RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 AFF2P51816 1311 aa27.21■■□□□ 1.95
SS18-208ENST00000577751 ZNF772Q68DY9 489 aaPredicted RBP27.21■■□□□ 1.95
SS18-208ENST00000577751 CABLES1Q8TDN4 633 aa27.21■■□□□ 1.95
SS18-208ENST00000577751 AKAP12Q02952 1782 aa27.2■■□□□ 1.95
SS18-208ENST00000577751 CRYBG1Q9Y4K1 1723 aa27.2■■□□□ 1.94
SS18-208ENST00000577751 USP6P35125 1406 aa27.19■■□□□ 1.94
SS18-208ENST00000577751 NGLY1Q96IV0 654 aa27.19■■□□□ 1.94
SS18-208ENST00000577751 ZNF692Q9BU19 519 aaPredicted RBP27.18■■□□□ 1.94
SS18-208ENST00000577751 CPSF1Q10570 1443 aaKnown RBP27.17■■□□□ 1.94
SS18-208ENST00000577751 SSH2Q76I76 1423 aa27.17■■□□□ 1.94
SS18-208ENST00000577751 FNBP4Q8N3X1 1017 aaPredicted RBP27.17■■□□□ 1.94
SS18-208ENST00000577751 HAP1P54257 671 aaPredicted RBP27.13■■□□□ 1.93
SS18-208ENST00000577751 TMF1P82094 1093 aa27.13■■□□□ 1.93
SS18-208ENST00000577751 CD163L1Q9NR16 1453 aa27.13■■□□□ 1.93
SS18-208ENST00000577751 PLEKHG5O94827 1062 aa27.12■■□□□ 1.93
SS18-208ENST00000577751 ABTB2Q8N961 1025 aa27.12■■□□□ 1.93
SS18-208ENST00000577751 MON2Q7Z3U7 1717 aa27.11■■□□□ 1.93
SS18-208ENST00000577751 SLC12A5Q9H2X9 1139 aa27.11■■□□□ 1.93
SS18-208ENST00000577751 NRKQ7Z2Y5 1582 aa27.1■■□□□ 1.93
SS18-208ENST00000577751 PHRF1Q9P1Y6 1649 aaKnown RBP27.1■■□□□ 1.93
SS18-208ENST00000577751 USP21Q9UK80 565 aa27.1■■□□□ 1.93
SS18-208ENST00000577751 SLIT2O94813 1529 aa27.1■■□□□ 1.93
SS18-208ENST00000577751 BCL9LQ86UU0 1499 aa27.09■■□□□ 1.93
SS18-208ENST00000577751 NUTM2GQ5VZR2 741 aa27.09■■□□□ 1.93
SS18-208ENST00000577751 TMC1Q8TDI8 760 aa27.09■■□□□ 1.93
SS18-208ENST00000577751 KTN1Q86UP2 1357 aaKnown RBP27.09■■□□□ 1.93
SS18-208ENST00000577751 NINLQ9Y2I6 1382 aa27.09■■□□□ 1.93
SS18-208ENST00000577751 TTC21BQ7Z4L5 1316 aa27.08■■□□□ 1.93
SS18-208ENST00000577751 EIF4G2P78344 907 aaKnown RBP eCLIP27.07■■□□□ 1.92
SS18-208ENST00000577751 QTRT2Q9H974 415 aaKnown RBP27.07■■□□□ 1.92
SS18-208ENST00000577751 USP19O94966 1318 aa27.07■■□□□ 1.92
SS18-208ENST00000577751 PIK3C2AO00443 1686 aa27.07■■□□□ 1.92
SS18-208ENST00000577751 FAM83GA6ND36 823 aa27.06■■□□□ 1.92
SS18-208ENST00000577751 NLRP13Q86W25 1043 aa27.06■■□□□ 1.92
SS18-208ENST00000577751 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.06■■□□□ 1.92
SS18-208ENST00000577751 CDCA8Q53HL2 280 aa27.05■■□□□ 1.92
SS18-208ENST00000577751 TTC21AQ8NDW8 1320 aa27.05■■□□□ 1.92
SS18-208ENST00000577751 PLCH1Q4KWH8 1693 aa27.05■■□□□ 1.92
SS18-208ENST00000577751 NWD2Q9ULI1 1742 aa27.04■■□□□ 1.92
SS18-208ENST00000577751 HDGFL2Q7Z4V5 671 aaPredicted RBP27.04■■□□□ 1.92
SS18-208ENST00000577751 A0A1W2PP64 1363 aa27.03■■□□□ 1.92
SS18-208ENST00000577751 ATRNO75882 1429 aa27.03■■□□□ 1.92
SS18-208ENST00000577751 HSPA5P11021 654 aaKnown RBP27.03■■□□□ 1.92
SS18-208ENST00000577751 RXRBP28702 533 aa27.03■■□□□ 1.92
SS18-208ENST00000577751 TERF2IPQ9NYB0 399 aa27.03■■□□□ 1.92
SS18-208ENST00000577751 TRPC5Q9UL62 973 aaPredicted RBP27.03■■□□□ 1.92
SS18-208ENST00000577751 COL14A1Q05707 1796 aaKnown RBP27.02■■□□□ 1.92
SS18-208ENST00000577751 NLRP6P59044 892 aa27.02■■□□□ 1.92
SS18-208ENST00000577751 UNC5CLQ8IV45 518 aa27.02■■□□□ 1.92
SS18-208ENST00000577751 RBM6P78332 1123 aaKnown RBP27.01■■□□□ 1.91
SS18-208ENST00000577751 SOCS7O14512 581 aa27■■□□□ 1.91
SS18-208ENST00000577751 SLIT3O75094 1523 aa27■■□□□ 1.91
SS18-208ENST00000577751 EDC4Q6P2E9 1401 aaKnown RBP26.99■■□□□ 1.91
SS18-208ENST00000577751 GCP02774 474 aa26.99■■□□□ 1.91
SS18-208ENST00000577751 CDK12Q9NYV4 1490 aaPredicted RBP26.99■■□□□ 1.91
SS18-208ENST00000577751 KIAA0232Q92628 1395 aa26.98■■□□□ 1.91
SS18-208ENST00000577751 NRAPQ86VF7 1730 aa26.97■■□□□ 1.91
SS18-208ENST00000577751 ZC3H6P61129 1189 aaKnown RBP26.97■■□□□ 1.91
SS18-208ENST00000577751 USP54Q70EL1 1684 aa26.97■■□□□ 1.91
SS18-208ENST00000577751 CPDO75976 1380 aa26.97■■□□□ 1.91
SS18-208ENST00000577751 ANKRD36BQ8N2N9 1353 aa26.97■■□□□ 1.91
SS18-208ENST00000577751 MYOM1P52179 1685 aa26.96■■□□□ 1.91
SS18-208ENST00000577751 PRDM11Q9NQV5 511 aa26.96■■□□□ 1.91
SS18-208ENST00000577751 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.95■■□□□ 1.9
SS18-208ENST00000577751 USP31Q70CQ4 1352 aa26.95■■□□□ 1.9
SS18-208ENST00000577751 BTG4Q9NY30 223 aa26.94■■□□□ 1.9
SS18-208ENST00000577751 GJD4Q96KN9 370 aaPredicted RBP26.93■■□□□ 1.9
SS18-208ENST00000577751 VPS72Q15906 364 aa26.92■■□□□ 1.9
SS18-208ENST00000577751 NME9Q86XW9 330 aa26.92■■□□□ 1.9
SS18-208ENST00000577751 CHRNA2Q15822 529 aa26.91■■□□□ 1.9
SS18-208ENST00000577751 LMO7Q8WWI1 1683 aa26.9■■□□□ 1.9
SS18-208ENST00000577751 GLI3P10071 1580 aa26.9■■□□□ 1.9
SS18-208ENST00000577751 ZRANB1Q9UGI0 708 aa26.9■■□□□ 1.9
SS18-208ENST00000577751 KCNH5Q8NCM2 988 aa26.89■■□□□ 1.9
SS18-208ENST00000577751 RGS12O14924 1447 aa26.89■■□□□ 1.89
SS18-208ENST00000577751 CAMTA1Q9Y6Y1 1673 aa26.87■■□□□ 1.89
SS18-208ENST00000577751 NFAT5O94916 1531 aa26.86■■□□□ 1.89
SS18-208ENST00000577751 OVOS2A0A0J9YW53 1432 aa26.85■■□□□ 1.89
SS18-208ENST00000577751 OVOS2Q6IE36 1432 aa26.85■■□□□ 1.89
SS18-208ENST00000577751 COL18A1P39060 1754 aa26.85■■□□□ 1.89
SS18-208ENST00000577751 C11orf95C9JLR9 678 aaPredicted RBP26.85■■□□□ 1.89
SS18-208ENST00000577751 ARHGEF25Q86VW2 580 aa26.84■■□□□ 1.89
SS18-208ENST00000577751 AATKQ6ZMQ8 1374 aa26.84■■□□□ 1.89
SS18-208ENST00000577751 CARD14Q9BXL6 1004 aa26.83■■□□□ 1.89
SS18-208ENST00000577751 ONECUT3O60422 494 aaPredicted RBP26.81■■□□□ 1.88
SS18-208ENST00000577751 FYB1O15117 783 aa26.8■■□□□ 1.88
SS18-208ENST00000577751 CCDC9Q9Y3X0 531 aaKnown RBP26.8■■□□□ 1.88
SS18-208ENST00000577751 SPATA31A5Q5VU36 1347 aa26.8■■□□□ 1.88
SS18-208ENST00000577751 SPATA31A7Q8IWB4 1347 aa26.8■■□□□ 1.88
SS18-208ENST00000577751 SOX12O15370 315 aa26.79■■□□□ 1.88
SS18-208ENST00000577751 POLR3GLQ9BT43 218 aa26.79■■□□□ 1.88
SS18-208ENST00000577751 COL5A2P05997 1499 aaPredicted RBP26.78■■□□□ 1.88
SS18-208ENST00000577751 EVA1CP58658 441 aa26.77■■□□□ 1.88
SS18-208ENST00000577751 STRN4Q9NRL3 753 aa26.77■■□□□ 1.88
SS18-208ENST00000577751 KIF20BQ96Q89 1820 aa26.76■■□□□ 1.88
SS18-208ENST00000577751 ABCC6O95255 1503 aa26.76■■□□□ 1.87
SS18-208ENST00000577751 NSD3Q9BZ95 1437 aa26.76■■□□□ 1.87
SS18-208ENST00000577751 ZBTB7CA1YPR0 619 aa26.76■■□□□ 1.87
SS18-208ENST00000577751 COG3Q96JB2 828 aa26.76■■□□□ 1.87
SS18-208ENST00000577751 AXIN2Q9Y2T1 843 aa26.76■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms