RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-223ENST00000583595 CLK2P49760 499 aaKnown RBP8.62□□□□□ -1.03
SS18-223ENST00000583595 SKOR1P84550 965 aa8.62□□□□□ -1.03
SS18-223ENST00000583595 TTC24A2A3L6 582 aaPredicted RBP8.61□□□□□ -1.03
SS18-223ENST00000583595 LILRB3O75022 631 aa8.61□□□□□ -1.03
SS18-223ENST00000583595 WNT7BP56706 349 aa8.61□□□□□ -1.03
SS18-223ENST00000583595 KCNH2Q12809 1159 aa8.61□□□□□ -1.03
SS18-223ENST00000583595 LYPD8Q6UX82 237 aa8.61□□□□□ -1.03
SS18-223ENST00000583595 DDRGK1Q96HY6 314 aa8.61□□□□□ -1.03
SS18-223ENST00000583595 MYT1Q01538 1121 aa8.6□□□□□ -1.03
SS18-223ENST00000583595 RC3H1Q5TC82 1133 aaKnown RBP8.6□□□□□ -1.03
SS18-223ENST00000583595 TSC1Q92574 1164 aa8.6□□□□□ -1.03
SS18-223ENST00000583595 MRGPRX2Q96LB1 330 aa8.6□□□□□ -1.03
SS18-223ENST00000583595 FLIIQ13045 1269 aa8.59□□□□□ -1.03
SS18-223ENST00000583595 RTL5Q5HYW3 569 aaPredicted RBP8.59□□□□□ -1.03
SS18-223ENST00000583595 SNIP1Q8TAD8 396 aaKnown RBP8.59□□□□□ -1.03
SS18-223ENST00000583595 UNC93B1Q9H1C4 597 aa8.59□□□□□ -1.03
SS18-223ENST00000583595 CTHP32929 405 aa8.58□□□□□ -1.04
SS18-223ENST00000583595 CLUAP1Q96AJ1 413 aa8.58□□□□□ -1.04
SS18-223ENST00000583595 PER1O15534 1290 aaPredicted RBP8.57□□□□□ -1.04
SS18-223ENST00000583595 PDIA4P13667 645 aaKnown RBP8.57□□□□□ -1.04
SS18-223ENST00000583595 SH3BP2P78314 561 aa8.57□□□□□ -1.04
SS18-223ENST00000583595 SKIV2LQ15477 1246 aaKnown RBP8.57□□□□□ -1.04
SS18-223ENST00000583595 BAP1Q92560 729 aa8.57□□□□□ -1.04
SS18-223ENST00000583595 LINC01559Q495D7 138 aa8.56□□□□□ -1.04
SS18-223ENST00000583595 SH3D19Q5HYK7 790 aa8.56□□□□□ -1.04
SS18-223ENST00000583595 ATP1B4Q9UN42 357 aaPredicted RBP8.56□□□□□ -1.04
SS18-223ENST00000583595 PROCA1Q8NCQ7 364 aaPredicted RBP8.55□□□□□ -1.04
SS18-223ENST00000583595 MAP10Q9P2G4 905 aa8.55□□□□□ -1.04
SS18-223ENST00000583595 J3QL48 77 aa8.54□□□□□ -1.04
SS18-223ENST00000583595 F12P00748 615 aaPredicted RBP8.54□□□□□ -1.04
SS18-223ENST00000583595 SMPD1P17405 629 aa8.54□□□□□ -1.04
SS18-223ENST00000583595 EHBP1Q8NDI1 1231 aa8.54□□□□□ -1.04
SS18-223ENST00000583595 HELBQ8NG08 1087 aaPredicted RBP8.54□□□□□ -1.04
SS18-223ENST00000583595 ST8SIA5O15466 376 aa8.53□□□□□ -1.04
SS18-223ENST00000583595 TRAK2O60296 914 aa8.53□□□□□ -1.04
SS18-223ENST00000583595 CCDC82Q8N4S0 544 aa8.53□□□□□ -1.04
SS18-223ENST00000583595 ZNF511Q8NB15 262 aa8.53□□□□□ -1.04
SS18-223ENST00000583595 AAASQ9NRG9 546 aa8.53□□□□□ -1.04
SS18-223ENST00000583595 AVPP01185 164 aa8.52□□□□□ -1.05
SS18-223ENST00000583595 FBXO31Q5XUX0 539 aaPredicted RBP8.52□□□□□ -1.05
SS18-223ENST00000583595 ZBTB7CA1YPR0 619 aa8.51□□□□□ -1.05
SS18-223ENST00000583595 A6NJR5 290 aa8.51□□□□□ -1.05
SS18-223ENST00000583595 SIAH2O43255 324 aa8.51□□□□□ -1.05
SS18-223ENST00000583595 ALDH1A1P00352 501 aa8.51□□□□□ -1.05
SS18-223ENST00000583595 ZNF787Q6DD87 383 aa8.51□□□□□ -1.05
SS18-223ENST00000583595 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.51□□□□□ -1.05
SS18-223ENST00000583595 CTDSPL2Q05D32 466 aa8.5□□□□□ -1.05
SS18-223ENST00000583595 CRIPAKQ8N1N5 446 aa8.5□□□□□ -1.05
SS18-223ENST00000583595 AXIN1O15169 862 aa8.49□□□□□ -1.05
SS18-223ENST00000583595 CTC1Q2NKJ3 1217 aa8.49□□□□□ -1.05
SS18-223ENST00000583595 GOPCQ9HD26 462 aa8.49□□□□□ -1.05
SS18-223ENST00000583595 VARSP26640 1264 aaKnown RBP8.48□□□□□ -1.05
SS18-223ENST00000583595 PPP2R2DQ66LE6 453 aa8.48□□□□□ -1.05
SS18-223ENST00000583595 HPS1Q92902 700 aa8.48□□□□□ -1.05
SS18-223ENST00000583595 FOXJ1Q92949 421 aa8.48□□□□□ -1.05
SS18-223ENST00000583595 ZNF777Q9ULD5 760 aaPredicted RBP8.48□□□□□ -1.05
SS18-223ENST00000583595 SMCPP49901 116 aaPredicted RBP8.47□□□□□ -1.05
SS18-223ENST00000583595 PCMTD1Q96MG8 357 aaPredicted RBP8.47□□□□□ -1.05
SS18-223ENST00000583595 DACH1Q9UI36 760 aa8.47□□□□□ -1.05
SS18-223ENST00000583595 WASF2Q9Y6W5 498 aa8.47□□□□□ -1.05
SS18-223ENST00000583595 POTECB2RU33 542 aa8.46□□□□□ -1.06
SS18-223ENST00000583595 AP1G2O75843 785 aa8.46□□□□□ -1.06
SS18-223ENST00000583595 ARMC2Q8NEN0 867 aa8.46□□□□□ -1.06
SS18-223ENST00000583595 LRRN4Q8WUT4 740 aa8.46□□□□□ -1.06
SS18-223ENST00000583595 CCDC9Q9Y3X0 531 aaKnown RBP8.46□□□□□ -1.06
SS18-223ENST00000583595 AGERQ15109 404 aa8.45□□□□□ -1.06
SS18-223ENST00000583595 TLL2Q9Y6L7 1015 aa8.45□□□□□ -1.06
SS18-223ENST00000583595 FAM174AQ8TBP5 190 aa8.44□□□□□ -1.06
SS18-223ENST00000583595 C4orf48Q5BLP8 95 aa8.43□□□□□ -1.06
SS18-223ENST00000583595 NBPF14Q5TI25 921 aa8.43□□□□□ -1.06
SS18-223ENST00000583595 BPHLQ86WA6 291 aaPredicted RBP8.43□□□□□ -1.06
SS18-223ENST00000583595 RFC5P40937 340 aa8.42□□□□□ -1.06
SS18-223ENST00000583595 MPNDQ8N594 471 aa8.42□□□□□ -1.06
SS18-223ENST00000583595 MCM6Q14566 821 aa8.41□□□□□ -1.06
SS18-223ENST00000583595 ARID5BQ14865 1188 aa8.41□□□□□ -1.06
SS18-223ENST00000583595 NR6A1Q15406 480 aa8.41□□□□□ -1.06
SS18-223ENST00000583595 GMPR2Q9P2T1 348 aaKnown RBP8.41□□□□□ -1.06
SS18-223ENST00000583595 SH3BP5LQ7L8J4 393 aa8.4□□□□□ -1.06
SS18-223ENST00000583595 POM121Q96HA1 1249 aa8.4□□□□□ -1.06
SS18-223ENST00000583595 CDK15Q96Q40 435 aa8.4□□□□□ -1.06
SS18-223ENST00000583595 ATP13A2Q9NQ11 1180 aa8.4□□□□□ -1.06
SS18-223ENST00000583595 MAGEB6P1A0A0J9YX57 407 aa8.39□□□□□ -1.07
SS18-223ENST00000583595 USP17L8P0C7I0 530 aa8.39□□□□□ -1.07
SS18-223ENST00000583595 SH3RF1Q7Z6J0 888 aa8.39□□□□□ -1.07
SS18-223ENST00000583595 GPKOWQ92917 476 aaPredicted RBP eCLIP8.39□□□□□ -1.07
SS18-223ENST00000583595 FKBPLQ9UIM3 349 aa8.39□□□□□ -1.07
SS18-223ENST00000583595 ADH1CP00326 375 aa8.38□□□□□ -1.07
SS18-223ENST00000583595 NNTQ13423 1086 aa8.38□□□□□ -1.07
SS18-223ENST00000583595 FNBP4Q8N3X1 1017 aaPredicted RBP8.38□□□□□ -1.07
SS18-223ENST00000583595 C1QTNF2Q9BXJ5 285 aa8.38□□□□□ -1.07
SS18-223ENST00000583595 C11orf95C9JLR9 678 aaPredicted RBP8.37□□□□□ -1.07
SS18-223ENST00000583595 CAPN5O15484 640 aaPredicted RBP8.37□□□□□ -1.07
SS18-223ENST00000583595 TMEM259Q4ZIN3 620 aa8.37□□□□□ -1.07
SS18-223ENST00000583595 PROSER2Q86WR7 435 aaPredicted RBP8.37□□□□□ -1.07
SS18-223ENST00000583595 CARD14Q9BXL6 1004 aa8.37□□□□□ -1.07
SS18-223ENST00000583595 HMX1Q9NP08 348 aaPredicted RBP8.37□□□□□ -1.07
SS18-223ENST00000583595 PDXDC2PQ6P474 469 aa8.36□□□□□ -1.07
SS18-223ENST00000583595 EPS8L1Q8TE68 723 aa8.36□□□□□ -1.07
SS18-223ENST00000583595 ZNF775Q96BV0 537 aaPredicted RBP8.36□□□□□ -1.07
SS18-223ENST00000583595 TRAIPQ9BWF2 469 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms