RNA–Protein interactions for RNA: ENST00000582352.1

SHMT1-208, Transcript of serine hydroxymethyltransferase 1, humanhuman

Gene SHMT1, Length 2,756 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-208ENST00000582352 ABCC3O15438 1527 aa15.4■□□□□ 0.06
SHMT1-208ENST00000582352 KIF16BQ96L93 1317 aa15.39■□□□□ 0.05
SHMT1-208ENST00000582352 VGFO15240 615 aaPredicted RBP15.39■□□□□ 0.05
SHMT1-208ENST00000582352 PLEKHF1Q96S99 279 aa15.39■□□□□ 0.05
SHMT1-208ENST00000582352 NUTM2DQ5VT03 806 aaPredicted RBP15.39■□□□□ 0.05
SHMT1-208ENST00000582352 IL16Q14005 1332 aa15.39■□□□□ 0.05
SHMT1-208ENST00000582352 POGZQ7Z3K3 1410 aa15.38■□□□□ 0.05
SHMT1-208ENST00000582352 SAFB2Q14151 953 aaKnown RBP eCLIP15.38■□□□□ 0.05
SHMT1-208ENST00000582352 SMC5Q8IY18 1101 aa15.38■□□□□ 0.05
SHMT1-208ENST00000582352 GZF1Q9H116 711 aaPredicted RBP15.38■□□□□ 0.05
SHMT1-208ENST00000582352 NOB1Q9ULX3 412 aaKnown RBP15.38■□□□□ 0.05
SHMT1-208ENST00000582352 TRIM35Q9UPQ4 493 aa15.38■□□□□ 0.05
SHMT1-208ENST00000582352 COL3A1P02461 1466 aaPredicted RBP15.38■□□□□ 0.05
SHMT1-208ENST00000582352 NEXMIFQ5QGS0 1516 aa15.38■□□□□ 0.05
SHMT1-208ENST00000582352 CFAP74Q9C0B2 1584 aa15.38■□□□□ 0.05
SHMT1-208ENST00000582352 SRPK2P78362 688 aaKnown RBP15.37■□□□□ 0.05
SHMT1-208ENST00000582352 TMEM57Q8N5G2 664 aa15.37■□□□□ 0.05
SHMT1-208ENST00000582352 GGNBP2Q9H3C7 697 aa15.37■□□□□ 0.05
SHMT1-208ENST00000582352 IPO8O15397 1037 aaKnown RBP15.37■□□□□ 0.05
SHMT1-208ENST00000582352 FSD2A1L4K1 749 aa15.36■□□□□ 0.05
SHMT1-208ENST00000582352 ANKRD26Q9UPS8 1709 aa15.36■□□□□ 0.05
SHMT1-208ENST00000582352 PIK3C2BO00750 1634 aa15.36■□□□□ 0.05
SHMT1-208ENST00000582352 MLH3Q9UHC1 1453 aa15.36■□□□□ 0.05
SHMT1-208ENST00000582352 DDX11L8A8MPP1 907 aa15.36■□□□□ 0.05
SHMT1-208ENST00000582352 TRAK2O60296 914 aa15.36■□□□□ 0.05
SHMT1-208ENST00000582352 XRCC6P12956 609 aaKnown RBP eCLIP15.36■□□□□ 0.05
SHMT1-208ENST00000582352 ZBTB40Q9NUA8 1239 aa15.36■□□□□ 0.05
SHMT1-208ENST00000582352 SIGLEC1Q9BZZ2 1709 aa15.35■□□□□ 0.05
SHMT1-208ENST00000582352 RIPK4P57078 832 aa15.35■□□□□ 0.05
SHMT1-208ENST00000582352 RRAGDQ9NQL2 400 aaPredicted RBP15.35■□□□□ 0.05
SHMT1-208ENST00000582352 PNNQ9H307 717 aaKnown RBP15.34■□□□□ 0.05
SHMT1-208ENST00000582352 TERF2IPQ9NYB0 399 aa15.34■□□□□ 0.05
SHMT1-208ENST00000582352 ATAD2Q6PL18 1390 aa15.34■□□□□ 0.05
SHMT1-208ENST00000582352 NUCB1Q02818 461 aa15.33■□□□□ 0.04
SHMT1-208ENST00000582352 STK26Q9P289 416 aa15.33■□□□□ 0.04
SHMT1-208ENST00000582352 MED14O60244 1454 aa15.33■□□□□ 0.04
SHMT1-208ENST00000582352 NCOA3Q9Y6Q9 1424 aa15.33■□□□□ 0.04
SHMT1-208ENST00000582352 RBM25P49756 843 aaKnown RBP15.32■□□□□ 0.04
SHMT1-208ENST00000582352 LNPKQ9C0E8 428 aa15.32■□□□□ 0.04
SHMT1-208ENST00000582352 DIAPH1O60610 1272 aaKnown RBP15.32■□□□□ 0.04
SHMT1-208ENST00000582352 ALDH1L2Q3SY69 923 aa15.32■□□□□ 0.04
SHMT1-208ENST00000582352 PANK2Q9BZ23 570 aa15.31■□□□□ 0.04
SHMT1-208ENST00000582352 MRE11P49959 708 aa15.31■□□□□ 0.04
SHMT1-208ENST00000582352 CHD1LQ86WJ1 897 aa15.31■□□□□ 0.04
SHMT1-208ENST00000582352 FYB1O15117 783 aa15.3■□□□□ 0.04
SHMT1-208ENST00000582352 SNX21Q969T3 373 aa15.3■□□□□ 0.04
SHMT1-208ENST00000582352 ZNF692Q9BU19 519 aaPredicted RBP15.3■□□□□ 0.04
SHMT1-208ENST00000582352 LRRC7Q96NW7 1537 aa15.3■□□□□ 0.04
SHMT1-208ENST00000582352 HSP90AB1P08238 724 aaKnown RBP15.3■□□□□ 0.04
SHMT1-208ENST00000582352 ZFYVE9O95405 1425 aa15.29■□□□□ 0.04
SHMT1-208ENST00000582352 MINK1Q8N4C8 1332 aaPredicted RBP15.29■□□□□ 0.04
SHMT1-208ENST00000582352 CLTCQ00610 1675 aaKnown RBP15.29■□□□□ 0.04
SHMT1-208ENST00000582352 BMP2KLQ5H9B9 411 aa15.29■□□□□ 0.04
SHMT1-208ENST00000582352 PTPRMP28827 1452 aa15.28■□□□□ 0.04
SHMT1-208ENST00000582352 KIF20BQ96Q89 1820 aa15.28■□□□□ 0.04
SHMT1-208ENST00000582352 HDGFL2Q7Z4V5 671 aaPredicted RBP15.28■□□□□ 0.04
SHMT1-208ENST00000582352 SENP3Q9H4L4 574 aaPredicted RBP15.28■□□□□ 0.04
SHMT1-208ENST00000582352 ISY1Q9ULR0 285 aaKnown RBP15.28■□□□□ 0.04
SHMT1-208ENST00000582352 CD163L1Q9NR16 1453 aa15.28■□□□□ 0.04
SHMT1-208ENST00000582352 ZNF428Q96B54 188 aa15.28■□□□□ 0.04
SHMT1-208ENST00000582352 CHMP4BQ9H444 224 aaKnown RBP15.28■□□□□ 0.04
SHMT1-208ENST00000582352 CIZ1Q9ULV3 898 aaPredicted RBP15.28■□□□□ 0.04
SHMT1-208ENST00000582352 NPM1P06748 294 aaKnown RBP eCLIP15.27■□□□□ 0.04
SHMT1-208ENST00000582352 DDIT3P35638 169 aa15.27■□□□□ 0.04
SHMT1-208ENST00000582352 GBP4Q96PP9 640 aa15.27■□□□□ 0.04
SHMT1-208ENST00000582352 CDC42BPGQ6DT37 1551 aa15.27■□□□□ 0.04
SHMT1-208ENST00000582352 PNPLA6Q8IY17 1366 aa15.27■□□□□ 0.03
SHMT1-208ENST00000582352 HSP90AA1P07900 732 aaKnown RBP15.27■□□□□ 0.03
SHMT1-208ENST00000582352 PRAM1Q96QH2 718 aa15.26■□□□□ 0.03
SHMT1-208ENST00000582352 GRPEL1Q9HAV7 217 aa15.26■□□□□ 0.03
SHMT1-208ENST00000582352 FCHSD2O94868 740 aa15.26■□□□□ 0.03
SHMT1-208ENST00000582352 GCC1Q96CN9 775 aa15.26■□□□□ 0.03
SHMT1-208ENST00000582352 IDI1Q13907 227 aa15.25■□□□□ 0.03
SHMT1-208ENST00000582352 ANKRD45Q5TZF3 282 aa15.25■□□□□ 0.03
SHMT1-208ENST00000582352 TNPO1Q92973 898 aaKnown RBP15.25■□□□□ 0.03
SHMT1-208ENST00000582352 ARHGAP31Q2M1Z3 1444 aa15.25■□□□□ 0.03
SHMT1-208ENST00000582352 MYO5BQ9ULV0 1848 aa15.25■□□□□ 0.03
SHMT1-208ENST00000582352 PRKAR2BP31323 418 aa15.25■□□□□ 0.03
SHMT1-208ENST00000582352 FAM135BQ49AJ0 1406 aa15.25■□□□□ 0.03
SHMT1-208ENST00000582352 PPIP5K1Q6PFW1 1433 aa15.25■□□□□ 0.03
SHMT1-208ENST00000582352 BRPF1P55201 1214 aaPredicted RBP15.24■□□□□ 0.03
SHMT1-208ENST00000582352 CLCN1P35523 988 aa15.24■□□□□ 0.03
SHMT1-208ENST00000582352 SLC52A1Q9NWF4 448 aa15.24■□□□□ 0.03
SHMT1-208ENST00000582352 YTHDC2Q9H6S0 1430 aaKnown RBP15.24■□□□□ 0.03
SHMT1-208ENST00000582352 PTMSP20962 102 aa15.24■□□□□ 0.03
SHMT1-208ENST00000582352 CALD1Q05682 793 aaKnown RBP15.23■□□□□ 0.03
SHMT1-208ENST00000582352 PTCH1Q13635 1447 aa15.23■□□□□ 0.03
SHMT1-208ENST00000582352 DIP2CQ9Y2E4 1556 aa15.23■□□□□ 0.03
SHMT1-208ENST00000582352 RAB3GAP1Q15042 981 aa15.23■□□□□ 0.03
SHMT1-208ENST00000582352 UBE2Q2Q8WVN8 375 aa15.23■□□□□ 0.03
SHMT1-208ENST00000582352 C1orf115Q9H7X2 142 aa15.23■□□□□ 0.03
SHMT1-208ENST00000582352 ZBTB7BO15156 539 aaPredicted RBP15.22■□□□□ 0.03
SHMT1-208ENST00000582352 SKOR2Q2VWA4 1001 aaPredicted RBP15.22■□□□□ 0.03
SHMT1-208ENST00000582352 NAP1L5Q96NT1 182 aaPredicted RBP15.22■□□□□ 0.03
SHMT1-208ENST00000582352 REREQ9P2R6 1566 aa15.22■□□□□ 0.03
SHMT1-208ENST00000582352 PIK3R4Q99570 1358 aa15.21■□□□□ 0.03
SHMT1-208ENST00000582352 TBC1D9Q6ZT07 1266 aa15.21■□□□□ 0.03
SHMT1-208ENST00000582352 ARHGAP45Q92619 1136 aa15.21■□□□□ 0.03
SHMT1-208ENST00000582352 K7ELQ4 463 aaPredicted RBP15.21■□□□□ 0.03
SHMT1-208ENST00000582352 TMEM131LA2VDJ0 1609 aa15.21■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms