RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 ANKRD36BQ8N2N9 1353 aa21.49■■□□□ 1.03
SS18-216ENST00000580751 A0A1W2PP64 1363 aa21.48■■□□□ 1.03
SS18-216ENST00000580751 PNPLA6Q8IY17 1366 aa21.48■■□□□ 1.03
SS18-216ENST00000580751 C11orf95C9JLR9 678 aaPredicted RBP21.48■■□□□ 1.03
SS18-216ENST00000580751 KIF7Q2M1P5 1343 aa21.48■■□□□ 1.03
SS18-216ENST00000580751 NRKQ7Z2Y5 1582 aa21.48■■□□□ 1.03
SS18-216ENST00000580751 COL22A1Q8NFW1 1626 aaPredicted RBP21.47■■□□□ 1.03
SS18-216ENST00000580751 ALS2Q96Q42 1657 aa21.47■■□□□ 1.03
SS18-216ENST00000580751 PAK3O75914 559 aaPredicted RBP21.47■■□□□ 1.03
SS18-216ENST00000580751 SSH2Q76I76 1423 aa21.46■■□□□ 1.03
SS18-216ENST00000580751 SPATA31A6Q5VVP1 1343 aa21.46■■□□□ 1.03
SS18-216ENST00000580751 EDC4Q6P2E9 1401 aaKnown RBP21.46■■□□□ 1.03
SS18-216ENST00000580751 CCDC7Q96M83 1385 aa21.45■■□□□ 1.02
SS18-216ENST00000580751 LMOD2Q6P5Q4 547 aa21.44■■□□□ 1.02
SS18-216ENST00000580751 TTC21AQ8NDW8 1320 aa21.43■■□□□ 1.02
SS18-216ENST00000580751 MED1Q15648 1581 aaPredicted RBP21.42■■□□□ 1.02
SS18-216ENST00000580751 WASHC2AQ641Q2 1341 aa21.42■■□□□ 1.02
SS18-216ENST00000580751 TTC21BQ7Z4L5 1316 aa21.42■■□□□ 1.02
SS18-216ENST00000580751 ABTB2Q8N961 1025 aa21.4■■□□□ 1.02
SS18-216ENST00000580751 PIK3C2AO00443 1686 aa21.39■■□□□ 1.01
SS18-216ENST00000580751 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.37■■□□□ 1.01
SS18-216ENST00000580751 ABCA3Q99758 1704 aa21.37■■□□□ 1.01
SS18-216ENST00000580751 NLRP13Q86W25 1043 aa21.36■■□□□ 1.01
SS18-216ENST00000580751 NSD3Q9BZ95 1437 aa21.36■■□□□ 1.01
SS18-216ENST00000580751 CRYBG1Q9Y4K1 1723 aa21.35■■□□□ 1.01
SS18-216ENST00000580751 HAP1P54257 671 aaPredicted RBP21.35■■□□□ 1.01
SS18-216ENST00000580751 LRP6O75581 1613 aa21.35■■□□□ 1.01
SS18-216ENST00000580751 NUTM2BA6NNL0 878 aaPredicted RBP21.34■■□□□ 1.01
SS18-216ENST00000580751 NUTM2EB1AL46 878 aaPredicted RBP21.34■■□□□ 1.01
SS18-216ENST00000580751 NLRP6P59044 892 aa21.34■■□□□ 1.01
SS18-216ENST00000580751 NUTM2GQ5VZR2 741 aa21.34■■□□□ 1.01
SS18-216ENST00000580751 NUTM2AQ8IVF1 878 aaPredicted RBP21.34■■□□□ 1.01
SS18-216ENST00000580751 PANK3Q9H999 370 aa21.34■■□□□ 1.01
SS18-216ENST00000580751 USP54Q70EL1 1684 aa21.34■■□□□ 1.01
SS18-216ENST00000580751 PHRF1Q9P1Y6 1649 aaKnown RBP21.33■■□□□ 1.01
SS18-216ENST00000580751 USP19O94966 1318 aa21.33■■□□□ 1.01
SS18-216ENST00000580751 CARD14Q9BXL6 1004 aa21.33■■□□□ 1.01
SS18-216ENST00000580751 USP31Q70CQ4 1352 aa21.33■■□□□ 1
SS18-216ENST00000580751 NME9Q86XW9 330 aa21.32■■□□□ 1
SS18-216ENST00000580751 CABLES1Q8TDN4 633 aa21.32■■□□□ 1
SS18-216ENST00000580751 SLIT3O75094 1523 aa21.31■■□□□ 1
SS18-216ENST00000580751 PLEKHG5O94827 1062 aa21.31■■□□□ 1
SS18-216ENST00000580751 KIF20BQ96Q89 1820 aa21.31■■□□□ 1
SS18-216ENST00000580751 CGNL1Q0VF96 1302 aa21.3■■□□□ 1
SS18-216ENST00000580751 MEX3CQ5U5Q3 659 aaKnown RBP21.3■■□□□ 1
SS18-216ENST00000580751 OVOS2A0A0J9YW53 1432 aa21.29■■□□□ 1
SS18-216ENST00000580751 OVOS2Q6IE36 1432 aa21.29■■□□□ 1
SS18-216ENST00000580751 MARF1Q9Y4F3 1742 aaKnown RBP21.29■■□□□ 1
SS18-216ENST00000580751 ADAMTS2O95450 1211 aa21.28■■□□□ 1
SS18-216ENST00000580751 KCNH5Q8NCM2 988 aa21.27■■□□□ 1
SS18-216ENST00000580751 COG3Q96JB2 828 aa21.27■■□□□ 1
SS18-216ENST00000580751 KNSTRNQ9Y448 316 aa21.27■■□□□ 1
SS18-216ENST00000580751 FYB1O15117 783 aa21.26■□□□□ 0.99
SS18-216ENST00000580751 NSD2O96028 1365 aa21.25■□□□□ 0.99
SS18-216ENST00000580751 GCP02774 474 aa21.25■□□□□ 0.99
SS18-216ENST00000580751 ZRANB1Q9UGI0 708 aa21.25■□□□□ 0.99
SS18-216ENST00000580751 GGNBP2Q9H3C7 697 aa21.24■□□□□ 0.99
SS18-216ENST00000580751 CPDO75976 1380 aa21.23■□□□□ 0.99
SS18-216ENST00000580751 C8orf37Q96NL8 207 aa21.23■□□□□ 0.99
SS18-216ENST00000580751 NFAT5O94916 1531 aa21.23■□□□□ 0.99
SS18-216ENST00000580751 ANKRD26Q9UPS8 1709 aa21.22■□□□□ 0.99
SS18-216ENST00000580751 KIAA0232Q92628 1395 aa21.22■□□□□ 0.99
SS18-216ENST00000580751 PRDM11Q9NQV5 511 aa21.21■□□□□ 0.99
SS18-216ENST00000580751 COL14A1Q05707 1796 aaKnown RBP21.2■□□□□ 0.99
SS18-216ENST00000580751 PER1O15534 1290 aaPredicted RBP21.2■□□□□ 0.98
SS18-216ENST00000580751 ZC3H6P61129 1189 aaKnown RBP21.2■□□□□ 0.98
SS18-216ENST00000580751 NGLY1Q96IV0 654 aa21.2■□□□□ 0.98
SS18-216ENST00000580751 PHF23Q9BUL5 403 aaPredicted RBP21.2■□□□□ 0.98
SS18-216ENST00000580751 SOX12O15370 315 aa21.19■□□□□ 0.98
SS18-216ENST00000580751 DIEXFQ68CQ4 756 aaKnown RBP21.19■□□□□ 0.98
SS18-216ENST00000580751 PLCH1Q4KWH8 1693 aa21.18■□□□□ 0.98
SS18-216ENST00000580751 AMER1Q5JTC6 1135 aaPredicted RBP21.18■□□□□ 0.98
SS18-216ENST00000580751 NPC1L1Q9UHC9 1359 aa21.18■□□□□ 0.98
SS18-216ENST00000580751 AFF2P51816 1311 aa21.17■□□□□ 0.98
SS18-216ENST00000580751 SLIT2O94813 1529 aa21.17■□□□□ 0.98
SS18-216ENST00000580751 NWD2Q9ULI1 1742 aa21.17■□□□□ 0.98
SS18-216ENST00000580751 ABCC6O95255 1503 aa21.16■□□□□ 0.98
SS18-216ENST00000580751 FAM83GA6ND36 823 aa21.16■□□□□ 0.98
SS18-216ENST00000580751 FNBP4Q8N3X1 1017 aaPredicted RBP21.16■□□□□ 0.98
SS18-216ENST00000580751 AATKQ6ZMQ8 1374 aa21.15■□□□□ 0.98
SS18-216ENST00000580751 ARHGEF25Q86VW2 580 aa21.15■□□□□ 0.98
SS18-216ENST00000580751 DDX10Q13206 875 aaKnown RBP21.14■□□□□ 0.97
SS18-216ENST00000580751 ZNF772Q68DY9 489 aaPredicted RBP21.14■□□□□ 0.97
SS18-216ENST00000580751 LTN1O94822 1766 aa21.14■□□□□ 0.97
SS18-216ENST00000580751 LMO7Q8WWI1 1683 aa21.14■□□□□ 0.97
SS18-216ENST00000580751 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.13■□□□□ 0.97
SS18-216ENST00000580751 ZBTB7CA1YPR0 619 aa21.13■□□□□ 0.97
SS18-216ENST00000580751 CHRNA2Q15822 529 aa21.13■□□□□ 0.97
SS18-216ENST00000580751 MORC1Q86VD1 984 aa21.12■□□□□ 0.97
SS18-216ENST00000580751 BTG4Q9NY30 223 aa21.12■□□□□ 0.97
SS18-216ENST00000580751 USP21Q9UK80 565 aa21.12■□□□□ 0.97
SS18-216ENST00000580751 BCL9LQ86UU0 1499 aa21.12■□□□□ 0.97
SS18-216ENST00000580751 RTL1A6NKG5 1358 aa21.1■□□□□ 0.97
SS18-216ENST00000580751 COL18A1P39060 1754 aa21.1■□□□□ 0.97
SS18-216ENST00000580751 MAP3K19Q56UN5 1328 aa21.1■□□□□ 0.97
SS18-216ENST00000580751 NRAPQ86VF7 1730 aa21.1■□□□□ 0.97
SS18-216ENST00000580751 CC2D1BQ5T0F9 858 aaKnown RBP21.1■□□□□ 0.97
SS18-216ENST00000580751 UNC5CLQ8IV45 518 aa21.1■□□□□ 0.97
SS18-216ENST00000580751 KIF24Q5T7B8 1368 aa21.1■□□□□ 0.97
SS18-216ENST00000580751 CAMTA1Q9Y6Y1 1673 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms