RNA–Protein interactions for RNA: ENST00000593008.1

DDX39A-220, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 538 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-220ENST00000593008 HAP1P54257 671 aaPredicted RBP13.46□□□□□ -0.25
DDX39A-220ENST00000593008 TMF1P82094 1093 aa13.46□□□□□ -0.25
DDX39A-220ENST00000593008 ACEP12821 1306 aa13.45□□□□□ -0.26
DDX39A-220ENST00000593008 QTRT2Q9H974 415 aaKnown RBP13.44□□□□□ -0.26
DDX39A-220ENST00000593008 USP21Q9UK80 565 aa13.44□□□□□ -0.26
DDX39A-220ENST00000593008 PPIP5K1Q6PFW1 1433 aa13.44□□□□□ -0.26
DDX39A-220ENST00000593008 ARHGEF10O15013 1369 aa13.44□□□□□ -0.26
DDX39A-220ENST00000593008 CD163L1Q9NR16 1453 aa13.43□□□□□ -0.26
DDX39A-220ENST00000593008 PLEKHG3A1L390 1219 aa13.43□□□□□ -0.26
DDX39A-220ENST00000593008 ZNF316A6NFI3 1004 aaPredicted RBP13.43□□□□□ -0.26
DDX39A-220ENST00000593008 RXRBP28702 533 aa13.43□□□□□ -0.26
DDX39A-220ENST00000593008 NUTM2GQ5VZR2 741 aa13.43□□□□□ -0.26
DDX39A-220ENST00000593008 CABP1Q9NZU7 370 aa13.43□□□□□ -0.26
DDX39A-220ENST00000593008 SLC12A5Q9H2X9 1139 aa13.42□□□□□ -0.26
DDX39A-220ENST00000593008 FNBP4Q8N3X1 1017 aaPredicted RBP13.41□□□□□ -0.26
DDX39A-220ENST00000593008 TMC1Q8TDI8 760 aa13.41□□□□□ -0.26
DDX39A-220ENST00000593008 POLR3AO14802 1390 aaPredicted RBP13.41□□□□□ -0.26
DDX39A-220ENST00000593008 ITSN1Q15811 1721 aa13.41□□□□□ -0.26
DDX39A-220ENST00000593008 TRPM3Q9HCF6 1732 aaPredicted RBP13.41□□□□□ -0.26
DDX39A-220ENST00000593008 ATAD2Q6PL18 1390 aa13.4□□□□□ -0.26
DDX39A-220ENST00000593008 A0A1W2PP64 1363 aa13.39□□□□□ -0.27
DDX39A-220ENST00000593008 BCL9LQ86UU0 1499 aa13.38□□□□□ -0.27
DDX39A-220ENST00000593008 FAM83GA6ND36 823 aa13.38□□□□□ -0.27
DDX39A-220ENST00000593008 RBM6P78332 1123 aaKnown RBP13.38□□□□□ -0.27
DDX39A-220ENST00000593008 ABTB2Q8N961 1025 aa13.38□□□□□ -0.27
DDX39A-220ENST00000593008 TRPC5Q9UL62 973 aaPredicted RBP13.38□□□□□ -0.27
DDX39A-220ENST00000593008 NRKQ7Z2Y5 1582 aa13.37□□□□□ -0.27
DDX39A-220ENST00000593008 AKAP12Q02952 1782 aa13.37□□□□□ -0.27
DDX39A-220ENST00000593008 ALS2Q96Q42 1657 aa13.37□□□□□ -0.27
DDX39A-220ENST00000593008 MON2Q7Z3U7 1717 aa13.36□□□□□ -0.27
DDX39A-220ENST00000593008 DDX10Q13206 875 aaKnown RBP13.36□□□□□ -0.27
DDX39A-220ENST00000593008 UNC5CLQ8IV45 518 aa13.36□□□□□ -0.27
DDX39A-220ENST00000593008 ATRNO75882 1429 aa13.36□□□□□ -0.27
DDX39A-220ENST00000593008 SLC24A1O60721 1099 aa13.35□□□□□ -0.27
DDX39A-220ENST00000593008 CARD14Q9BXL6 1004 aa13.35□□□□□ -0.27
DDX39A-220ENST00000593008 CPSF1Q10570 1443 aaKnown RBP13.35□□□□□ -0.27
DDX39A-220ENST00000593008 NSD3Q9BZ95 1437 aa13.35□□□□□ -0.27
DDX39A-220ENST00000593008 SLIT2O94813 1529 aa13.34□□□□□ -0.27
DDX39A-220ENST00000593008 ANKRD36BQ8N2N9 1353 aa13.34□□□□□ -0.27
DDX39A-220ENST00000593008 ABCA3Q99758 1704 aa13.34□□□□□ -0.27
DDX39A-220ENST00000593008 MARF1Q9Y4F3 1742 aaKnown RBP13.34□□□□□ -0.27
DDX39A-220ENST00000593008 RGS12O14924 1447 aa13.34□□□□□ -0.27
DDX39A-220ENST00000593008 USP6P35125 1406 aa13.34□□□□□ -0.27
DDX39A-220ENST00000593008 ZC3H6P61129 1189 aaKnown RBP13.34□□□□□ -0.27
DDX39A-220ENST00000593008 CDCA8Q53HL2 280 aa13.34□□□□□ -0.27
DDX39A-220ENST00000593008 PANK3Q9H999 370 aa13.34□□□□□ -0.27
DDX39A-220ENST00000593008 PRDM11Q9NQV5 511 aa13.34□□□□□ -0.27
DDX39A-220ENST00000593008 CNGB1Q14028 1251 aaPredicted RBP13.33□□□□□ -0.28
DDX39A-220ENST00000593008 CHRNA2Q15822 529 aa13.33□□□□□ -0.28
DDX39A-220ENST00000593008 GJD4Q96KN9 370 aaPredicted RBP13.33□□□□□ -0.28
DDX39A-220ENST00000593008 PUS7Q96PZ0 661 aaKnown RBP13.33□□□□□ -0.28
DDX39A-220ENST00000593008 BTG4Q9NY30 223 aa13.33□□□□□ -0.28
DDX39A-220ENST00000593008 CCDC9Q9Y3X0 531 aaKnown RBP13.33□□□□□ -0.28
DDX39A-220ENST00000593008 KTN1Q86UP2 1357 aaKnown RBP13.32□□□□□ -0.28
DDX39A-220ENST00000593008 KIAA0232Q92628 1395 aa13.32□□□□□ -0.28
DDX39A-220ENST00000593008 ZRANB1Q9UGI0 708 aa13.32□□□□□ -0.28
DDX39A-220ENST00000593008 SSH2Q76I76 1423 aa13.31□□□□□ -0.28
DDX39A-220ENST00000593008 PIK3C2AO00443 1686 aa13.31□□□□□ -0.28
DDX39A-220ENST00000593008 CDK12Q9NYV4 1490 aaPredicted RBP13.31□□□□□ -0.28
DDX39A-220ENST00000593008 NLRP6P59044 892 aa13.31□□□□□ -0.28
DDX39A-220ENST00000593008 NLRP13Q86W25 1043 aa13.31□□□□□ -0.28
DDX39A-220ENST00000593008 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.31□□□□□ -0.28
DDX39A-220ENST00000593008 NINLQ9Y2I6 1382 aa13.31□□□□□ -0.28
DDX39A-220ENST00000593008 ZBTB7CA1YPR0 619 aa13.3□□□□□ -0.28
DDX39A-220ENST00000593008 ZNF692Q9BU19 519 aaPredicted RBP13.3□□□□□ -0.28
DDX39A-220ENST00000593008 TTC21BQ7Z4L5 1316 aa13.3□□□□□ -0.28
DDX39A-220ENST00000593008 PLCH1Q4KWH8 1693 aa13.29□□□□□ -0.28
DDX39A-220ENST00000593008 SOX12O15370 315 aa13.29□□□□□ -0.28
DDX39A-220ENST00000593008 VPS72Q15906 364 aa13.29□□□□□ -0.28
DDX39A-220ENST00000593008 NME9Q86XW9 330 aa13.29□□□□□ -0.28
DDX39A-220ENST00000593008 CRYBG1Q9Y4K1 1723 aa13.29□□□□□ -0.28
DDX39A-220ENST00000593008 USP19O94966 1318 aa13.29□□□□□ -0.28
DDX39A-220ENST00000593008 GCP02774 474 aa13.28□□□□□ -0.28
DDX39A-220ENST00000593008 HDGFL2Q7Z4V5 671 aaPredicted RBP13.28□□□□□ -0.28
DDX39A-220ENST00000593008 STRN4Q9NRL3 753 aa13.28□□□□□ -0.28
DDX39A-220ENST00000593008 BRD4O60885 1362 aaPredicted RBP13.28□□□□□ -0.28
DDX39A-220ENST00000593008 EDC4Q6P2E9 1401 aaKnown RBP13.28□□□□□ -0.28
DDX39A-220ENST00000593008 PHRF1Q9P1Y6 1649 aaKnown RBP13.28□□□□□ -0.28
DDX39A-220ENST00000593008 PER1O15534 1290 aaPredicted RBP13.27□□□□□ -0.29
DDX39A-220ENST00000593008 TERF2IPQ9NYB0 399 aa13.27□□□□□ -0.29
DDX39A-220ENST00000593008 GLI3P10071 1580 aa13.27□□□□□ -0.29
DDX39A-220ENST00000593008 COL14A1Q05707 1796 aaKnown RBP13.27□□□□□ -0.29
DDX39A-220ENST00000593008 KIF20BQ96Q89 1820 aa13.27□□□□□ -0.29
DDX39A-220ENST00000593008 A0A0G2JS52 829 aa13.26□□□□□ -0.29
DDX39A-220ENST00000593008 MYT1Q01538 1121 aa13.26□□□□□ -0.29
DDX39A-220ENST00000593008 UPF1Q92900 1129 aaKnown RBP eCLIP13.26□□□□□ -0.29
DDX39A-220ENST00000593008 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.26□□□□□ -0.29
DDX39A-220ENST00000593008 TTC21AQ8NDW8 1320 aa13.25□□□□□ -0.29
DDX39A-220ENST00000593008 EVA1CP58658 441 aa13.25□□□□□ -0.29
DDX39A-220ENST00000593008 FAM98CQ17RN3 349 aaKnown RBP13.25□□□□□ -0.29
DDX39A-220ENST00000593008 AMER1Q5JTC6 1135 aaPredicted RBP13.25□□□□□ -0.29
DDX39A-220ENST00000593008 SEPT12Q8IYM1 358 aa13.25□□□□□ -0.29
DDX39A-220ENST00000593008 GGNBP2Q9H3C7 697 aa13.25□□□□□ -0.29
DDX39A-220ENST00000593008 NWD2Q9ULI1 1742 aa13.25□□□□□ -0.29
DDX39A-220ENST00000593008 CPDO75976 1380 aa13.24□□□□□ -0.29
DDX39A-220ENST00000593008 FBLN1P23142 703 aa13.24□□□□□ -0.29
DDX39A-220ENST00000593008 CC2D1BQ5T0F9 858 aaKnown RBP13.24□□□□□ -0.29
DDX39A-220ENST00000593008 USP35Q9P2H5 1018 aa13.24□□□□□ -0.29
DDX39A-220ENST00000593008 OVOS2A0A0J9YW53 1432 aa13.23□□□□□ -0.29
DDX39A-220ENST00000593008 OVOS2Q6IE36 1432 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms