RNA–Protein interactions for RNA: ENST00000594104.1

VRK3-208, Transcript of vaccinia related kinase 3, humanhuman

Gene VRK3, Length 2,197 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-208ENST00000594104 SRPK2P78362 688 aaKnown RBP15.11■□□□□ 0.01
VRK3-208ENST00000594104 C20orf194Q5TEA3 1177 aa15.11■□□□□ 0.01
VRK3-208ENST00000594104 TCP11L2Q8N4U5 519 aa15.11■□□□□ 0.01
VRK3-208ENST00000594104 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.11■□□□□ 0.01
VRK3-208ENST00000594104 STAG3Q9UJ98 1225 aa15.11■□□□□ 0.01
VRK3-208ENST00000594104 FBXO31Q5XUX0 539 aaPredicted RBP15.11■□□□□ 0.01
VRK3-208ENST00000594104 PRAM1Q96QH2 718 aa15.11■□□□□ 0.01
VRK3-208ENST00000594104 SPINK5Q9NQ38 1064 aaPredicted RBP15.11■□□□□ 0.01
VRK3-208ENST00000594104 NOP58Q9Y2X3 529 aaKnown RBP15.11■□□□□ 0.01
VRK3-208ENST00000594104 HDGFL2Q7Z4V5 671 aaPredicted RBP15.1■□□□□ 0.01
VRK3-208ENST00000594104 STK26Q9P289 416 aa15.1■□□□□ 0.01
VRK3-208ENST00000594104 A0A1W2PP64 1363 aa15.1■□□□□ 0.01
VRK3-208ENST00000594104 A2ML1A8K2U0 1454 aa15.1■□□□□ 0.01
VRK3-208ENST00000594104 CT47B1P0C2W7 299 aaPredicted RBP15.09■□□□□ 0.01
VRK3-208ENST00000594104 SIRT1Q96EB6 747 aa15.09■□□□□ 0.01
VRK3-208ENST00000594104 PNNQ9H307 717 aaKnown RBP15.09■□□□□ 0.01
VRK3-208ENST00000594104 ARHGEF40Q8TER5 1519 aa15.09■□□□□ 0.01
VRK3-208ENST00000594104 HDGFP51858 240 aaKnown RBP15.09■□□□□ 0.01
VRK3-208ENST00000594104 MYH16Q9H6N6 1097 aa15.08■□□□□ 0.01
VRK3-208ENST00000594104 MYO5BQ9ULV0 1848 aa15.08■□□□□ 0
VRK3-208ENST00000594104 RIMS2Q9UQ26 1411 aa15.07■□□□□ 0
VRK3-208ENST00000594104 TNNT2P45379 298 aaPredicted RBP15.07■□□□□ 0
VRK3-208ENST00000594104 HS6ST3Q8IZP7 471 aa15.06■□□□□ 0
VRK3-208ENST00000594104 CDK19Q9BWU1 502 aa15.06■□□□□ 0
VRK3-208ENST00000594104 FYB1O15117 783 aa15.05■□□□□ 0
VRK3-208ENST00000594104 IL16Q14005 1332 aa15.05■□□□□ -0
VRK3-208ENST00000594104 MINK1Q8N4C8 1332 aaPredicted RBP15.05■□□□□ -0
VRK3-208ENST00000594104 CD163L1Q9NR16 1453 aa15.05■□□□□ -0
VRK3-208ENST00000594104 U2AF1L5P0DN76 240 aaPredicted RBP15.05■□□□□ -0
VRK3-208ENST00000594104 U2AF1Q01081 240 aaKnown RBP eCLIP15.05■□□□□ -0
VRK3-208ENST00000594104 ZBTB47Q9UFB7 747 aaPredicted RBP15.05■□□□□ -0
VRK3-208ENST00000594104 PNPLA6Q8IY17 1366 aa15.05■□□□□ -0
VRK3-208ENST00000594104 ATP7BP35670 1465 aa15.04■□□□□ -0
VRK3-208ENST00000594104 ANKRD26Q9UPS8 1709 aa15.04■□□□□ -0
VRK3-208ENST00000594104 ADGRB2O60241 1585 aa15.04■□□□□ -0
VRK3-208ENST00000594104 BCAR3O75815 825 aa15.04■□□□□ -0
VRK3-208ENST00000594104 LMOD2Q6P5Q4 547 aa15.04■□□□□ -0
VRK3-208ENST00000594104 NLRP1Q9C000 1473 aa15.04■□□□□ -0
VRK3-208ENST00000594104 RARSP54136 660 aaKnown RBP15.04■□□□□ -0
VRK3-208ENST00000594104 SAFB2Q14151 953 aaKnown RBP eCLIP15.04■□□□□ -0
VRK3-208ENST00000594104 NEUROD2Q15784 382 aa15.03■□□□□ -0
VRK3-208ENST00000594104 COL3A1P02461 1466 aaPredicted RBP15.03■□□□□ -0
VRK3-208ENST00000594104 U3KPZ7 1027 aaPredicted RBP15.02■□□□□ -0
VRK3-208ENST00000594104 PLEKHF1Q96S99 279 aa15.01□□□□□ -0.01
VRK3-208ENST00000594104 ESF1Q9H501 851 aaKnown RBP15.01□□□□□ -0.01
VRK3-208ENST00000594104 FAM135BQ49AJ0 1406 aa15.01□□□□□ -0.01
VRK3-208ENST00000594104 DDRGK1Q96HY6 314 aa15.01□□□□□ -0.01
VRK3-208ENST00000594104 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15□□□□□ -0.01
VRK3-208ENST00000594104 GGNBP2Q9H3C7 697 aa15□□□□□ -0.01
VRK3-208ENST00000594104 ZMYM3Q14202 1370 aa15□□□□□ -0.01
VRK3-208ENST00000594104 DIAPH1O60610 1272 aaKnown RBP15□□□□□ -0.01
VRK3-208ENST00000594104 CANXP27824 592 aaKnown RBP15□□□□□ -0.01
VRK3-208ENST00000594104 CABP1Q9NZU7 370 aa15□□□□□ -0.01
VRK3-208ENST00000594104 TECPR2O15040 1411 aa14.99□□□□□ -0.01
VRK3-208ENST00000594104 CLUAP1Q96AJ1 413 aa14.99□□□□□ -0.01
VRK3-208ENST00000594104 TSPOAP1O95153 1857 aa14.98□□□□□ -0.01
VRK3-208ENST00000594104 FCHSD2O94868 740 aa14.98□□□□□ -0.01
VRK3-208ENST00000594104 TMPOP42166 694 aaKnown RBP14.98□□□□□ -0.01
VRK3-208ENST00000594104 NKX1-1Q15270 411 aaPredicted RBP14.98□□□□□ -0.01
VRK3-208ENST00000594104 FAM161AQ3B820 660 aa14.98□□□□□ -0.01
VRK3-208ENST00000594104 PMFBP1Q8TBY8 1022 aa14.98□□□□□ -0.01
VRK3-208ENST00000594104 RRP7AQ9Y3A4 280 aaKnown RBP14.98□□□□□ -0.01
VRK3-208ENST00000594104 SETD1AO15047 1707 aaKnown RBP14.98□□□□□ -0.01
VRK3-208ENST00000594104 MAPK8IP3Q9UPT6 1336 aa14.98□□□□□ -0.01
VRK3-208ENST00000594104 CDC42BPGQ6DT37 1551 aa14.98□□□□□ -0.01
VRK3-208ENST00000594104 EDC4Q6P2E9 1401 aaKnown RBP14.97□□□□□ -0.01
VRK3-208ENST00000594104 WASLO00401 505 aaPredicted RBP14.97□□□□□ -0.01
VRK3-208ENST00000594104 CIZ1Q9ULV3 898 aaPredicted RBP14.97□□□□□ -0.01
VRK3-208ENST00000594104 CPSF1Q10570 1443 aaKnown RBP14.96□□□□□ -0.01
VRK3-208ENST00000594104 TNRQ92752 1358 aa14.96□□□□□ -0.01
VRK3-208ENST00000594104 ARID3AQ99856 593 aa14.95□□□□□ -0.02
VRK3-208ENST00000594104 U2SURPO15042 1029 aaKnown RBP14.95□□□□□ -0.02
VRK3-208ENST00000594104 AATKQ6ZMQ8 1374 aa14.94□□□□□ -0.02
VRK3-208ENST00000594104 PAK3O75914 559 aaPredicted RBP14.94□□□□□ -0.02
VRK3-208ENST00000594104 ZNF428Q96B54 188 aa14.94□□□□□ -0.02
VRK3-208ENST00000594104 KIF20BQ96Q89 1820 aa14.94□□□□□ -0.02
VRK3-208ENST00000594104 KNDC1Q76NI1 1749 aa14.94□□□□□ -0.02
VRK3-208ENST00000594104 GTPBP6O43824 516 aaPredicted RBP14.94□□□□□ -0.02
VRK3-208ENST00000594104 ZNF692Q9BU19 519 aaPredicted RBP14.94□□□□□ -0.02
VRK3-208ENST00000594104 TRIM35Q9UPQ4 493 aa14.94□□□□□ -0.02
VRK3-208ENST00000594104 NEFMP07197 916 aa14.93□□□□□ -0.02
VRK3-208ENST00000594104 CALD1Q05682 793 aaKnown RBP14.93□□□□□ -0.02
VRK3-208ENST00000594104 WAPLQ7Z5K2 1190 aa14.93□□□□□ -0.02
VRK3-208ENST00000594104 NRXN3Q9Y4C0 1643 aa14.93□□□□□ -0.02
VRK3-208ENST00000594104 ZKSCAN2Q63HK3 967 aa14.92□□□□□ -0.02
VRK3-208ENST00000594104 PANK1Q8TE04 598 aa14.92□□□□□ -0.02
VRK3-208ENST00000594104 COG6Q9Y2V7 657 aa14.92□□□□□ -0.02
VRK3-208ENST00000594104 TMEM2Q9UHN6 1383 aa14.92□□□□□ -0.02
VRK3-208ENST00000594104 MLECQ14165 292 aa14.92□□□□□ -0.02
VRK3-208ENST00000594104 FRAT1Q92837 279 aaPredicted RBP14.92□□□□□ -0.02
VRK3-208ENST00000594104 POLKQ9UBT6 870 aa14.92□□□□□ -0.02
VRK3-208ENST00000594104 CCDC61Q9Y6R9 512 aa14.92□□□□□ -0.02
VRK3-208ENST00000594104 METP08581 1390 aa14.92□□□□□ -0.02
VRK3-208ENST00000594104 CPS1P31327 1500 aa14.91□□□□□ -0.02
VRK3-208ENST00000594104 RWDD1Q9H446 243 aaPredicted RBP14.91□□□□□ -0.02
VRK3-208ENST00000594104 KIF13AQ9H1H9 1805 aa14.91□□□□□ -0.02
VRK3-208ENST00000594104 ZMYND15Q9H091 742 aa14.91□□□□□ -0.02
VRK3-208ENST00000594104 IGHDP01880 384 aa14.9□□□□□ -0.02
VRK3-208ENST00000594104 RIPK4P57078 832 aa14.9□□□□□ -0.02
VRK3-208ENST00000594104 C8orf34Q49A92 452 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms