RNA–Protein interactions for RNA: ENST00000590559.2

CLIP3-204, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 4

Gene CLIP3, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-204ENST00000590559 PHRF1Q9P1Y6 1649 aaKnown RBP17.22■□□□□ 0.35
CLIP3-204ENST00000590559 ZRANB1Q9UGI0 708 aa17.22■□□□□ 0.35
CLIP3-204ENST00000590559 THSD7AQ9UPZ6 1657 aa17.21■□□□□ 0.35
CLIP3-204ENST00000590559 BTG4Q9NY30 223 aa17.2■□□□□ 0.34
CLIP3-204ENST00000590559 POLR3AO14802 1390 aaPredicted RBP17.19■□□□□ 0.34
CLIP3-204ENST00000590559 PLEKHG5O94827 1062 aa17.19■□□□□ 0.34
CLIP3-204ENST00000590559 KRT27Q7Z3Y8 459 aa17.19■□□□□ 0.34
CLIP3-204ENST00000590559 NUDT16Q96DE0 195 aaKnown RBP17.18■□□□□ 0.34
CLIP3-204ENST00000590559 DEFB132Q7Z7B7 95 aa17.17■□□□□ 0.34
CLIP3-204ENST00000590559 NGDNQ8NEJ9 315 aaKnown RBP17.17■□□□□ 0.34
CLIP3-204ENST00000590559 CCDC9Q9Y3X0 531 aaKnown RBP17.16■□□□□ 0.34
CLIP3-204ENST00000590559 SPATA31A5Q5VU36 1347 aa17.16■□□□□ 0.34
CLIP3-204ENST00000590559 SPATA31A7Q8IWB4 1347 aa17.16■□□□□ 0.34
CLIP3-204ENST00000590559 RGPD1P0DJD0 1748 aa17.16■□□□□ 0.34
CLIP3-204ENST00000590559 FAM98CQ17RN3 349 aaKnown RBP17.15■□□□□ 0.34
CLIP3-204ENST00000590559 CDK19Q9BWU1 502 aa17.15■□□□□ 0.34
CLIP3-204ENST00000590559 TNS1Q9HBL0 1735 aaKnown RBP17.14■□□□□ 0.33
CLIP3-204ENST00000590559 PLEKHG3A1L390 1219 aa17.13■□□□□ 0.33
CLIP3-204ENST00000590559 NRKQ7Z2Y5 1582 aa17.13■□□□□ 0.33
CLIP3-204ENST00000590559 LMO7Q8WWI1 1683 aa17.13■□□□□ 0.33
CLIP3-204ENST00000590559 LRP5O75197 1615 aa17.12■□□□□ 0.33
CLIP3-204ENST00000590559 PAK3O75914 559 aaPredicted RBP17.12■□□□□ 0.33
CLIP3-204ENST00000590559 NBPF1Q3BBV0 1214 aa17.12■□□□□ 0.33
CLIP3-204ENST00000590559 CCDC61Q9Y6R9 512 aa17.12■□□□□ 0.33
CLIP3-204ENST00000590559 ACEP12821 1306 aa17.12■□□□□ 0.33
CLIP3-204ENST00000590559 KIAA0232Q92628 1395 aa17.12■□□□□ 0.33
CLIP3-204ENST00000590559 NBPF8Q3BBV2 869 aa17.11■□□□□ 0.33
CLIP3-204ENST00000590559 SF3B2Q13435 895 aaKnown RBP17.1■□□□□ 0.33
CLIP3-204ENST00000590559 PRDM11Q9NQV5 511 aa17.1■□□□□ 0.33
CLIP3-204ENST00000590559 SPATA31A1Q5TZJ5 1347 aa17.1■□□□□ 0.33
CLIP3-204ENST00000590559 QRICH2Q9H0J4 1663 aa17.1■□□□□ 0.33
CLIP3-204ENST00000590559 DISP2A7MBM2 1401 aa17.09■□□□□ 0.33
CLIP3-204ENST00000590559 CAMTA1Q9Y6Y1 1673 aa17.08■□□□□ 0.32
CLIP3-204ENST00000590559 USP19O94966 1318 aa17.08■□□□□ 0.32
CLIP3-204ENST00000590559 CPDO75976 1380 aa17.07■□□□□ 0.32
CLIP3-204ENST00000590559 BAG6P46379 1132 aa17.06■□□□□ 0.32
CLIP3-204ENST00000590559 CHRNA2Q15822 529 aa17.06■□□□□ 0.32
CLIP3-204ENST00000590559 FAM182BQ5T319 152 aa17.06■□□□□ 0.32
CLIP3-204ENST00000590559 TRPM1Q7Z4N2 1603 aa17.06■□□□□ 0.32
CLIP3-204ENST00000590559 PPIP5K1Q6PFW1 1433 aa17.05■□□□□ 0.32
CLIP3-204ENST00000590559 A0A0G2JS52 829 aa17.05■□□□□ 0.32
CLIP3-204ENST00000590559 ZC3H6P61129 1189 aaKnown RBP17.05■□□□□ 0.32
CLIP3-204ENST00000590559 MYT1Q01538 1121 aa17.05■□□□□ 0.32
CLIP3-204ENST00000590559 NUTM2GQ5VZR2 741 aa17.05■□□□□ 0.32
CLIP3-204ENST00000590559 SSH2Q76I76 1423 aa17.04■□□□□ 0.32
CLIP3-204ENST00000590559 CENPJQ9HC77 1338 aaPredicted RBP17.04■□□□□ 0.32
CLIP3-204ENST00000590559 BRD4O60885 1362 aaPredicted RBP17.03■□□□□ 0.32
CLIP3-204ENST00000590559 BARGINQ6ZT62 677 aa17.03■□□□□ 0.32
CLIP3-204ENST00000590559 PARP4Q9UKK3 1724 aaKnown RBP17.03■□□□□ 0.32
CLIP3-204ENST00000590559 RREB1Q92766 1687 aa17.02■□□□□ 0.32
CLIP3-204ENST00000590559 EN1Q05925 392 aaPredicted RBP17.02■□□□□ 0.32
CLIP3-204ENST00000590559 ABTB2Q8N961 1025 aa17.02■□□□□ 0.32
CLIP3-204ENST00000590559 COL18A1P39060 1754 aa17.02■□□□□ 0.31
CLIP3-204ENST00000590559 SLIT3O75094 1523 aa17.01■□□□□ 0.31
CLIP3-204ENST00000590559 CABP2Q9NPB3 220 aa17.01■□□□□ 0.31
CLIP3-204ENST00000590559 PIK3C2AO00443 1686 aa17.01■□□□□ 0.31
CLIP3-204ENST00000590559 AKAP12Q02952 1782 aa17■□□□□ 0.31
CLIP3-204ENST00000590559 USP6P35125 1406 aa17■□□□□ 0.31
CLIP3-204ENST00000590559 L3MBTL2Q969R5 705 aa17■□□□□ 0.31
CLIP3-204ENST00000590559 STRN4Q9NRL3 753 aa17■□□□□ 0.31
CLIP3-204ENST00000590559 COL5A2P05997 1499 aaPredicted RBP16.99■□□□□ 0.31
CLIP3-204ENST00000590559 GCP02774 474 aa16.99■□□□□ 0.31
CLIP3-204ENST00000590559 SRPK2P78362 688 aaKnown RBP16.99■□□□□ 0.31
CLIP3-204ENST00000590559 LARP1Q6PKG0 1096 aaKnown RBP16.99■□□□□ 0.31
CLIP3-204ENST00000590559 FAM196AQ6ZSG2 479 aa16.99■□□□□ 0.31
CLIP3-204ENST00000590559 NLRP13Q86W25 1043 aa16.99■□□□□ 0.31
CLIP3-204ENST00000590559 CAMKK2Q96RR4 588 aa16.99■□□□□ 0.31
CLIP3-204ENST00000590559 PEAK1Q9H792 1746 aa16.98■□□□□ 0.31
CLIP3-204ENST00000590559 NUP188Q5SRE5 1749 aa16.97■□□□□ 0.31
CLIP3-204ENST00000590559 PSDA5PKW4 1024 aaPredicted RBP16.97■□□□□ 0.31
CLIP3-204ENST00000590559 CABP1Q9NZU7 370 aa16.97■□□□□ 0.31
CLIP3-204ENST00000590559 SBF2Q86WG5 1849 aa16.97■□□□□ 0.31
CLIP3-204ENST00000590559 WNK3Q9BYP7 1800 aa16.97■□□□□ 0.31
CLIP3-204ENST00000590559 TRIM37O94972 964 aa16.96■□□□□ 0.31
CLIP3-204ENST00000590559 EZH2Q15910 746 aaKnown RBP16.96■□□□□ 0.31
CLIP3-204ENST00000590559 TCP11L2Q8N4U5 519 aa16.96■□□□□ 0.31
CLIP3-204ENST00000590559 THRAP3Q9Y2W1 955 aaKnown RBP16.96■□□□□ 0.31
CLIP3-204ENST00000590559 AATKQ6ZMQ8 1374 aa16.95■□□□□ 0.3
CLIP3-204ENST00000590559 PARD3Q8TEW0 1356 aa16.95■□□□□ 0.3
CLIP3-204ENST00000590559 EVA1CP58658 441 aa16.95■□□□□ 0.3
CLIP3-204ENST00000590559 USP35Q9P2H5 1018 aa16.95■□□□□ 0.3
CLIP3-204ENST00000590559 RGPD5Q99666 1765 aa16.94■□□□□ 0.3
CLIP3-204ENST00000590559 SIN3AQ96ST3 1273 aa16.94■□□□□ 0.3
CLIP3-204ENST00000590559 CRB1P82279 1406 aa16.94■□□□□ 0.3
CLIP3-204ENST00000590559 LRRC37A3O60309 1634 aa16.93■□□□□ 0.3
CLIP3-204ENST00000590559 RGPD3A6NKT7 1758 aaPredicted RBP16.92■□□□□ 0.3
CLIP3-204ENST00000590559 RGPD4Q7Z3J3 1758 aa16.92■□□□□ 0.3
CLIP3-204ENST00000590559 R3HDM1Q15032 1099 aaKnown RBP16.92■□□□□ 0.3
CLIP3-204ENST00000590559 EVC2Q86UK5 1308 aa16.92■□□□□ 0.3
CLIP3-204ENST00000590559 MON2Q7Z3U7 1717 aa16.91■□□□□ 0.3
CLIP3-204ENST00000590559 CPSF1Q10570 1443 aaKnown RBP16.91■□□□□ 0.3
CLIP3-204ENST00000590559 NLRP6P59044 892 aa16.91■□□□□ 0.3
CLIP3-204ENST00000590559 PDE3BQ13370 1112 aa16.91■□□□□ 0.3
CLIP3-204ENST00000590559 USP54Q70EL1 1684 aa16.91■□□□□ 0.3
CLIP3-204ENST00000590559 APBA3O96018 575 aa16.9■□□□□ 0.3
CLIP3-204ENST00000590559 AXIN2Q9Y2T1 843 aa16.89■□□□□ 0.29
CLIP3-204ENST00000590559 NFAT5O94916 1531 aa16.89■□□□□ 0.29
CLIP3-204ENST00000590559 ROCK2O75116 1388 aaKnown RBP16.89■□□□□ 0.29
CLIP3-204ENST00000590559 ZNF692Q9BU19 519 aaPredicted RBP16.88■□□□□ 0.29
CLIP3-204ENST00000590559 TTC21BQ7Z4L5 1316 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms