RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 U2AF2P26368 475 aaKnown RBP eCLIP14.88□□□□□ -0.03
LIG1-207ENST00000594759 USP25Q9UHP3 1055 aa14.88□□□□□ -0.03
LIG1-207ENST00000594759 RBSNQ9H1K0 784 aa14.88□□□□□ -0.03
LIG1-207ENST00000594759 GTF2E1P29083 439 aaPredicted RBP14.87□□□□□ -0.03
LIG1-207ENST00000594759 ARGLU1Q9NWB6 273 aaPredicted RBP14.87□□□□□ -0.03
LIG1-207ENST00000594759 OGFRQ9NZT2 677 aa14.87□□□□□ -0.03
LIG1-207ENST00000594759 NINLQ9Y2I6 1382 aa14.87□□□□□ -0.03
LIG1-207ENST00000594759 CAMSAP2Q08AD1 1489 aa14.87□□□□□ -0.03
LIG1-207ENST00000594759 LRSAM1Q6UWE0 723 aa14.86□□□□□ -0.03
LIG1-207ENST00000594759 MINK1Q8N4C8 1332 aaPredicted RBP14.86□□□□□ -0.03
LIG1-207ENST00000594759 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.86□□□□□ -0.03
LIG1-207ENST00000594759 SMC5Q8IY18 1101 aa14.86□□□□□ -0.03
LIG1-207ENST00000594759 PCDHB15Q9Y5E8 787 aa14.86□□□□□ -0.03
LIG1-207ENST00000594759 CDC45O75419 566 aa14.85□□□□□ -0.03
LIG1-207ENST00000594759 KRT222Q8N1A0 295 aa14.85□□□□□ -0.03
LIG1-207ENST00000594759 TTC12Q9H892 705 aaPredicted RBP14.85□□□□□ -0.03
LIG1-207ENST00000594759 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP14.85□□□□□ -0.03
LIG1-207ENST00000594759 REC8O95072 547 aa14.85□□□□□ -0.03
LIG1-207ENST00000594759 ATP6V1DQ9Y5K8 247 aa14.85□□□□□ -0.03
LIG1-207ENST00000594759 NUP153P49790 1475 aaKnown RBP14.84□□□□□ -0.03
LIG1-207ENST00000594759 GTF2F1P35269 517 aaKnown RBP eCLIP14.84□□□□□ -0.032e-10■■■■■ 37.3
LIG1-207ENST00000594759 CHMP3Q9Y3E7 222 aa14.84□□□□□ -0.03
LIG1-207ENST00000594759 ROCK1Q13464 1354 aa14.84□□□□□ -0.03
LIG1-207ENST00000594759 GOLGA6L19H0YKK7 550 aa14.83□□□□□ -0.03
LIG1-207ENST00000594759 SNX21Q969T3 373 aa14.83□□□□□ -0.03
LIG1-207ENST00000594759 PLEKHH2Q8IVE3 1493 aa14.83□□□□□ -0.04
LIG1-207ENST00000594759 VGFO15240 615 aaPredicted RBP14.83□□□□□ -0.04
LIG1-207ENST00000594759 GNL2Q13823 731 aaKnown RBP14.83□□□□□ -0.04
LIG1-207ENST00000594759 TCP11L2Q8N4U5 519 aa14.83□□□□□ -0.04
LIG1-207ENST00000594759 DEF6Q9H4E7 631 aa14.83□□□□□ -0.04
LIG1-207ENST00000594759 MVPQ14764 893 aaKnown RBP14.82□□□□□ -0.04
LIG1-207ENST00000594759 TRIM5Q9C035 493 aa14.82□□□□□ -0.04
LIG1-207ENST00000594759 ADCY5O95622 1261 aa14.82□□□□□ -0.04
LIG1-207ENST00000594759 GTF2A1P52655 376 aaPredicted RBP14.82□□□□□ -0.04
LIG1-207ENST00000594759 GABPB1Q06547 395 aaPredicted RBP14.82□□□□□ -0.04
LIG1-207ENST00000594759 HDGFL2Q7Z4V5 671 aaPredicted RBP14.82□□□□□ -0.04
LIG1-207ENST00000594759 NKTRP30414 1462 aaKnown RBP14.82□□□□□ -0.04
LIG1-207ENST00000594759 INTS3Q68E01 1043 aaKnown RBP14.81□□□□□ -0.04
LIG1-207ENST00000594759 ZNF445P59923 1031 aa14.81□□□□□ -0.04
LIG1-207ENST00000594759 GPATCH11Q8N954 259 aa14.81□□□□□ -0.04
LIG1-207ENST00000594759 GPATCH8Q9UKJ3 1502 aaKnown RBP14.81□□□□□ -0.04
LIG1-207ENST00000594759 CERS3Q8IU89 383 aa14.81□□□□□ -0.04
LIG1-207ENST00000594759 BCL2L12Q9HB09 334 aa14.81□□□□□ -0.04
LIG1-207ENST00000594759 ZSCAN20P17040 1043 aaPredicted RBP14.81□□□□□ -0.04
LIG1-207ENST00000594759 SETQ01105 290 aaPredicted RBP14.81□□□□□ -0.04
LIG1-207ENST00000594759 RUNDC1Q96C34 613 aa14.81□□□□□ -0.04
LIG1-207ENST00000594759 ATP10BO94823 1461 aa14.8□□□□□ -0.04
LIG1-207ENST00000594759 PLEKHH1Q9ULM0 1364 aa14.8□□□□□ -0.04
LIG1-207ENST00000594759 HDGFP51858 240 aaKnown RBP14.8□□□□□ -0.04
LIG1-207ENST00000594759 C16orf45Q96MC5 204 aaPredicted RBP14.8□□□□□ -0.04
LIG1-207ENST00000594759 TPM4P67936 248 aa14.8□□□□□ -0.04
LIG1-207ENST00000594759 NOL10Q9BSC4 688 aaKnown RBP14.8□□□□□ -0.04
LIG1-207ENST00000594759 NEK4P51957 841 aa14.8□□□□□ -0.04
LIG1-207ENST00000594759 RARSP54136 660 aaKnown RBP14.8□□□□□ -0.04
LIG1-207ENST00000594759 HOMER1Q86YM7 354 aa14.8□□□□□ -0.04
LIG1-207ENST00000594759 BECN2A8MW95 431 aa14.79□□□□□ -0.04
LIG1-207ENST00000594759 TNNT1P13805 278 aa14.79□□□□□ -0.04
LIG1-207ENST00000594759 WWC1Q8IX03 1113 aa14.79□□□□□ -0.04
LIG1-207ENST00000594759 MNS1Q8NEH6 495 aa14.79□□□□□ -0.04
LIG1-207ENST00000594759 CCAR2Q8N163 923 aaKnown RBP14.79□□□□□ -0.04
LIG1-207ENST00000594759 ELL2O00472 640 aaPredicted RBP14.78□□□□□ -0.04
LIG1-207ENST00000594759 PARD3Q8TEW0 1356 aa14.78□□□□□ -0.04
LIG1-207ENST00000594759 USP19O94966 1318 aa14.78□□□□□ -0.04
LIG1-207ENST00000594759 PATL2C9JE40 543 aaKnown RBP14.78□□□□□ -0.04
LIG1-207ENST00000594759 RTF1Q92541 710 aaKnown RBP14.78□□□□□ -0.04
LIG1-207ENST00000594759 AK7Q96M32 723 aa14.78□□□□□ -0.04
LIG1-207ENST00000594759 CHD1LQ86WJ1 897 aa14.77□□□□□ -0.04
LIG1-207ENST00000594759 LEKR1Q6ZMV7 388 aa14.77□□□□□ -0.04
LIG1-207ENST00000594759 GAS2L2Q8NHY3 880 aa14.77□□□□□ -0.04
LIG1-207ENST00000594759 PIBF1Q8WXW3 757 aa14.77□□□□□ -0.04
LIG1-207ENST00000594759 TNNQ9UQP3 1299 aa14.77□□□□□ -0.04
LIG1-207ENST00000594759 RBM42Q9BTD8 480 aaKnown RBP14.77□□□□□ -0.05
LIG1-207ENST00000594759 SPINK5Q9NQ38 1064 aaPredicted RBP14.77□□□□□ -0.05
LIG1-207ENST00000594759 UGGT2Q9NYU1 1516 aa14.77□□□□□ -0.05
LIG1-207ENST00000594759 CTTNBP2Q8WZ74 1663 aa14.77□□□□□ -0.05
LIG1-207ENST00000594759 RIOK3O14730 519 aaKnown RBP14.76□□□□□ -0.05
LIG1-207ENST00000594759 POLR3GO15318 223 aaPredicted RBP14.76□□□□□ -0.05
LIG1-207ENST00000594759 C17orf53Q8N3J3 647 aaPredicted RBP14.76□□□□□ -0.05
LIG1-207ENST00000594759 TSR2Q969E8 191 aaKnown RBP14.76□□□□□ -0.05
LIG1-207ENST00000594759 CABP2Q9NPB3 220 aa14.76□□□□□ -0.05
LIG1-207ENST00000594759 TERF2IPQ9NYB0 399 aa14.76□□□□□ -0.05
LIG1-207ENST00000594759 ZBTB22O15209 634 aa14.76□□□□□ -0.05
LIG1-207ENST00000594759 UVSSAQ2YD98 709 aa14.76□□□□□ -0.05
LIG1-207ENST00000594759 ADAMTS12P58397 1594 aa14.76□□□□□ -0.05
LIG1-207ENST00000594759 CCDC141Q6ZP82 1450 aa14.75□□□□□ -0.05
LIG1-207ENST00000594759 A0A0G2JS52 829 aa14.75□□□□□ -0.05
LIG1-207ENST00000594759 C1orf115Q9H7X2 142 aa14.75□□□□□ -0.05
LIG1-207ENST00000594759 SPATA31E1Q6ZUB1 1445 aa14.75□□□□□ -0.05
LIG1-207ENST00000594759 EXOSC9Q06265 439 aaKnown RBP14.75□□□□□ -0.05
LIG1-207ENST00000594759 FIBPO43427 364 aa14.74□□□□□ -0.05
LIG1-207ENST00000594759 CCDC192P0DO97 292 aa14.74□□□□□ -0.05
LIG1-207ENST00000594759 GORABQ5T7V8 394 aa14.74□□□□□ -0.05
LIG1-207ENST00000594759 SLC12A5Q9H2X9 1139 aa14.73□□□□□ -0.05
LIG1-207ENST00000594759 ATP2B3Q16720 1220 aa14.73□□□□□ -0.05
LIG1-207ENST00000594759 RLBP1P12271 317 aa14.73□□□□□ -0.05
LIG1-207ENST00000594759 HCLS1P14317 486 aaPredicted RBP14.73□□□□□ -0.05
LIG1-207ENST00000594759 BMS1Q14692 1282 aaKnown RBP14.73□□□□□ -0.05
LIG1-207ENST00000594759 EVC2Q86UK5 1308 aa14.72□□□□□ -0.05
LIG1-207ENST00000594759 MCM2P49736 904 aa14.72□□□□□ -0.05
LIG1-207ENST00000594759 RASSF4Q9H2L5 321 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms