RNA–Protein interactions for RNA: ENST00000585847.5

VMP1-202, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-202ENST00000585847 SSH2Q76I76 1423 aa17.46■□□□□ 0.39
VMP1-202ENST00000585847 NRKQ7Z2Y5 1582 aa17.45■□□□□ 0.38
VMP1-202ENST00000585847 NINLQ9Y2I6 1382 aa17.45■□□□□ 0.38
VMP1-202ENST00000585847 XPCQ01831 940 aaPredicted RBP17.45■□□□□ 0.38
VMP1-202ENST00000585847 UPF1Q92900 1129 aaKnown RBP eCLIP17.45■□□□□ 0.38
VMP1-202ENST00000585847 NPHP3Q7Z494 1330 aa17.45■□□□□ 0.38
VMP1-202ENST00000585847 A0A1W2PP64 1363 aa17.44■□□□□ 0.38
VMP1-202ENST00000585847 KRT28Q7Z3Y7 464 aa17.44■□□□□ 0.38
VMP1-202ENST00000585847 NGDNQ8NEJ9 315 aaKnown RBP17.44■□□□□ 0.38
VMP1-202ENST00000585847 TMC1Q8TDI8 760 aa17.44■□□□□ 0.38
VMP1-202ENST00000585847 USP6P35125 1406 aa17.44■□□□□ 0.38
VMP1-202ENST00000585847 ALS2Q96Q42 1657 aa17.43■□□□□ 0.38
VMP1-202ENST00000585847 POLR3GLQ9BT43 218 aa17.43■□□□□ 0.38
VMP1-202ENST00000585847 ANKRD36BQ8N2N9 1353 aa17.42■□□□□ 0.38
VMP1-202ENST00000585847 LRRC59Q96AG4 307 aaKnown RBP17.42■□□□□ 0.38
VMP1-202ENST00000585847 AFF2P51816 1311 aa17.42■□□□□ 0.38
VMP1-202ENST00000585847 SBNO1A3KN83 1393 aa17.4■□□□□ 0.38
VMP1-202ENST00000585847 CDK12Q9NYV4 1490 aaPredicted RBP17.4■□□□□ 0.38
VMP1-202ENST00000585847 PSME1Q06323 249 aa17.4■□□□□ 0.38
VMP1-202ENST00000585847 CARD14Q9BXL6 1004 aa17.4■□□□□ 0.38
VMP1-202ENST00000585847 ZNF692Q9BU19 519 aaPredicted RBP17.39■□□□□ 0.37
VMP1-202ENST00000585847 SPATA31A3Q5VYP0 1347 aa17.39■□□□□ 0.37
VMP1-202ENST00000585847 KTN1Q86UP2 1357 aaKnown RBP17.39■□□□□ 0.37
VMP1-202ENST00000585847 TNS3Q68CZ2 1445 aa17.38■□□□□ 0.37
VMP1-202ENST00000585847 MARF1Q9Y4F3 1742 aaKnown RBP17.38■□□□□ 0.37
VMP1-202ENST00000585847 C8orf37Q96NL8 207 aa17.38■□□□□ 0.37
VMP1-202ENST00000585847 PIK3C2AO00443 1686 aa17.38■□□□□ 0.37
VMP1-202ENST00000585847 TERF2IPQ9NYB0 399 aa17.37■□□□□ 0.37
VMP1-202ENST00000585847 TTC21BQ7Z4L5 1316 aa17.37■□□□□ 0.37
VMP1-202ENST00000585847 BRD4O60885 1362 aaPredicted RBP17.37■□□□□ 0.37
VMP1-202ENST00000585847 PNPLA6Q8IY17 1366 aa17.37■□□□□ 0.37
VMP1-202ENST00000585847 CRYBG1Q9Y4K1 1723 aa17.36■□□□□ 0.37
VMP1-202ENST00000585847 HDGFL2Q7Z4V5 671 aaPredicted RBP17.36■□□□□ 0.37
VMP1-202ENST00000585847 PANK3Q9H999 370 aa17.36■□□□□ 0.37
VMP1-202ENST00000585847 EDC4Q6P2E9 1401 aaKnown RBP17.36■□□□□ 0.37
VMP1-202ENST00000585847 COL22A1Q8NFW1 1626 aaPredicted RBP17.36■□□□□ 0.37
VMP1-202ENST00000585847 USP54Q70EL1 1684 aa17.34■□□□□ 0.37
VMP1-202ENST00000585847 NSD3Q9BZ95 1437 aa17.34■□□□□ 0.37
VMP1-202ENST00000585847 QTRT2Q9H974 415 aaKnown RBP17.34■□□□□ 0.37
VMP1-202ENST00000585847 ABCA3Q99758 1704 aa17.33■□□□□ 0.37
VMP1-202ENST00000585847 PER1O15534 1290 aaPredicted RBP17.33■□□□□ 0.36
VMP1-202ENST00000585847 RBM6P78332 1123 aaKnown RBP17.33■□□□□ 0.36
VMP1-202ENST00000585847 DDX10Q13206 875 aaKnown RBP17.33■□□□□ 0.36
VMP1-202ENST00000585847 ZRANB1Q9UGI0 708 aa17.33■□□□□ 0.36
VMP1-202ENST00000585847 TTC21AQ8NDW8 1320 aa17.32■□□□□ 0.36
VMP1-202ENST00000585847 PAK3O75914 559 aaPredicted RBP17.32■□□□□ 0.36
VMP1-202ENST00000585847 NGLY1Q96IV0 654 aa17.32■□□□□ 0.36
VMP1-202ENST00000585847 KIF20BQ96Q89 1820 aa17.31■□□□□ 0.36
VMP1-202ENST00000585847 ADAMTS2O95450 1211 aa17.31■□□□□ 0.36
VMP1-202ENST00000585847 NME9Q86XW9 330 aa17.31■□□□□ 0.36
VMP1-202ENST00000585847 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.31■□□□□ 0.36
VMP1-202ENST00000585847 RGS12O14924 1447 aa17.3■□□□□ 0.36
VMP1-202ENST00000585847 USP31Q70CQ4 1352 aa17.3■□□□□ 0.36
VMP1-202ENST00000585847 ANP32CO43423 234 aa17.3■□□□□ 0.36
VMP1-202ENST00000585847 ARHGEF10O15013 1369 aa17.29■□□□□ 0.36
VMP1-202ENST00000585847 PHRF1Q9P1Y6 1649 aaKnown RBP17.29■□□□□ 0.36
VMP1-202ENST00000585847 FYB1O15117 783 aa17.29■□□□□ 0.36
VMP1-202ENST00000585847 NUTM2GQ5VZR2 741 aa17.29■□□□□ 0.36
VMP1-202ENST00000585847 OVOS2A0A0J9YW53 1432 aa17.29■□□□□ 0.36
VMP1-202ENST00000585847 OVOS2Q6IE36 1432 aa17.29■□□□□ 0.36
VMP1-202ENST00000585847 USP19O94966 1318 aa17.28■□□□□ 0.36
VMP1-202ENST00000585847 SLIT3O75094 1523 aa17.28■□□□□ 0.36
VMP1-202ENST00000585847 ABTB2Q8N961 1025 aa17.28■□□□□ 0.36
VMP1-202ENST00000585847 AMER1Q5JTC6 1135 aaPredicted RBP17.27■□□□□ 0.36
VMP1-202ENST00000585847 CABLES1Q8TDN4 633 aa17.27■□□□□ 0.36
VMP1-202ENST00000585847 ANKRD26Q9UPS8 1709 aa17.27■□□□□ 0.35
VMP1-202ENST00000585847 CCER2I3L3R5 266 aa17.26■□□□□ 0.35
VMP1-202ENST00000585847 LMOD2Q6P5Q4 547 aa17.26■□□□□ 0.35
VMP1-202ENST00000585847 USP21Q9UK80 565 aa17.26■□□□□ 0.35
VMP1-202ENST00000585847 NLRP6P59044 892 aa17.25■□□□□ 0.35
VMP1-202ENST00000585847 GGNBP2Q9H3C7 697 aa17.25■□□□□ 0.35
VMP1-202ENST00000585847 NFAT5O94916 1531 aa17.23■□□□□ 0.35
VMP1-202ENST00000585847 NLRP13Q86W25 1043 aa17.23■□□□□ 0.35
VMP1-202ENST00000585847 TRPC5Q9UL62 973 aaPredicted RBP17.23■□□□□ 0.35
VMP1-202ENST00000585847 PLEKHG5O94827 1062 aa17.22■□□□□ 0.35
VMP1-202ENST00000585847 NPC1L1Q9UHC9 1359 aa17.22■□□□□ 0.35
VMP1-202ENST00000585847 CGNL1Q0VF96 1302 aa17.21■□□□□ 0.35
VMP1-202ENST00000585847 KNSTRNQ9Y448 316 aa17.21■□□□□ 0.35
VMP1-202ENST00000585847 GCP02774 474 aa17.2■□□□□ 0.34
VMP1-202ENST00000585847 FBLN1P23142 703 aa17.2■□□□□ 0.34
VMP1-202ENST00000585847 COL18A1P39060 1754 aa17.19■□□□□ 0.34
VMP1-202ENST00000585847 NSD2O96028 1365 aa17.18■□□□□ 0.34
VMP1-202ENST00000585847 MIER1Q8N108 512 aa17.18■□□□□ 0.34
VMP1-202ENST00000585847 COG3Q96JB2 828 aa17.18■□□□□ 0.34
VMP1-202ENST00000585847 RALBP1Q15311 655 aa17.17■□□□□ 0.34
VMP1-202ENST00000585847 FNBP4Q8N3X1 1017 aaPredicted RBP17.17■□□□□ 0.34
VMP1-202ENST00000585847 LTN1O94822 1766 aa17.17■□□□□ 0.34
VMP1-202ENST00000585847 MAP2P11137 1827 aaKnown RBP17.17■□□□□ 0.34
VMP1-202ENST00000585847 CPDO75976 1380 aa17.15■□□□□ 0.34
VMP1-202ENST00000585847 KIAA0232Q92628 1395 aa17.15■□□□□ 0.34
VMP1-202ENST00000585847 ZC3H6P61129 1189 aaKnown RBP17.15■□□□□ 0.34
VMP1-202ENST00000585847 CC2D1BQ5T0F9 858 aaKnown RBP17.15■□□□□ 0.34
VMP1-202ENST00000585847 ARHGEF25Q86VW2 580 aa17.15■□□□□ 0.34
VMP1-202ENST00000585847 LMO7Q8WWI1 1683 aa17.15■□□□□ 0.34
VMP1-202ENST00000585847 PEAK1Q9H792 1746 aa17.15■□□□□ 0.34
VMP1-202ENST00000585847 RGPD5Q99666 1765 aa17.15■□□□□ 0.34
VMP1-202ENST00000585847 ATRNO75882 1429 aa17.14■□□□□ 0.33
VMP1-202ENST00000585847 FAM83GA6ND36 823 aa17.14■□□□□ 0.33
VMP1-202ENST00000585847 SOX12O15370 315 aa17.14■□□□□ 0.33
VMP1-202ENST00000585847 KCNH5Q8NCM2 988 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 95.6 ms