RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 TTC21AQ8NDW8 1320 aa13.29□□□□□ -0.28
CCDC40-214ENST00000575431 KTN1Q86UP2 1357 aaKnown RBP13.29□□□□□ -0.28
CCDC40-214ENST00000575431 MED1Q15648 1581 aaPredicted RBP13.28□□□□□ -0.28
CCDC40-214ENST00000575431 MON2Q7Z3U7 1717 aa13.27□□□□□ -0.28
CCDC40-214ENST00000575431 NUTM2BA6NNL0 878 aaPredicted RBP13.27□□□□□ -0.29
CCDC40-214ENST00000575431 NUTM2EB1AL46 878 aaPredicted RBP13.27□□□□□ -0.29
CCDC40-214ENST00000575431 HAP1P54257 671 aaPredicted RBP13.27□□□□□ -0.29
CCDC40-214ENST00000575431 MEX3CQ5U5Q3 659 aaKnown RBP13.27□□□□□ -0.29
CCDC40-214ENST00000575431 NLRP13Q86W25 1043 aa13.27□□□□□ -0.29
CCDC40-214ENST00000575431 NUTM2AQ8IVF1 878 aaPredicted RBP13.27□□□□□ -0.29
CCDC40-214ENST00000575431 ABTB2Q8N961 1025 aa13.27□□□□□ -0.29
CCDC40-214ENST00000575431 ANKRD36BQ8N2N9 1353 aa13.27□□□□□ -0.29
CCDC40-214ENST00000575431 SSH2Q76I76 1423 aa13.27□□□□□ -0.29
CCDC40-214ENST00000575431 TTC21BQ7Z4L5 1316 aa13.26□□□□□ -0.29
CCDC40-214ENST00000575431 CD163L1Q9NR16 1453 aa13.26□□□□□ -0.29
CCDC40-214ENST00000575431 EDC4Q6P2E9 1401 aaKnown RBP13.25□□□□□ -0.29
CCDC40-214ENST00000575431 PHF23Q9BUL5 403 aaPredicted RBP13.25□□□□□ -0.29
CCDC40-214ENST00000575431 LRP6O75581 1613 aa13.24□□□□□ -0.29
CCDC40-214ENST00000575431 A0A1W2PP64 1363 aa13.24□□□□□ -0.29
CCDC40-214ENST00000575431 NRKQ7Z2Y5 1582 aa13.24□□□□□ -0.29
CCDC40-214ENST00000575431 MARF1Q9Y4F3 1742 aaKnown RBP13.23□□□□□ -0.29
CCDC40-214ENST00000575431 NLRP6P59044 892 aa13.23□□□□□ -0.29
CCDC40-214ENST00000575431 MYOM1P52179 1685 aa13.22□□□□□ -0.29
CCDC40-214ENST00000575431 ADAMTS2O95450 1211 aa13.22□□□□□ -0.29
CCDC40-214ENST00000575431 POLR3GLQ9BT43 218 aa13.22□□□□□ -0.29
CCDC40-214ENST00000575431 USP31Q70CQ4 1352 aa13.21□□□□□ -0.29
CCDC40-214ENST00000575431 USP19O94966 1318 aa13.21□□□□□ -0.29
CCDC40-214ENST00000575431 KCNH5Q8NCM2 988 aa13.21□□□□□ -0.29
CCDC40-214ENST00000575431 CABLES1Q8TDN4 633 aa13.21□□□□□ -0.29
CCDC40-214ENST00000575431 NGLY1Q96IV0 654 aa13.21□□□□□ -0.29
CCDC40-214ENST00000575431 ABCA3Q99758 1704 aa13.21□□□□□ -0.3
CCDC40-214ENST00000575431 CRYBG1Q9Y4K1 1723 aa13.21□□□□□ -0.3
CCDC40-214ENST00000575431 C11orf95C9JLR9 678 aaPredicted RBP13.2□□□□□ -0.3
CCDC40-214ENST00000575431 ZNF772Q68DY9 489 aaPredicted RBP13.2□□□□□ -0.3
CCDC40-214ENST00000575431 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.2□□□□□ -0.3
CCDC40-214ENST00000575431 C8orf37Q96NL8 207 aa13.2□□□□□ -0.3
CCDC40-214ENST00000575431 PIK3C2AO00443 1686 aa13.2□□□□□ -0.3
CCDC40-214ENST00000575431 KIF7Q2M1P5 1343 aa13.19□□□□□ -0.3
CCDC40-214ENST00000575431 GCP02774 474 aa13.19□□□□□ -0.3
CCDC40-214ENST00000575431 NUTM2GQ5VZR2 741 aa13.19□□□□□ -0.3
CCDC40-214ENST00000575431 FNBP4Q8N3X1 1017 aaPredicted RBP13.19□□□□□ -0.3
CCDC40-214ENST00000575431 PHRF1Q9P1Y6 1649 aaKnown RBP13.19□□□□□ -0.3
CCDC40-214ENST00000575431 USP54Q70EL1 1684 aa13.18□□□□□ -0.3
CCDC40-214ENST00000575431 CCDC7Q96M83 1385 aa13.18□□□□□ -0.3
CCDC40-214ENST00000575431 SLIT3O75094 1523 aa13.18□□□□□ -0.3
CCDC40-214ENST00000575431 PLEKHG5O94827 1062 aa13.17□□□□□ -0.3
CCDC40-214ENST00000575431 NME9Q86XW9 330 aa13.17□□□□□ -0.3
CCDC40-214ENST00000575431 CPDO75976 1380 aa13.17□□□□□ -0.3
CCDC40-214ENST00000575431 AFF2P51816 1311 aa13.16□□□□□ -0.3
CCDC40-214ENST00000575431 CGNL1Q0VF96 1302 aa13.16□□□□□ -0.3
CCDC40-214ENST00000575431 COG3Q96JB2 828 aa13.16□□□□□ -0.3
CCDC40-214ENST00000575431 CARD14Q9BXL6 1004 aa13.16□□□□□ -0.3
CCDC40-214ENST00000575431 PANK3Q9H999 370 aa13.16□□□□□ -0.3
CCDC40-214ENST00000575431 PRDM11Q9NQV5 511 aa13.16□□□□□ -0.3
CCDC40-214ENST00000575431 COL14A1Q05707 1796 aaKnown RBP13.16□□□□□ -0.3
CCDC40-214ENST00000575431 NWD2Q9ULI1 1742 aa13.16□□□□□ -0.3
CCDC40-214ENST00000575431 WASHC2AQ641Q2 1341 aa13.15□□□□□ -0.3
CCDC40-214ENST00000575431 SLIT2O94813 1529 aa13.15□□□□□ -0.3
CCDC40-214ENST00000575431 FYB1O15117 783 aa13.15□□□□□ -0.3
CCDC40-214ENST00000575431 USP21Q9UK80 565 aa13.15□□□□□ -0.3
CCDC40-214ENST00000575431 NSD3Q9BZ95 1437 aa13.14□□□□□ -0.31
CCDC40-214ENST00000575431 FAM83GA6ND36 823 aa13.14□□□□□ -0.31
CCDC40-214ENST00000575431 RGS17Q9UGC6 210 aaPredicted RBP13.14□□□□□ -0.31
CCDC40-214ENST00000575431 TRPC5Q9UL62 973 aaPredicted RBP13.14□□□□□ -0.31
CCDC40-214ENST00000575431 KIAA0232Q92628 1395 aa13.14□□□□□ -0.31
CCDC40-214ENST00000575431 OVOS2A0A0J9YW53 1432 aa13.13□□□□□ -0.31
CCDC40-214ENST00000575431 OVOS2Q6IE36 1432 aa13.13□□□□□ -0.31
CCDC40-214ENST00000575431 KIF20BQ96Q89 1820 aa13.13□□□□□ -0.31
CCDC40-214ENST00000575431 ZC3H6P61129 1189 aaKnown RBP13.13□□□□□ -0.31
CCDC40-214ENST00000575431 UNC5CLQ8IV45 518 aa13.13□□□□□ -0.31
CCDC40-214ENST00000575431 KNSTRNQ9Y448 316 aa13.13□□□□□ -0.31
CCDC40-214ENST00000575431 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.13□□□□□ -0.31
CCDC40-214ENST00000575431 PLCH1Q4KWH8 1693 aa13.12□□□□□ -0.31
CCDC40-214ENST00000575431 BCL9LQ86UU0 1499 aa13.12□□□□□ -0.31
CCDC40-214ENST00000575431 NSD2O96028 1365 aa13.12□□□□□ -0.31
CCDC40-214ENST00000575431 AATKQ6ZMQ8 1374 aa13.12□□□□□ -0.31
CCDC40-214ENST00000575431 ARHGEF25Q86VW2 580 aa13.11□□□□□ -0.31
CCDC40-214ENST00000575431 GGNBP2Q9H3C7 697 aa13.11□□□□□ -0.31
CCDC40-214ENST00000575431 QTRT2Q9H974 415 aaKnown RBP13.11□□□□□ -0.31
CCDC40-214ENST00000575431 BTG4Q9NY30 223 aa13.11□□□□□ -0.31
CCDC40-214ENST00000575431 ZRANB1Q9UGI0 708 aa13.11□□□□□ -0.31
CCDC40-214ENST00000575431 ABCC6O95255 1503 aa13.11□□□□□ -0.31
CCDC40-214ENST00000575431 NFAT5O94916 1531 aa13.1□□□□□ -0.31
CCDC40-214ENST00000575431 RBM6P78332 1123 aaKnown RBP13.1□□□□□ -0.31
CCDC40-214ENST00000575431 SOX12O15370 315 aa13.09□□□□□ -0.31
CCDC40-214ENST00000575431 ATRNO75882 1429 aa13.09□□□□□ -0.31
CCDC40-214ENST00000575431 RXRBP28702 533 aa13.09□□□□□ -0.31
CCDC40-214ENST00000575431 EVA1CP58658 441 aa13.09□□□□□ -0.31
CCDC40-214ENST00000575431 CHRNA2Q15822 529 aa13.09□□□□□ -0.31
CCDC40-214ENST00000575431 VPS72Q15906 364 aa13.09□□□□□ -0.31
CCDC40-214ENST00000575431 POTEAQ6S8J7 498 aa13.09□□□□□ -0.31
CCDC40-214ENST00000575431 LMO7Q8WWI1 1683 aa13.08□□□□□ -0.31
CCDC40-214ENST00000575431 ANKRD26Q9UPS8 1709 aa13.08□□□□□ -0.32
CCDC40-214ENST00000575431 PER1O15534 1290 aaPredicted RBP13.08□□□□□ -0.32
CCDC40-214ENST00000575431 GJD4Q96KN9 370 aaPredicted RBP13.08□□□□□ -0.32
CCDC40-214ENST00000575431 NRAPQ86VF7 1730 aa13.08□□□□□ -0.32
CCDC40-214ENST00000575431 KIF24Q5T7B8 1368 aa13.07□□□□□ -0.32
CCDC40-214ENST00000575431 ZBTB7CA1YPR0 619 aa13.07□□□□□ -0.32
CCDC40-214ENST00000575431 LTN1O94822 1766 aa13.07□□□□□ -0.32
CCDC40-214ENST00000575431 NPC1L1Q9UHC9 1359 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms