RNA–Protein interactions for RNA: ENST00000578314.1

VAPA-205, Transcript of VAMP associated protein A, humanhuman

TSL 3

Gene VAPA, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-205ENST00000578314 ABCA3Q99758 1704 aa32.77■■■□□ 2.84
VAPA-205ENST00000578314 ALS2Q96Q42 1657 aa32.77■■■□□ 2.84
VAPA-205ENST00000578314 EVC2Q86UK5 1308 aa32.76■■■□□ 2.83
VAPA-205ENST00000578314 TOPAZ1Q8N9V7 1692 aa32.75■■■□□ 2.83
VAPA-205ENST00000578314 FAM83GA6ND36 823 aa32.75■■■□□ 2.83
VAPA-205ENST00000578314 GJD4Q96KN9 370 aaPredicted RBP32.75■■■□□ 2.83
VAPA-205ENST00000578314 QRICH2Q9H0J4 1663 aa32.75■■■□□ 2.83
VAPA-205ENST00000578314 ATAD2Q6PL18 1390 aa32.73■■■□□ 2.83
VAPA-205ENST00000578314 PPIP5K1Q6PFW1 1433 aa32.73■■■□□ 2.83
VAPA-205ENST00000578314 CARD11Q9BXL7 1154 aa32.72■■■□□ 2.83
VAPA-205ENST00000578314 CABP1Q9NZU7 370 aa32.7■■■□□ 2.83
VAPA-205ENST00000578314 RALGAPBQ86X10 1494 aa32.68■■■□□ 2.82
VAPA-205ENST00000578314 GLI3P10071 1580 aa32.68■■■□□ 2.82
VAPA-205ENST00000578314 PLCH1Q4KWH8 1693 aa32.68■■■□□ 2.82
VAPA-205ENST00000578314 VPS72Q15906 364 aa32.67■■■□□ 2.82
VAPA-205ENST00000578314 NWD2Q9ULI1 1742 aa32.67■■■□□ 2.82
VAPA-205ENST00000578314 BRD4O60885 1362 aaPredicted RBP32.65■■■□□ 2.82
VAPA-205ENST00000578314 SBNO2Q9Y2G9 1366 aa32.64■■■□□ 2.82
VAPA-205ENST00000578314 ABTB2Q8N961 1025 aa32.63■■■□□ 2.81
VAPA-205ENST00000578314 NUTM2GQ5VZR2 741 aa32.62■■■□□ 2.81
VAPA-205ENST00000578314 EP400Q96L91 3159 aa32.62■■■□□ 2.81
VAPA-205ENST00000578314 BTG4Q9NY30 223 aa32.6■■■□□ 2.81
VAPA-205ENST00000578314 CRYBG1Q9Y4K1 1723 aa32.58■■■□□ 2.81
VAPA-205ENST00000578314 PRDM11Q9NQV5 511 aa32.58■■■□□ 2.81
VAPA-205ENST00000578314 USP6P35125 1406 aa32.57■■■□□ 2.8
VAPA-205ENST00000578314 ONECUT3O60422 494 aaPredicted RBP32.56■■■□□ 2.8
VAPA-205ENST00000578314 NLRP13Q86W25 1043 aa32.56■■■□□ 2.8
VAPA-205ENST00000578314 ZNF692Q9BU19 519 aaPredicted RBP32.56■■■□□ 2.8
VAPA-205ENST00000578314 USP19O94966 1318 aa32.55■■■□□ 2.8
VAPA-205ENST00000578314 PCGF6Q9BYE7 350 aa32.55■■■□□ 2.8
VAPA-205ENST00000578314 KIAA0232Q92628 1395 aa32.55■■■□□ 2.8
VAPA-205ENST00000578314 CLSPNQ9HAW4 1339 aa32.54■■■□□ 2.8
VAPA-205ENST00000578314 SSH2Q76I76 1423 aa32.54■■■□□ 2.8
VAPA-205ENST00000578314 CCDC9Q9Y3X0 531 aaKnown RBP32.54■■■□□ 2.8
VAPA-205ENST00000578314 COL14A1Q05707 1796 aaKnown RBP32.54■■■□□ 2.8
VAPA-205ENST00000578314 NRAPQ86VF7 1730 aa32.54■■■□□ 2.8
VAPA-205ENST00000578314 ZC3H6P61129 1189 aaKnown RBP32.52■■■□□ 2.8
VAPA-205ENST00000578314 TIMELESSQ9UNS1 1208 aa32.51■■■□□ 2.79
VAPA-205ENST00000578314 BRWD3Q6RI45 1802 aa32.51■■■□□ 2.79
VAPA-205ENST00000578314 GCP02774 474 aa32.49■■■□□ 2.79
VAPA-205ENST00000578314 CHRNA2Q15822 529 aa32.49■■■□□ 2.79
VAPA-205ENST00000578314 CCDC125Q86Z20 511 aa32.49■■■□□ 2.79
VAPA-205ENST00000578314 SEPT12Q8IYM1 358 aa32.49■■■□□ 2.79
VAPA-205ENST00000578314 CPDO75976 1380 aa32.48■■■□□ 2.79
VAPA-205ENST00000578314 PUS7Q96PZ0 661 aaKnown RBP32.48■■■□□ 2.79
VAPA-205ENST00000578314 PHRF1Q9P1Y6 1649 aaKnown RBP32.48■■■□□ 2.79
VAPA-205ENST00000578314 NLRP6P59044 892 aa32.47■■■□□ 2.79
VAPA-205ENST00000578314 CPSF1Q10570 1443 aaKnown RBP32.47■■■□□ 2.79
VAPA-205ENST00000578314 SPATA31A5Q5VU36 1347 aa32.46■■■□□ 2.79
VAPA-205ENST00000578314 TTC21BQ7Z4L5 1316 aa32.46■■■□□ 2.79
VAPA-205ENST00000578314 SPATA31A7Q8IWB4 1347 aa32.46■■■□□ 2.79
VAPA-205ENST00000578314 ST20-MTHFSA0A0A6YYL1 179 aa32.45■■■□□ 2.79
VAPA-205ENST00000578314 TESK2Q96S53 571 aa32.45■■■□□ 2.79
VAPA-205ENST00000578314 SLC24A1O60721 1099 aa32.43■■■□□ 2.78
VAPA-205ENST00000578314 NRKQ7Z2Y5 1582 aa32.42■■■□□ 2.78
VAPA-205ENST00000578314 TTC21AQ8NDW8 1320 aa32.42■■■□□ 2.78
VAPA-205ENST00000578314 KTN1Q86UP2 1357 aaKnown RBP32.41■■■□□ 2.78
VAPA-205ENST00000578314 FAM98CQ17RN3 349 aaKnown RBP32.4■■■□□ 2.78
VAPA-205ENST00000578314 BLMP54132 1417 aaPredicted RBP32.39■■■□□ 2.78
VAPA-205ENST00000578314 SLC12A5Q9H2X9 1139 aa32.38■■■□□ 2.77
VAPA-205ENST00000578314 SPATA31A1Q5TZJ5 1347 aa32.37■■■□□ 2.77
VAPA-205ENST00000578314 KRT27Q7Z3Y8 459 aa32.37■■■□□ 2.77
VAPA-205ENST00000578314 TMC1Q8TDI8 760 aa32.37■■■□□ 2.77
VAPA-205ENST00000578314 STRN4Q9NRL3 753 aa32.37■■■□□ 2.77
VAPA-205ENST00000578314 SLIT3O75094 1523 aa32.36■■■□□ 2.77
VAPA-205ENST00000578314 EVA1CP58658 441 aa32.36■■■□□ 2.77
VAPA-205ENST00000578314 CD163L1Q9NR16 1453 aa32.35■■■□□ 2.77
VAPA-205ENST00000578314 A0A0G2JS52 829 aa32.35■■■□□ 2.77
VAPA-205ENST00000578314 MYT1Q01538 1121 aa32.35■■■□□ 2.77
VAPA-205ENST00000578314 CAMTA1Q9Y6Y1 1673 aa32.34■■■□□ 2.77
VAPA-205ENST00000578314 AKAP12Q02952 1782 aa32.34■■■□□ 2.77
VAPA-205ENST00000578314 PIK3C2AO00443 1686 aa32.34■■■□□ 2.77
VAPA-205ENST00000578314 HDGFL2Q7Z4V5 671 aaPredicted RBP32.32■■■□□ 2.76
VAPA-205ENST00000578314 KCNH5Q8NCM2 988 aa32.32■■■□□ 2.76
VAPA-205ENST00000578314 USP47Q96K76 1375 aa32.32■■■□□ 2.76
VAPA-205ENST00000578314 TERF2IPQ9NYB0 399 aa32.31■■■□□ 2.76
VAPA-205ENST00000578314 AATKQ6ZMQ8 1374 aa32.31■■■□□ 2.76
VAPA-205ENST00000578314 LMO7Q8WWI1 1683 aa32.3■■■□□ 2.76
VAPA-205ENST00000578314 LARP1Q6PKG0 1096 aaKnown RBP32.29■■■□□ 2.76
VAPA-205ENST00000578314 THSD7AQ9UPZ6 1657 aa32.28■■■□□ 2.76
VAPA-205ENST00000578314 SUGP2Q8IX01 1082 aaKnown RBP eCLIP32.28■■■□□ 2.76
VAPA-205ENST00000578314 ZRANB1Q9UGI0 708 aa32.28■■■□□ 2.76
VAPA-205ENST00000578314 USP31Q70CQ4 1352 aa32.28■■■□□ 2.76
VAPA-205ENST00000578314 NINLQ9Y2I6 1382 aa32.28■■■□□ 2.76
VAPA-205ENST00000578314 ARHGEF25Q86VW2 580 aa32.27■■■□□ 2.76
VAPA-205ENST00000578314 SF3B2Q13435 895 aaKnown RBP32.26■■■□□ 2.75
VAPA-205ENST00000578314 BARGINQ6ZT62 677 aa32.26■■■□□ 2.75
VAPA-205ENST00000578314 CCER1Q8TC90 406 aaPredicted RBP32.26■■■□□ 2.75
VAPA-205ENST00000578314 TMF1P82094 1093 aa32.25■■■□□ 2.75
VAPA-205ENST00000578314 MON2Q7Z3U7 1717 aa32.25■■■□□ 2.75
VAPA-205ENST00000578314 A0A1W2PP64 1363 aa32.24■■■□□ 2.75
VAPA-205ENST00000578314 ZBTB7CA1YPR0 619 aa32.24■■■□□ 2.75
VAPA-205ENST00000578314 USP35Q9P2H5 1018 aa32.24■■■□□ 2.75
VAPA-205ENST00000578314 EDC4Q6P2E9 1401 aaKnown RBP32.24■■■□□ 2.75
VAPA-205ENST00000578314 COL5A2P05997 1499 aaPredicted RBP32.23■■■□□ 2.75
VAPA-205ENST00000578314 DEFB132Q7Z7B7 95 aa32.23■■■□□ 2.75
VAPA-205ENST00000578314 NME9Q86XW9 330 aa32.23■■■□□ 2.75
VAPA-205ENST00000578314 TCP11L2Q8N4U5 519 aa32.22■■■□□ 2.75
VAPA-205ENST00000578314 AXIN2Q9Y2T1 843 aa32.22■■■□□ 2.75
VAPA-205ENST00000578314 THRAP3Q9Y2W1 955 aaKnown RBP32.22■■■□□ 2.75
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms