK3-211ENST00000596445 ADAMTS2O95450 1211 aa11.48□□□□□ -0.57
VRK3-211ENST00000596445 GCP02774 474 aa11.48□□□□□ -0.57
VRK3-211ENST00000596445 MEX3CQ5U5Q3 659 aaKnown RBP11.48□□□□□ -0.57
VRK3-211ENST00000596445 ZRANB1Q9UGI0 708 aa11.48□□□□□ -0.57
VRK3-211ENST00000596445 KNSTRNQ9Y448 316 aa11.48□□□□□ -0.57
VRK3-211ENST00000596445 OVOS2A0A0J9YW53 1432 aa11.48□□□□□ -0.57
VRK3-211ENST00000596445 OVOS2Q6IE36 1432 aa11.48□□□□□ -0.57
VRK3-211ENST00000596445 ANKRD26Q9UPS8 1709 aa11.47□□□□□ -0.57
VRK3-211ENST00000596445 PER1O15534 1290 aaPredicted RBP11.47□□□□□ -0.57
VRK3-211ENST00000596445 COG3Q96JB2 828 aa11.47□□□□□ -0.57
VRK3-211ENST00000596445 NSD2O96028 1365 aa11.46□□□□□ -0.57
VRK3-211ENST00000596445 KCNH5Q8NCM2 988 aa11.46□□□□□ -0.57
VRK3-211ENST00000596445 GGNBP2Q9H3C7 697 aa11.46□□□□□ -0.57
VRK3-211ENST00000596445 NFAT5O94916 1531 aa11.45□□□□□ -0.58
VRK3-211ENST00000596445 CPDO75976 1380 aa11.45□□□□□ -0.58
VRK3-211ENST00000596445 ZC3H6P61129 1189 aaKnown RBP11.45□□□□□ -0.58
VRK3-211ENST00000596445 C8orf37Q96NL8 207 aa11.45□□□□□ -0.58
VRK3-211ENST00000596445 COL14A1Q05707 1796 aaKnown RBP11.44□□□□□ -0.58
VRK3-211ENST00000596445 KIAA0232Q92628 1395 aa11.44□□□□□ -0.58
VRK3-211ENST00000596445 FAM83GA6ND36 823 aa11.44□□□□□ -0.58
VRK3-211ENST00000596445 AMER1Q5JTC6 1135 aaPredicted RBP11.44□□□□□ -0.58
VRK3-211ENST00000596445 NGLY1Q96IV0 654 aa11.44□□□□□ -0.58
VRK3-211ENST00000596445 LTN1O94822 1766 aa11.44□□□□□ -0.58
VRK3-211ENST00000596445 NWD2Q9ULI1 1742 aa11.43□□□□□ -0.58
VRK3-211ENST00000596445 PLCH1Q4KWH8 1693 aa11.43□□□□□ -0.58
VRK3-211ENST00000596445 SOX12O15370 315 aa11.43□□□□□ -0.58
VRK3-211ENST00000596445 DDX10Q13206 875 aaKnown RBP11.43□□□□□ -0.58
VRK3-211ENST00000596445 ARHGEF25Q86VW2 580 aa11.43□□□□□ -0.58
VRK3-211ENST00000596445 FNBP4Q8N3X1 1017 aaPredicted RBP11.43□□□□□ -0.58
VRK3-211ENST00000596445 PRDM11Q9NQV5 511 aa11.43□□□□□ -0.58
VRK3-211ENST00000596445 NPC1L1Q9UHC9 1359 aa11.42□□□□□ -0.58
VRK3-211ENST00000596445 MAP2P11137 1827 aaKnown RBP11.42□□□□□ -0.58
VRK3-211ENST00000596445 SLIT2O94813 1529 aa11.42□□□□□ -0.58
VRK3-211ENST00000596445 COL18A1P39060 1754 aa11.41□□□□□ -0.58
VRK3-211ENST00000596445 AFF2P51816 1311 aa11.41□□□□□ -0.58
VRK3-211ENST00000596445 LMO7Q8WWI1 1683 aa11.41□□□□□ -0.58
VRK3-211ENST00000596445 CHRNA2Q15822 529 aa11.41□□□□□ -0.58
VRK3-211ENST00000596445 PHF23Q9BUL5 403 aaPredicted RBP11.41□□□□□ -0.58
VRK3-211ENST00000596445 RGPD5Q99666 1765 aa11.41□□□□□ -0.58
VRK3-211ENST00000596445 AATKQ6ZMQ8 1374 aa11.41□□□□□ -0.58
VRK3-211ENST00000596445 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.4□□□□□ -0.58
VRK3-211ENST00000596445 ABCC6O95255 1503 aa11.4□□□□□ -0.58
VRK3-211ENST00000596445 ZBTB7CA1YPR0 619 aa11.4□□□□□ -0.58
VRK3-211ENST00000596445 FBLN1P23142 703 aa11.4□□□□□ -0.58
VRK3-211ENST00000596445 MORC1Q86VD1 984 aa11.4□□□□□ -0.58
VRK3-211ENST00000596445 USP21Q9UK80 565 aa11.4□□□□□ -0.58
VRK3-211ENST00000596445 BCL9LQ86UU0 1499 aa11.39□□□□□ -0.59
VRK3-211ENST00000596445 CC2D1BQ5T0F9 858 aaKnown RBP11.39□□□□□ -0.59
VRK3-211ENST00000596445 ZNF772Q68DY9 489 aaPredicted RBP11.39□□□□□ -0.59
VRK3-211ENST00000596445 NRAPQ86VF7 1730 aa11.39□□□□□ -0.59
VRK3-211ENST00000596445 UNC5CLQ8IV45 518 aa11.39□□□□□ -0.59
VRK3-211ENST00000596445 BTG4Q9NY30 223 aa11.39□□□□□ -0.59
VRK3-211ENST00000596445 CAMTA1Q9Y6Y1 1673 aa11.39□□□□□ -0.59
VRK3-211ENST00000596445 MAP3K19Q56UN5 1328 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms