RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 SPIRE2Q8WWL2 714 aa8.95□□□□□ -0.98
VPS53-219ENST00000576019 ADGRG1Q9Y653 693 aa8.95□□□□□ -0.98
VPS53-219ENST00000576019 CAMSAP1Q5T5Y3 1602 aa8.94□□□□□ -0.98
VPS53-219ENST00000576019 PHF14O94880 888 aa8.94□□□□□ -0.98
VPS53-219ENST00000576019 USP17L8P0C7I0 530 aa8.94□□□□□ -0.98
VPS53-219ENST00000576019 YY1P25490 414 aa8.94□□□□□ -0.98
VPS53-219ENST00000576019 QPCTQ16769 361 aa8.94□□□□□ -0.98
VPS53-219ENST00000576019 EPAS1Q99814 870 aa8.94□□□□□ -0.98
VPS53-219ENST00000576019 HSP90B1P14625 803 aaKnown RBP8.93□□□□□ -0.98
VPS53-219ENST00000576019 PPP1R12CQ9BZL4 782 aa8.93□□□□□ -0.98
VPS53-219ENST00000576019 TTBK1Q5TCY1 1321 aaPredicted RBP8.93□□□□□ -0.98
VPS53-219ENST00000576019 AKNAQ7Z591 1439 aa8.92□□□□□ -0.98
VPS53-219ENST00000576019 HMGB1P09429 215 aaKnown RBP8.92□□□□□ -0.98
VPS53-219ENST00000576019 CDK11BP21127 795 aaKnown RBP8.92□□□□□ -0.98
VPS53-219ENST00000576019 RSBN1LQ6PCB5 846 aaPredicted RBP8.92□□□□□ -0.98
VPS53-219ENST00000576019 ZNF710Q8N1W2 664 aa8.92□□□□□ -0.98
VPS53-219ENST00000576019 VRTNQ9H8Y1 702 aa8.92□□□□□ -0.98
VPS53-219ENST00000576019 CDK11AQ9UQ88 783 aaPredicted RBP8.92□□□□□ -0.98
VPS53-219ENST00000576019 SPTLC1O15269 473 aa8.91□□□□□ -0.98
VPS53-219ENST00000576019 MLECQ14165 292 aa8.91□□□□□ -0.98
VPS53-219ENST00000576019 NDUFB9Q9Y6M9 179 aa8.91□□□□□ -0.98
VPS53-219ENST00000576019 LRRC7Q96NW7 1537 aa8.9□□□□□ -0.98
VPS53-219ENST00000576019 LMOD1P29536 600 aaPredicted RBP8.9□□□□□ -0.98
VPS53-219ENST00000576019 TUSC1Q2TAM9 212 aa8.9□□□□□ -0.98
VPS53-219ENST00000576019 CDCA8Q53HL2 280 aa8.9□□□□□ -0.98
VPS53-219ENST00000576019 TRIM52Q96A61 297 aa8.9□□□□□ -0.98
VPS53-219ENST00000576019 ANO8Q9HCE9 1232 aaPredicted RBP8.9□□□□□ -0.98
VPS53-219ENST00000576019 PCDHGA10Q9Y5H3 936 aa8.9□□□□□ -0.98
VPS53-219ENST00000576019 CEP350Q5VT06 3117 aa8.9□□□□□ -0.98
VPS53-219ENST00000576019 NEO1Q92859 1461 aa8.89□□□□□ -0.99
VPS53-219ENST00000576019 CDK12Q9NYV4 1490 aaPredicted RBP8.89□□□□□ -0.99
VPS53-219ENST00000576019 PALM3A6NDB9 673 aaPredicted RBP8.89□□□□□ -0.99
VPS53-219ENST00000576019 TMEM88BA6NKF7 163 aa8.89□□□□□ -0.99
VPS53-219ENST00000576019 VAC14Q08AM6 782 aa8.89□□□□□ -0.99
VPS53-219ENST00000576019 RTL5Q5HYW3 569 aaPredicted RBP8.89□□□□□ -0.99
VPS53-219ENST00000576019 GJD4Q96KN9 370 aaPredicted RBP8.89□□□□□ -0.99
VPS53-219ENST00000576019 RAPGEF6Q8TEU7 1601 aa8.88□□□□□ -0.99
VPS53-219ENST00000576019 MOXD2PA6NHM9 499 aa8.88□□□□□ -0.99
VPS53-219ENST00000576019 LILRB3O75022 631 aa8.88□□□□□ -0.99
VPS53-219ENST00000576019 PTCD2Q8WV60 388 aaKnown RBP8.88□□□□□ -0.99
VPS53-219ENST00000576019 PUS7Q96PZ0 661 aaKnown RBP8.88□□□□□ -0.99
VPS53-219ENST00000576019 CARMIL2Q6F5E8 1435 aa8.88□□□□□ -0.99
VPS53-219ENST00000576019 NDUFV2P19404 249 aa8.87□□□□□ -0.99
VPS53-219ENST00000576019 WASHC4Q2M389 1173 aa8.87□□□□□ -0.99
VPS53-219ENST00000576019 TYW1BQ6NUM6 668 aa8.87□□□□□ -0.99
VPS53-219ENST00000576019 NUTM1Q86Y26 1132 aa8.87□□□□□ -0.99
VPS53-219ENST00000576019 CABLES1Q8TDN4 633 aa8.87□□□□□ -0.99
VPS53-219ENST00000576019 PCDHB15Q9Y5E8 787 aa8.87□□□□□ -0.99
VPS53-219ENST00000576019 RICTORQ6R327 1708 aa8.87□□□□□ -0.99
VPS53-219ENST00000576019 PLA2R1Q13018 1463 aa8.87□□□□□ -0.99
VPS53-219ENST00000576019 TCOF1Q13428 1488 aaKnown RBP8.87□□□□□ -0.99
VPS53-219ENST00000576019 C3P01024 1663 aa8.86□□□□□ -0.99
VPS53-219ENST00000576019 NUTM2BA6NNL0 878 aaPredicted RBP8.86□□□□□ -0.99
VPS53-219ENST00000576019 NUTM2EB1AL46 878 aaPredicted RBP8.86□□□□□ -0.99
VPS53-219ENST00000576019 NUTM2DQ5VT03 806 aaPredicted RBP8.86□□□□□ -0.99
VPS53-219ENST00000576019 NUTM2AQ8IVF1 878 aaPredicted RBP8.86□□□□□ -0.99
VPS53-219ENST00000576019 ZMYM4Q5VZL5 1548 aa8.85□□□□□ -0.99
VPS53-219ENST00000576019 GPR37L1O60883 481 aa8.85□□□□□ -0.99
VPS53-219ENST00000576019 CD46P15529 392 aa8.85□□□□□ -0.99
VPS53-219ENST00000576019 RSPH4AQ5TD94 716 aa8.85□□□□□ -0.99
VPS53-219ENST00000576019 KCNH8Q96L42 1107 aa8.85□□□□□ -0.99
VPS53-219ENST00000576019 UCN2Q96RP3 112 aa8.85□□□□□ -0.99
VPS53-219ENST00000576019 TFIP11Q9UBB9 837 aaKnown RBP8.85□□□□□ -0.99
VPS53-219ENST00000576019 TRAPPC8Q9Y2L5 1435 aa8.85□□□□□ -0.99
VPS53-219ENST00000576019 EFCAB5A4FU69 1503 aa8.85□□□□□ -0.99
VPS53-219ENST00000576019 ZFYVE16Q7Z3T8 1539 aa8.85□□□□□ -0.99
VPS53-219ENST00000576019 SHANK2Q9UPX8 1470 aa8.84□□□□□ -0.99
VPS53-219ENST00000576019 SNPHO15079 494 aa8.84□□□□□ -0.99
VPS53-219ENST00000576019 ATG7O95352 703 aa8.84□□□□□ -0.99
VPS53-219ENST00000576019 HMX1Q9NP08 348 aaPredicted RBP8.84□□□□□ -0.99
VPS53-219ENST00000576019 FHOD3Q2V2M9 1422 aa8.83□□□□□ -1
VPS53-219ENST00000576019 RBM47A0AV96 593 aaKnown RBP8.83□□□□□ -1
VPS53-219ENST00000576019 RBM46Q8TBY0 533 aaKnown RBP8.83□□□□□ -1
VPS53-219ENST00000576019 IGSF5Q9NSI5 407 aa8.83□□□□□ -1
VPS53-219ENST00000576019 GNEQ9Y223 722 aaKnown RBP8.83□□□□□ -1
VPS53-219ENST00000576019 RNF17Q9BXT8 1623 aaKnown RBP8.83□□□□□ -1
VPS53-219ENST00000576019 LCE2DQ5TA82 110 aaPredicted RBP8.82□□□□□ -1
VPS53-219ENST00000576019 ALG2Q9H553 416 aa8.82□□□□□ -1
VPS53-219ENST00000576019 RAPGEF2Q9Y4G8 1499 aa8.82□□□□□ -1
VPS53-219ENST00000576019 ABCA9Q8IUA7 1624 aa8.81□□□□□ -1
VPS53-219ENST00000576019 TTC13Q8NBP0 860 aa8.81□□□□□ -1
VPS53-219ENST00000576019 TRIM34Q9BYJ4 488 aa8.81□□□□□ -1
VPS53-219ENST00000576019 DDX11L8A8MPP1 907 aa8.8□□□□□ -1
VPS53-219ENST00000576019 FAM163AQ96GL9 167 aaPredicted RBP8.8□□□□□ -1
VPS53-219ENST00000576019 KIAA1522Q9P206 1035 aaPredicted RBP8.8□□□□□ -1
VPS53-219ENST00000576019 MAFBQ9Y5Q3 323 aaPredicted RBP8.8□□□□□ -1
VPS53-219ENST00000576019 DENND4BO75064 1496 aaPredicted RBP8.8□□□□□ -1
VPS53-219ENST00000576019 MAGI2Q86UL8 1455 aa8.8□□□□□ -1
VPS53-219ENST00000576019 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.79□□□□□ -1
VPS53-219ENST00000576019 ZNF772Q68DY9 489 aaPredicted RBP8.79□□□□□ -1
VPS53-219ENST00000576019 B4GALNT3Q6L9W6 998 aa8.79□□□□□ -1
VPS53-219ENST00000576019 PRR7Q8TB68 274 aa8.79□□□□□ -1
VPS53-219ENST00000576019 MRRFQ96E11 262 aaKnown RBP8.79□□□□□ -1
VPS53-219ENST00000576019 RBM27Q9P2N5 1060 aaKnown RBP8.79□□□□□ -1
VPS53-219ENST00000576019 NHSL1Q5SYE7 1610 aa8.79□□□□□ -1
VPS53-219ENST00000576019 WRNQ14191 1432 aaPredicted RBP eCLIP8.79□□□□□ -1
VPS53-219ENST00000576019 RCCD1A6NED2 376 aa8.78□□□□□ -1
VPS53-219ENST00000576019 HOXB3P14651 431 aaPredicted RBP8.78□□□□□ -1
VPS53-219ENST00000576019 GJA5P36382 358 aa8.78□□□□□ -1
VPS53-219ENST00000576019 C6orf132Q5T0Z8 1188 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms