RNA–Protein interactions for RNA: ENST00000578067.5

LIMD2-203, Transcript of LIM domain containing 2, humanhuman

TSL 1 (best)

Gene LIMD2, Length 2,019 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2-203ENST00000578067 ITSN1Q15811 1721 aa36.42■■■■□ 3.42
LIMD2-203ENST00000578067 XRN1Q8IZH2 1706 aaKnown RBP36.42■■■■□ 3.42
LIMD2-203ENST00000578067 ANKLE2Q86XL3 938 aa36.42■■■■□ 3.42
LIMD2-203ENST00000578067 TRMT2AQ8IZ69 625 aaKnown RBP36.41■■■■□ 3.42
LIMD2-203ENST00000578067 IQSEC2Q5JU85 1478 aa36.41■■■■□ 3.42
LIMD2-203ENST00000578067 TOPAZ1Q8N9V7 1692 aa36.41■■■■□ 3.42
LIMD2-203ENST00000578067 PNPLA6Q8IY17 1366 aa36.4■■■■□ 3.42
LIMD2-203ENST00000578067 PLEKHG3A1L390 1219 aa36.39■■■■□ 3.42
LIMD2-203ENST00000578067 NME9Q86XW9 330 aa36.39■■■■□ 3.42
LIMD2-203ENST00000578067 TCP11L2Q8N4U5 519 aa36.39■■■■□ 3.42
LIMD2-203ENST00000578067 E9PSI1 815 aa36.37■■■■□ 3.41
LIMD2-203ENST00000578067 WWC1Q8IX03 1113 aa36.36■■■■□ 3.41
LIMD2-203ENST00000578067 SETD1BQ9UPS6 1966 aaKnown RBP36.35■■■■□ 3.41
LIMD2-203ENST00000578067 POLKQ9UBT6 870 aa36.34■■■■□ 3.41
LIMD2-203ENST00000578067 DIAPH1O60610 1272 aaKnown RBP36.34■■■■□ 3.41
LIMD2-203ENST00000578067 NCBP3Q53F19 620 aaKnown RBP36.34■■■■□ 3.41
LIMD2-203ENST00000578067 B4GALNT3Q6L9W6 998 aa36.34■■■■□ 3.41
LIMD2-203ENST00000578067 NUTM2FA1L443 756 aa36.33■■■■□ 3.41
LIMD2-203ENST00000578067 U2SURPO15042 1029 aaKnown RBP36.33■■■■□ 3.41
LIMD2-203ENST00000578067 SPINK5Q9NQ38 1064 aaPredicted RBP36.33■■■■□ 3.41
LIMD2-203ENST00000578067 ACEP12821 1306 aa36.33■■■■□ 3.41
LIMD2-203ENST00000578067 KCNA6P17658 529 aa36.32■■■■□ 3.41
LIMD2-203ENST00000578067 COG3Q96JB2 828 aa36.32■■■■□ 3.41
LIMD2-203ENST00000578067 PHF23Q9BUL5 403 aaPredicted RBP36.3■■■■□ 3.4
LIMD2-203ENST00000578067 ZRANB1Q9UGI0 708 aa36.3■■■■□ 3.4
LIMD2-203ENST00000578067 RRP7AQ9Y3A4 280 aaKnown RBP36.3■■■■□ 3.4
LIMD2-203ENST00000578067 NKTRP30414 1462 aaKnown RBP36.3■■■■□ 3.4
LIMD2-203ENST00000578067 NEUROD2Q15784 382 aa36.29■■■■□ 3.4
LIMD2-203ENST00000578067 CCDC27Q2M243 656 aa36.29■■■■□ 3.4
LIMD2-203ENST00000578067 AATKQ6ZMQ8 1374 aa36.29■■■■□ 3.4
LIMD2-203ENST00000578067 DMRT2Q9Y5R5 561 aa36.29■■■■□ 3.4
LIMD2-203ENST00000578067 FBLN1P23142 703 aa36.27■■■■□ 3.4
LIMD2-203ENST00000578067 TTC21BQ7Z4L5 1316 aa36.26■■■■□ 3.4
LIMD2-203ENST00000578067 NRKQ7Z2Y5 1582 aa36.26■■■■□ 3.4
LIMD2-203ENST00000578067 PLEKHF1Q96S99 279 aa36.25■■■■□ 3.39
LIMD2-203ENST00000578067 USP6P35125 1406 aa36.25■■■■□ 3.39
LIMD2-203ENST00000578067 MAP2P11137 1827 aaKnown RBP36.24■■■■□ 3.39
LIMD2-203ENST00000578067 PPM1GO15355 546 aaPredicted RBP36.24■■■■□ 3.39
LIMD2-203ENST00000578067 WDR63Q8IWG1 891 aa36.24■■■■□ 3.39
LIMD2-203ENST00000578067 TSHZ2Q9NRE2 1034 aa36.23■■■■□ 3.39
LIMD2-203ENST00000578067 PNNQ9H307 717 aaKnown RBP36.22■■■■□ 3.39
LIMD2-203ENST00000578067 CHD2O14647 1828 aaKnown RBP36.21■■■■□ 3.39
LIMD2-203ENST00000578067 EMILIN1Q9Y6C2 1016 aa36.2■■■■□ 3.39
LIMD2-203ENST00000578067 PLIN1O60240 522 aa36.2■■■■□ 3.39
LIMD2-203ENST00000578067 CCDC136Q96JN2 1154 aa36.2■■■■□ 3.39
LIMD2-203ENST00000578067 CDK12Q9NYV4 1490 aaPredicted RBP36.19■■■■□ 3.38
LIMD2-203ENST00000578067 EXOC6Q8TAG9 804 aa36.19■■■■□ 3.38
LIMD2-203ENST00000578067 ANKARQ7Z5J8 1434 aa36.19■■■■□ 3.38
LIMD2-203ENST00000578067 MAPK8IP3Q9UPT6 1336 aa36.18■■■■□ 3.38
LIMD2-203ENST00000578067 SSH2Q76I76 1423 aa36.17■■■■□ 3.38
LIMD2-203ENST00000578067 PMFBP1Q8TBY8 1022 aa36.16■■■■□ 3.38
LIMD2-203ENST00000578067 FCHSD2O94868 740 aa36.15■■■■□ 3.38
LIMD2-203ENST00000578067 NPHP4O75161 1426 aaPredicted RBP36.15■■■■□ 3.38
LIMD2-203ENST00000578067 TMPOP42166 694 aaKnown RBP36.13■■■■□ 3.38
LIMD2-203ENST00000578067 OVOS2A0A0J9YW53 1432 aa36.13■■■■□ 3.37
LIMD2-203ENST00000578067 OVOS2Q6IE36 1432 aa36.13■■■■□ 3.37
LIMD2-203ENST00000578067 TTC21AQ8NDW8 1320 aa36.13■■■■□ 3.37
LIMD2-203ENST00000578067 GOLGA6L2Q8N9W4 650 aaPredicted RBP36.12■■■■□ 3.37
LIMD2-203ENST00000578067 NGDNQ8NEJ9 315 aaKnown RBP36.12■■■■□ 3.37
LIMD2-203ENST00000578067 RGPD8O14715 1765 aaPredicted RBP36.12■■■■□ 3.37
LIMD2-203ENST00000578067 FMN2Q9NZ56 1722 aa36.12■■■■□ 3.37
LIMD2-203ENST00000578067 RRS1Q15050 365 aaKnown RBP36.11■■■■□ 3.37
LIMD2-203ENST00000578067 IL13P35225 146 aa36.1■■■■□ 3.37
LIMD2-203ENST00000578067 RSPH6AQ9H0K4 717 aa36.08■■■■□ 3.37
LIMD2-203ENST00000578067 LRRC7Q96NW7 1537 aa36.07■■■■□ 3.36
LIMD2-203ENST00000578067 MYH16Q9H6N6 1097 aa36.06■■■■□ 3.36
LIMD2-203ENST00000578067 USP31Q70CQ4 1352 aa36.05■■■■□ 3.36
LIMD2-203ENST00000578067 CRBNQ96SW2 442 aa36.05■■■■□ 3.36
LIMD2-203ENST00000578067 TRIM35Q9UPQ4 493 aa36.05■■■■□ 3.36
LIMD2-203ENST00000578067 NALCNQ8IZF0 1738 aa36.04■■■■□ 3.36
LIMD2-203ENST00000578067 PRKAR2BP31323 418 aa36.03■■■■□ 3.36
LIMD2-203ENST00000578067 NEFMP07197 916 aa36.03■■■■□ 3.36
LIMD2-203ENST00000578067 RIPK4P57078 832 aa36.02■■■■□ 3.36
LIMD2-203ENST00000578067 C20orf194Q5TEA3 1177 aa36.02■■■■□ 3.36
LIMD2-203ENST00000578067 BCAR3O75815 825 aa36■■■■□ 3.35
LIMD2-203ENST00000578067 HMOX1P09601 288 aa35.99■■■■□ 3.35
LIMD2-203ENST00000578067 ADGRL3Q9HAR2 1447 aa35.98■■■■□ 3.35
LIMD2-203ENST00000578067 IL16Q14005 1332 aa35.96■■■■□ 3.35
LIMD2-203ENST00000578067 RBM33Q96EV2 1170 aaKnown RBP35.95■■■■□ 3.34
LIMD2-203ENST00000578067 PHACTR3Q96KR7 559 aa35.92■■■■□ 3.34
LIMD2-203ENST00000578067 PIK3C2AO00443 1686 aa35.92■■■■□ 3.34
LIMD2-203ENST00000578067 NFE2L2Q16236 605 aa35.91■■■■□ 3.34
LIMD2-203ENST00000578067 PHF8Q9UPP1 1060 aa35.91■■■■□ 3.34
LIMD2-203ENST00000578067 NWD1Q149M9 1564 aa35.91■■■■□ 3.34
LIMD2-203ENST00000578067 RARSP54136 660 aaKnown RBP35.9■■■■□ 3.34
LIMD2-203ENST00000578067 EIF4A2Q14240 407 aaKnown RBP35.9■■■■□ 3.34
LIMD2-203ENST00000578067 FANCIQ9NVI1 1328 aa35.89■■■■□ 3.34
LIMD2-203ENST00000578067 PEAK1Q9H792 1746 aa35.89■■■■□ 3.34
LIMD2-203ENST00000578067 SOX12O15370 315 aa35.86■■■■□ 3.33
LIMD2-203ENST00000578067 CT47B1P0C2W7 299 aaPredicted RBP35.86■■■■□ 3.33
LIMD2-203ENST00000578067 NLRP6P59044 892 aa35.86■■■■□ 3.33
LIMD2-203ENST00000578067 TSR2Q969E8 191 aaKnown RBP35.86■■■■□ 3.33
LIMD2-203ENST00000578067 MAP3K19Q56UN5 1328 aa35.86■■■■□ 3.33
LIMD2-203ENST00000578067 HSP90AB2PQ58FF8 381 aa35.84■■■■□ 3.33
LIMD2-203ENST00000578067 C14orf37Q86TY3 774 aa35.84■■■■□ 3.33
LIMD2-203ENST00000578067 PDE3AQ14432 1141 aa35.83■■■■□ 3.33
LIMD2-203ENST00000578067 SBNO1A3KN83 1393 aa35.82■■■■□ 3.33
LIMD2-203ENST00000578067 USP54Q70EL1 1684 aa35.81■■■■□ 3.32
LIMD2-203ENST00000578067 FLT4P35916 1363 aa35.8■■■■□ 3.32
LIMD2-203ENST00000578067 CANXP27824 592 aaKnown RBP35.8■■■■□ 3.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms