RNA–Protein interactions for RNA: ENST00000585229.1

SMCHD1-212, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 555 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-212ENST00000585229 POGKQ9P215 609 aa13.73□□□□□ -0.21
SMCHD1-212ENST00000585229 CDC42BPGQ6DT37 1551 aa13.72□□□□□ -0.21
SMCHD1-212ENST00000585229 EVC2Q86UK5 1308 aa13.71□□□□□ -0.21
SMCHD1-212ENST00000585229 SP7Q8TDD2 431 aaPredicted RBP13.71□□□□□ -0.21
SMCHD1-212ENST00000585229 TOPAZ1Q8N9V7 1692 aa13.71□□□□□ -0.21
SMCHD1-212ENST00000585229 NCOA3Q9Y6Q9 1424 aa13.71□□□□□ -0.22
SMCHD1-212ENST00000585229 FMN2Q9NZ56 1722 aa13.7□□□□□ -0.22
SMCHD1-212ENST00000585229 ADGRL3Q9HAR2 1447 aa13.7□□□□□ -0.22
SMCHD1-212ENST00000585229 XIRP1Q702N8 1843 aaKnown RBP13.69□□□□□ -0.22
SMCHD1-212ENST00000585229 MINK1Q8N4C8 1332 aaPredicted RBP13.69□□□□□ -0.22
SMCHD1-212ENST00000585229 MS4A3Q96HJ5 214 aa13.69□□□□□ -0.22
SMCHD1-212ENST00000585229 USP32Q8NFA0 1604 aa13.68□□□□□ -0.22
SMCHD1-212ENST00000585229 RGL2O15211 777 aa13.68□□□□□ -0.22
SMCHD1-212ENST00000585229 SAFB2Q14151 953 aaKnown RBP eCLIP13.68□□□□□ -0.22
SMCHD1-212ENST00000585229 ATAD2Q6PL18 1390 aa13.68□□□□□ -0.22
SMCHD1-212ENST00000585229 NINLQ9Y2I6 1382 aa13.68□□□□□ -0.22
SMCHD1-212ENST00000585229 ATP7BP35670 1465 aa13.67□□□□□ -0.22
SMCHD1-212ENST00000585229 ITSN1Q15811 1721 aa13.67□□□□□ -0.22
SMCHD1-212ENST00000585229 WASLO00401 505 aaPredicted RBP13.67□□□□□ -0.22
SMCHD1-212ENST00000585229 GALR2O43603 387 aaPredicted RBP13.67□□□□□ -0.22
SMCHD1-212ENST00000585229 GABBR2O75899 941 aa13.67□□□□□ -0.22
SMCHD1-212ENST00000585229 DDX10Q13206 875 aaKnown RBP13.66□□□□□ -0.22
SMCHD1-212ENST00000585229 IFNL1Q8IU54 200 aa13.66□□□□□ -0.22
SMCHD1-212ENST00000585229 PCDHB13Q9Y5F0 798 aa13.66□□□□□ -0.22
SMCHD1-212ENST00000585229 CDK19Q9BWU1 502 aa13.65□□□□□ -0.22
SMCHD1-212ENST00000585229 DCCP43146 1447 aa13.64□□□□□ -0.23
SMCHD1-212ENST00000585229 ANKARQ7Z5J8 1434 aa13.64□□□□□ -0.23
SMCHD1-212ENST00000585229 DIEXFQ68CQ4 756 aaKnown RBP13.64□□□□□ -0.23
SMCHD1-212ENST00000585229 PCDHB8Q9UN66 801 aa13.64□□□□□ -0.23
SMCHD1-212ENST00000585229 LRRC7Q96NW7 1537 aa13.64□□□□□ -0.23
SMCHD1-212ENST00000585229 AKAP12Q02952 1782 aa13.63□□□□□ -0.23
SMCHD1-212ENST00000585229 SGIP1Q9BQI5 828 aa13.63□□□□□ -0.23
SMCHD1-212ENST00000585229 CABP2Q9NPB3 220 aa13.63□□□□□ -0.23
SMCHD1-212ENST00000585229 TRPC6Q9Y210 931 aa13.63□□□□□ -0.23
SMCHD1-212ENST00000585229 RGPD8O14715 1765 aaPredicted RBP13.63□□□□□ -0.23
SMCHD1-212ENST00000585229 CD163L1Q9NR16 1453 aa13.62□□□□□ -0.23
SMCHD1-212ENST00000585229 TMEM94Q12767 1356 aa13.62□□□□□ -0.23
SMCHD1-212ENST00000585229 LTBP4Q8N2S1 1624 aa13.62□□□□□ -0.23
SMCHD1-212ENST00000585229 ZNF335Q9H4Z2 1342 aaPredicted RBP13.62□□□□□ -0.23
SMCHD1-212ENST00000585229 PRR36Q9H6K5 1346 aa13.62□□□□□ -0.23
SMCHD1-212ENST00000585229 MON2Q7Z3U7 1717 aa13.61□□□□□ -0.23
SMCHD1-212ENST00000585229 SRPK2P78362 688 aaKnown RBP13.61□□□□□ -0.23
SMCHD1-212ENST00000585229 PROSER2Q86WR7 435 aaPredicted RBP13.61□□□□□ -0.23
SMCHD1-212ENST00000585229 ANKRD36BQ8N2N9 1353 aa13.6□□□□□ -0.23
SMCHD1-212ENST00000585229 POLR3GLQ9BT43 218 aa13.6□□□□□ -0.23
SMCHD1-212ENST00000585229 PER1O15534 1290 aaPredicted RBP13.59□□□□□ -0.23
SMCHD1-212ENST00000585229 NUDT16Q96DE0 195 aaKnown RBP13.59□□□□□ -0.23
SMCHD1-212ENST00000585229 NRKQ7Z2Y5 1582 aa13.58□□□□□ -0.23
SMCHD1-212ENST00000585229 CPSF1Q10570 1443 aaKnown RBP13.58□□□□□ -0.24
SMCHD1-212ENST00000585229 PPIP5K1Q6PFW1 1433 aa13.58□□□□□ -0.24
SMCHD1-212ENST00000585229 PANK3Q9H999 370 aa13.58□□□□□ -0.24
SMCHD1-212ENST00000585229 NPC1L1Q9UHC9 1359 aa13.58□□□□□ -0.24
SMCHD1-212ENST00000585229 KIF1AQ12756 1690 aa13.57□□□□□ -0.24
SMCHD1-212ENST00000585229 PLEKHG3A1L390 1219 aa13.57□□□□□ -0.24
SMCHD1-212ENST00000585229 CLCN6P51797 869 aa13.57□□□□□ -0.24
SMCHD1-212ENST00000585229 SLC12A5Q9H2X9 1139 aa13.57□□□□□ -0.24
SMCHD1-212ENST00000585229 C19orf44Q9H6X5 657 aa13.57□□□□□ -0.24
SMCHD1-212ENST00000585229 A0A1W2PP64 1363 aa13.57□□□□□ -0.24
SMCHD1-212ENST00000585229 RIOK3O14730 519 aaKnown RBP13.56□□□□□ -0.24
SMCHD1-212ENST00000585229 ZNF467Q7Z7K2 595 aaPredicted RBP13.56□□□□□ -0.24
SMCHD1-212ENST00000585229 ANKRD26Q9UPS8 1709 aa13.56□□□□□ -0.24
SMCHD1-212ENST00000585229 MST1RQ04912 1400 aa13.56□□□□□ -0.24
SMCHD1-212ENST00000585229 POLR3AO14802 1390 aaPredicted RBP13.55□□□□□ -0.24
SMCHD1-212ENST00000585229 MSH6P52701 1360 aa13.55□□□□□ -0.24
SMCHD1-212ENST00000585229 KIF20BQ96Q89 1820 aa13.55□□□□□ -0.24
SMCHD1-212ENST00000585229 C1orf167Q5SNV9 1468 aa13.55□□□□□ -0.24
SMCHD1-212ENST00000585229 RBM33Q96EV2 1170 aaKnown RBP13.54□□□□□ -0.24
SMCHD1-212ENST00000585229 CARD14Q9BXL6 1004 aa13.54□□□□□ -0.24
SMCHD1-212ENST00000585229 CABP1Q9NZU7 370 aa13.54□□□□□ -0.24
SMCHD1-212ENST00000585229 NSD3Q9BZ95 1437 aa13.54□□□□□ -0.24
SMCHD1-212ENST00000585229 TMC1Q8TDI8 760 aa13.53□□□□□ -0.24
SMCHD1-212ENST00000585229 TERF2IPQ9NYB0 399 aa13.53□□□□□ -0.24
SMCHD1-212ENST00000585229 KTN1Q86UP2 1357 aaKnown RBP13.53□□□□□ -0.24
SMCHD1-212ENST00000585229 EDC4Q6P2E9 1401 aaKnown RBP13.53□□□□□ -0.24
SMCHD1-212ENST00000585229 SSH2Q76I76 1423 aa13.52□□□□□ -0.25
SMCHD1-212ENST00000585229 USP54Q70EL1 1684 aa13.52□□□□□ -0.25
SMCHD1-212ENST00000585229 USP6P35125 1406 aa13.51□□□□□ -0.25
SMCHD1-212ENST00000585229 NSD2O96028 1365 aa13.51□□□□□ -0.25
SMCHD1-212ENST00000585229 PARD3Q8TEW0 1356 aa13.51□□□□□ -0.25
SMCHD1-212ENST00000585229 HDGFL2Q7Z4V5 671 aaPredicted RBP13.51□□□□□ -0.25
SMCHD1-212ENST00000585229 C14orf37Q86TY3 774 aa13.51□□□□□ -0.25
SMCHD1-212ENST00000585229 CADPS2Q86UW7 1296 aa13.51□□□□□ -0.25
SMCHD1-212ENST00000585229 IQSEC2Q5JU85 1478 aa13.5□□□□□ -0.25
SMCHD1-212ENST00000585229 BRD4O60885 1362 aaPredicted RBP13.5□□□□□ -0.25
SMCHD1-212ENST00000585229 KNSTRNQ9Y448 316 aa13.5□□□□□ -0.25
SMCHD1-212ENST00000585229 ACEP12821 1306 aa13.49□□□□□ -0.25
SMCHD1-212ENST00000585229 ANP32CO43423 234 aa13.49□□□□□ -0.25
SMCHD1-212ENST00000585229 PRKRIP1Q9H875 184 aaPredicted RBP13.49□□□□□ -0.25
SMCHD1-212ENST00000585229 TRPM3Q9HCF6 1732 aaPredicted RBP13.49□□□□□ -0.25
SMCHD1-212ENST00000585229 ATF3P18847 181 aa13.48□□□□□ -0.25
SMCHD1-212ENST00000585229 PHF8Q9UPP1 1060 aa13.48□□□□□ -0.25
SMCHD1-212ENST00000585229 CGNL1Q0VF96 1302 aa13.47□□□□□ -0.25
SMCHD1-212ENST00000585229 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.47□□□□□ -0.25
SMCHD1-212ENST00000585229 NUTM2FA1L443 756 aa13.47□□□□□ -0.25
SMCHD1-212ENST00000585229 POTEIP0CG38 1075 aa13.47□□□□□ -0.25
SMCHD1-212ENST00000585229 PSEN1P49768 467 aa13.47□□□□□ -0.25
SMCHD1-212ENST00000585229 RALBP1Q15311 655 aa13.47□□□□□ -0.25
SMCHD1-212ENST00000585229 ZFP91Q96JP5 570 aaPredicted RBP13.47□□□□□ -0.25
SMCHD1-212ENST00000585229 BMP2KQ9NSY1 1161 aaPredicted RBP13.47□□□□□ -0.25
SMCHD1-212ENST00000585229 NHSL1Q5SYE7 1610 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms