RNA–Protein interactions for RNA: ENST00000579716.2

COPS3-216, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 419 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-216ENST00000579716 VEGFBP49765 207 aa10.12□□□□□ -0.79
COPS3-216ENST00000579716 PTPRNQ16849 979 aa10.11□□□□□ -0.79
COPS3-216ENST00000579716 LINC01559Q495D7 138 aa10.11□□□□□ -0.79
COPS3-216ENST00000579716 KLF16Q9BXK1 252 aaPredicted RBP10.11□□□□□ -0.79
COPS3-216ENST00000579716 TLL2Q9Y6L7 1015 aa10.11□□□□□ -0.79
COPS3-216ENST00000579716 ERBB4Q15303 1308 aa10.1□□□□□ -0.79
COPS3-216ENST00000579716 UBTFP17480 764 aaKnown RBP10.1□□□□□ -0.79
COPS3-216ENST00000579716 KCNH2Q12809 1159 aa10.1□□□□□ -0.79
COPS3-216ENST00000579716 PRR7Q8TB68 274 aa10.1□□□□□ -0.79
COPS3-216ENST00000579716 ZFP42Q96MM3 310 aa10.1□□□□□ -0.79
COPS3-216ENST00000579716 SHROOM4Q9ULL8 1493 aa10.1□□□□□ -0.79
COPS3-216ENST00000579716 LOC105371045A0A1W2PR82 267 aa10.09□□□□□ -0.79
COPS3-216ENST00000579716 CDK11BP21127 795 aaKnown RBP10.08□□□□□ -0.8
COPS3-216ENST00000579716 BARGINQ6ZT62 677 aa10.08□□□□□ -0.8
COPS3-216ENST00000579716 PCDHB15Q9Y5E8 787 aa10.08□□□□□ -0.8
COPS3-216ENST00000579716 WASF2Q9Y6W5 498 aa10.08□□□□□ -0.8
COPS3-216ENST00000579716 H3BM21 787 aa10.07□□□□□ -0.8
COPS3-216ENST00000579716 ZMYND10O75800 440 aa10.07□□□□□ -0.8
COPS3-216ENST00000579716 MPNDQ8N594 471 aa10.07□□□□□ -0.8
COPS3-216ENST00000579716 ZNF511Q8NB15 262 aa10.07□□□□□ -0.8
COPS3-216ENST00000579716 AMHR2Q16671 573 aa10.06□□□□□ -0.8
COPS3-216ENST00000579716 DESI1Q6ICB0 168 aa10.06□□□□□ -0.8
COPS3-216ENST00000579716 PDIA4P13667 645 aaKnown RBP10.05□□□□□ -0.8
COPS3-216ENST00000579716 NPAS3Q8IXF0 933 aa10.05□□□□□ -0.8
COPS3-216ENST00000579716 TIMP2P16035 220 aa10.04□□□□□ -0.8
COPS3-216ENST00000579716 LYPD8Q6UX82 237 aa10.04□□□□□ -0.8
COPS3-216ENST00000579716 KRI1Q8N9T8 703 aaKnown RBP10.04□□□□□ -0.8
COPS3-216ENST00000579716 CFAP99D6REC4 459 aa10.03□□□□□ -0.8
COPS3-216ENST00000579716 VARSP26640 1264 aaKnown RBP10.03□□□□□ -0.8
COPS3-216ENST00000579716 NNTQ13423 1086 aa10.03□□□□□ -0.8
COPS3-216ENST00000579716 MTMR2Q13614 643 aa10.03□□□□□ -0.8
COPS3-216ENST00000579716 GIGYF2Q6Y7W6 1299 aaKnown RBP10.03□□□□□ -0.8
COPS3-216ENST00000579716 BCL11AQ9H165 835 aa10.03□□□□□ -0.8
COPS3-216ENST00000579716 SOBPA7XYQ1 873 aa10.02□□□□□ -0.81
COPS3-216ENST00000579716 C4orf48Q5BLP8 95 aa10.02□□□□□ -0.81
COPS3-216ENST00000579716 SLC16A10Q8TF71 515 aa10.02□□□□□ -0.81
COPS3-216ENST00000579716 BEGAINQ9BUH8 593 aa10.02□□□□□ -0.81
COPS3-216ENST00000579716 RSBN1LQ6PCB5 846 aaPredicted RBP10.01□□□□□ -0.81
COPS3-216ENST00000579716 ZC3H15Q8WU90 426 aaKnown RBP10.01□□□□□ -0.81
COPS3-216ENST00000579716 FOXJ1Q92949 421 aa10.01□□□□□ -0.81
COPS3-216ENST00000579716 TBC1D2Q9BYX2 928 aa10.01□□□□□ -0.81
COPS3-216ENST00000579716 F12P00748 615 aaPredicted RBP10□□□□□ -0.81
COPS3-216ENST00000579716 MRPL14Q6P1L8 145 aaKnown RBP10□□□□□ -0.81
COPS3-216ENST00000579716 IRF7Q92985 503 aa10□□□□□ -0.81
COPS3-216ENST00000579716 CDK15Q96Q40 435 aa10□□□□□ -0.81
COPS3-216ENST00000579716 CCDC9Q9Y3X0 531 aaKnown RBP10□□□□□ -0.81
COPS3-216ENST00000579716 GJA5P36382 358 aa9.99□□□□□ -0.81
COPS3-216ENST00000579716 GRM5P41594 1212 aa9.99□□□□□ -0.81
COPS3-216ENST00000579716 ZSCAN1Q8NBB4 408 aa9.99□□□□□ -0.81
COPS3-216ENST00000579716 PURBQ96QR8 312 aaKnown RBP9.99□□□□□ -0.81
COPS3-216ENST00000579716 MAP10Q9P2G4 905 aa9.99□□□□□ -0.81
COPS3-216ENST00000579716 SPDYE5A6NIY4 337 aa9.98□□□□□ -0.81
COPS3-216ENST00000579716 SPTLC1O15269 473 aa9.98□□□□□ -0.81
COPS3-216ENST00000579716 PER1O15534 1290 aaPredicted RBP9.98□□□□□ -0.81
COPS3-216ENST00000579716 TTLL12Q14166 644 aaPredicted RBP9.98□□□□□ -0.81
COPS3-216ENST00000579716 NR3C2P08235 984 aa9.97□□□□□ -0.81
COPS3-216ENST00000579716 HSP90B1P14625 803 aaKnown RBP9.97□□□□□ -0.81
COPS3-216ENST00000579716 WDR4P57081 412 aaKnown RBP9.97□□□□□ -0.81
COPS3-216ENST00000579716 PARP9Q8IXQ6 854 aa9.97□□□□□ -0.81
COPS3-216ENST00000579716 ZFAND3Q9H8U3 227 aa9.97□□□□□ -0.81
COPS3-216ENST00000579716 PLEKHG3A1L390 1219 aa9.95□□□□□ -0.82
COPS3-216ENST00000579716 ADH1CP00326 375 aa9.95□□□□□ -0.82
COPS3-216ENST00000579716 CABLES1Q8TDN4 633 aa9.95□□□□□ -0.82
COPS3-216ENST00000579716 UBE2Q2Q8WVN8 375 aa9.95□□□□□ -0.82
COPS3-216ENST00000579716 ITPKCQ96DU7 683 aa9.95□□□□□ -0.82
COPS3-216ENST00000579716 VSIG8P0DPA2 414 aa9.94□□□□□ -0.82
COPS3-216ENST00000579716 TRIM66O15016 1216 aa9.93□□□□□ -0.82
COPS3-216ENST00000579716 CTHP32929 405 aa9.93□□□□□ -0.82
COPS3-216ENST00000579716 CHMP4AQ9BY43 222 aa9.92□□□□□ -0.82
COPS3-216ENST00000579716 BRD2P25440 801 aaKnown RBP9.91□□□□□ -0.82
COPS3-216ENST00000579716 RIC3Q7Z5B4 369 aa9.91□□□□□ -0.82
COPS3-216ENST00000579716 FAM174AQ8TBP5 190 aa9.91□□□□□ -0.82
COPS3-216ENST00000579716 ZIC2O95409 532 aaPredicted RBP9.9□□□□□ -0.82
COPS3-216ENST00000579716 QPCTQ16769 361 aa9.9□□□□□ -0.82
COPS3-216ENST00000579716 LIMD1Q9UGP4 676 aa9.9□□□□□ -0.82
COPS3-216ENST00000579716 GSK3AP49840 483 aa9.89□□□□□ -0.83
COPS3-216ENST00000579716 SCARF1Q14162 830 aa9.88□□□□□ -0.83
COPS3-216ENST00000579716 ARID5BQ14865 1188 aa9.88□□□□□ -0.83
COPS3-216ENST00000579716 PRPF38BQ5VTL8 546 aaKnown RBP9.88□□□□□ -0.83
COPS3-216ENST00000579716 SH3RF1Q7Z6J0 888 aa9.88□□□□□ -0.83
COPS3-216ENST00000579716 C1QTNF2Q9BXJ5 285 aa9.88□□□□□ -0.83
COPS3-216ENST00000579716 ZBTB3Q9H5J0 574 aa9.88□□□□□ -0.83
COPS3-216ENST00000579716 NR5A1Q13285 461 aa9.87□□□□□ -0.83
COPS3-216ENST00000579716 LOC100996750A0A140TA64 210 aa9.86□□□□□ -0.83
COPS3-216ENST00000579716 PPFIA3O75145 1194 aa9.86□□□□□ -0.83
COPS3-216ENST00000579716 C6orf118Q5T5N4 469 aa9.86□□□□□ -0.83
COPS3-216ENST00000579716 KRTAP4-6Q9BYQ5 205 aa9.86□□□□□ -0.83
COPS3-216ENST00000579716 ZBTB7CA1YPR0 619 aa9.85□□□□□ -0.83
COPS3-216ENST00000579716 LILRB3O75022 631 aa9.85□□□□□ -0.83
COPS3-216ENST00000579716 CSPP1Q1MSJ5 1256 aa9.85□□□□□ -0.83
COPS3-216ENST00000579716 MYSM1Q5VVJ2 828 aa9.85□□□□□ -0.83
COPS3-216ENST00000579716 GPR161Q8N6U8 529 aaKnown RBP9.85□□□□□ -0.83
COPS3-216ENST00000579716 SOS2Q07890 1332 aaPredicted RBP9.84□□□□□ -0.83
COPS3-216ENST00000579716 FAM181BA6NEQ2 426 aa9.84□□□□□ -0.83
COPS3-216ENST00000579716 RTL5Q5HYW3 569 aaPredicted RBP9.84□□□□□ -0.83
COPS3-216ENST00000579716 MEIOBQ8N635 442 aa9.84□□□□□ -0.83
COPS3-216ENST00000579716 DNMT3LQ9UJW3 386 aa9.84□□□□□ -0.83
COPS3-216ENST00000579716 KRT76Q01546 638 aa9.83□□□□□ -0.84
COPS3-216ENST00000579716 DIXDC1Q155Q3 683 aa9.83□□□□□ -0.84
COPS3-216ENST00000579716 SH3BP5LQ7L8J4 393 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms