RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 SSH2Q76I76 1423 aa23.59■■□□□ 1.37
NUP88-210ENST00000574867 TNS3Q68CZ2 1445 aa23.58■■□□□ 1.37
NUP88-210ENST00000574867 ALS2Q96Q42 1657 aa23.58■■□□□ 1.36
NUP88-210ENST00000574867 LRRC59Q96AG4 307 aaKnown RBP23.56■■□□□ 1.36
NUP88-210ENST00000574867 HSPA1LP34931 641 aa23.55■■□□□ 1.36
NUP88-210ENST00000574867 TTC21AQ8NDW8 1320 aa23.55■■□□□ 1.36
NUP88-210ENST00000574867 SPATA31A3Q5VYP0 1347 aa23.54■■□□□ 1.36
NUP88-210ENST00000574867 ARHGEF10O15013 1369 aa23.54■■□□□ 1.36
NUP88-210ENST00000574867 PANK3Q9H999 370 aa23.54■■□□□ 1.36
NUP88-210ENST00000574867 NSD3Q9BZ95 1437 aa23.54■■□□□ 1.36
NUP88-210ENST00000574867 TTC21BQ7Z4L5 1316 aa23.53■■□□□ 1.36
NUP88-210ENST00000574867 SHPRHQ149N8 1683 aa23.53■■□□□ 1.36
NUP88-210ENST00000574867 PAK3O75914 559 aaPredicted RBP23.53■■□□□ 1.36
NUP88-210ENST00000574867 PIK3C2AO00443 1686 aa23.52■■□□□ 1.36
NUP88-210ENST00000574867 COL22A1Q8NFW1 1626 aaPredicted RBP23.51■■□□□ 1.35
NUP88-210ENST00000574867 KIF20BQ96Q89 1820 aa23.51■■□□□ 1.35
NUP88-210ENST00000574867 CARD14Q9BXL6 1004 aa23.5■■□□□ 1.35
NUP88-210ENST00000574867 USP54Q70EL1 1684 aa23.5■■□□□ 1.35
NUP88-210ENST00000574867 MED1Q15648 1581 aaPredicted RBP23.5■■□□□ 1.35
NUP88-210ENST00000574867 JCADQ9P266 1359 aa23.49■■□□□ 1.35
NUP88-210ENST00000574867 PNPLA6Q8IY17 1366 aa23.49■■□□□ 1.35
NUP88-210ENST00000574867 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.48■■□□□ 1.35
NUP88-210ENST00000574867 CGNL1Q0VF96 1302 aa23.47■■□□□ 1.35
NUP88-210ENST00000574867 LMOD2Q6P5Q4 547 aa23.47■■□□□ 1.35
NUP88-210ENST00000574867 ABTB2Q8N961 1025 aa23.47■■□□□ 1.35
NUP88-210ENST00000574867 KNSTRNQ9Y448 316 aa23.45■■□□□ 1.35
NUP88-210ENST00000574867 CRYBG1Q9Y4K1 1723 aa23.45■■□□□ 1.34
NUP88-210ENST00000574867 USP31Q70CQ4 1352 aa23.45■■□□□ 1.34
NUP88-210ENST00000574867 ABCA3Q99758 1704 aa23.44■■□□□ 1.34
NUP88-210ENST00000574867 MARF1Q9Y4F3 1742 aaKnown RBP23.44■■□□□ 1.34
NUP88-210ENST00000574867 ANKRD26Q9UPS8 1709 aa23.43■■□□□ 1.34
NUP88-210ENST00000574867 NSD2O96028 1365 aa23.43■■□□□ 1.34
NUP88-210ENST00000574867 DDX10Q13206 875 aaKnown RBP23.43■■□□□ 1.34
NUP88-210ENST00000574867 OVOS2A0A0J9YW53 1432 aa23.43■■□□□ 1.34
NUP88-210ENST00000574867 OVOS2Q6IE36 1432 aa23.43■■□□□ 1.34
NUP88-210ENST00000574867 PHRF1Q9P1Y6 1649 aaKnown RBP23.43■■□□□ 1.34
NUP88-210ENST00000574867 PER1O15534 1290 aaPredicted RBP23.42■■□□□ 1.34
NUP88-210ENST00000574867 NLRP13Q86W25 1043 aa23.42■■□□□ 1.34
NUP88-210ENST00000574867 NME9Q86XW9 330 aa23.42■■□□□ 1.34
NUP88-210ENST00000574867 NLRP6P59044 892 aa23.41■■□□□ 1.34
NUP88-210ENST00000574867 USP19O94966 1318 aa23.41■■□□□ 1.34
NUP88-210ENST00000574867 SLIT3O75094 1523 aa23.41■■□□□ 1.34
NUP88-210ENST00000574867 FYB1O15117 783 aa23.4■■□□□ 1.34
NUP88-210ENST00000574867 SPATA31A6Q5VVP1 1343 aa23.4■■□□□ 1.34
NUP88-210ENST00000574867 NPC1L1Q9UHC9 1359 aa23.39■■□□□ 1.34
NUP88-210ENST00000574867 NUTM2GQ5VZR2 741 aa23.39■■□□□ 1.33
NUP88-210ENST00000574867 COG3Q96JB2 828 aa23.38■■□□□ 1.33
NUP88-210ENST00000574867 AMER1Q5JTC6 1135 aaPredicted RBP23.37■■□□□ 1.33
NUP88-210ENST00000574867 ILDR1Q86SU0 546 aaPredicted RBP23.37■■□□□ 1.33
NUP88-210ENST00000574867 GGNBP2Q9H3C7 697 aa23.36■■□□□ 1.33
NUP88-210ENST00000574867 ZRANB1Q9UGI0 708 aa23.35■■□□□ 1.33
NUP88-210ENST00000574867 HAP1P54257 671 aaPredicted RBP23.33■■□□□ 1.33
NUP88-210ENST00000574867 KCNH5Q8NCM2 988 aa23.33■■□□□ 1.33
NUP88-210ENST00000574867 CABLES1Q8TDN4 633 aa23.32■■□□□ 1.32
NUP88-210ENST00000574867 NFAT5O94916 1531 aa23.32■■□□□ 1.32
NUP88-210ENST00000574867 GCP02774 474 aa23.31■■□□□ 1.32
NUP88-210ENST00000574867 LRP6O75581 1613 aa23.3■■□□□ 1.32
NUP88-210ENST00000574867 PLEKHG5O94827 1062 aa23.3■■□□□ 1.32
NUP88-210ENST00000574867 CC2D1BQ5T0F9 858 aaKnown RBP23.28■■□□□ 1.32
NUP88-210ENST00000574867 CPDO75976 1380 aa23.28■■□□□ 1.32
NUP88-210ENST00000574867 NUTM2BA6NNL0 878 aaPredicted RBP23.28■■□□□ 1.32
NUP88-210ENST00000574867 NUTM2EB1AL46 878 aaPredicted RBP23.28■■□□□ 1.32
NUP88-210ENST00000574867 NUTM2AQ8IVF1 878 aaPredicted RBP23.28■■□□□ 1.32
NUP88-210ENST00000574867 MORC1Q86VD1 984 aa23.27■■□□□ 1.32
NUP88-210ENST00000574867 LTN1O94822 1766 aa23.26■■□□□ 1.31
NUP88-210ENST00000574867 AATKQ6ZMQ8 1374 aa23.26■■□□□ 1.31
NUP88-210ENST00000574867 ABCC6O95255 1503 aa23.25■■□□□ 1.31
NUP88-210ENST00000574867 SOX12O15370 315 aa23.24■■□□□ 1.31
NUP88-210ENST00000574867 COL14A1Q05707 1796 aaKnown RBP23.24■■□□□ 1.31
NUP88-210ENST00000574867 KIAA0232Q92628 1395 aa23.24■■□□□ 1.31
NUP88-210ENST00000574867 ADAMTS2O95450 1211 aa23.22■■□□□ 1.31
NUP88-210ENST00000574867 PARD3Q8TEW0 1356 aa23.22■■□□□ 1.31
NUP88-210ENST00000574867 ZC3H6P61129 1189 aaKnown RBP23.21■■□□□ 1.31
NUP88-210ENST00000574867 PRDM11Q9NQV5 511 aa23.21■■□□□ 1.31
NUP88-210ENST00000574867 ARHGEF25Q86VW2 580 aa23.21■■□□□ 1.31
NUP88-210ENST00000574867 PLCH1Q4KWH8 1693 aa23.2■■□□□ 1.31
NUP88-210ENST00000574867 MAP2P11137 1827 aaKnown RBP23.2■■□□□ 1.3
NUP88-210ENST00000574867 MEX3CQ5U5Q3 659 aaKnown RBP23.2■■□□□ 1.3
NUP88-210ENST00000574867 LMO7Q8WWI1 1683 aa23.2■■□□□ 1.3
NUP88-210ENST00000574867 CNGB1Q14028 1251 aaPredicted RBP23.2■■□□□ 1.3
NUP88-210ENST00000574867 RTL1A6NKG5 1358 aa23.2■■□□□ 1.3
NUP88-210ENST00000574867 KIF24Q5T7B8 1368 aa23.2■■□□□ 1.3
NUP88-210ENST00000574867 SMG6Q86US8 1419 aaKnown RBP23.19■■□□□ 1.3
NUP88-210ENST00000574867 NWD2Q9ULI1 1742 aa23.19■■□□□ 1.3
NUP88-210ENST00000574867 TNNT2P45379 298 aaPredicted RBP23.18■■□□□ 1.3
NUP88-210ENST00000574867 COL18A1P39060 1754 aa23.18■■□□□ 1.3
NUP88-210ENST00000574867 MAP3K19Q56UN5 1328 aa23.18■■□□□ 1.3
NUP88-210ENST00000574867 RALBP1Q15311 655 aa23.18■■□□□ 1.3
NUP88-210ENST00000574867 RRS1Q15050 365 aaKnown RBP23.17■■□□□ 1.3
NUP88-210ENST00000574867 PEAK1Q9H792 1746 aa23.15■■□□□ 1.3
NUP88-210ENST00000574867 C8orf37Q96NL8 207 aa23.15■■□□□ 1.3
NUP88-210ENST00000574867 SLIT2O94813 1529 aa23.15■■□□□ 1.3
NUP88-210ENST00000574867 ZBTB7CA1YPR0 619 aa23.15■■□□□ 1.3
NUP88-210ENST00000574867 FAM83GA6ND36 823 aa23.15■■□□□ 1.3
NUP88-210ENST00000574867 FBLN1P23142 703 aa23.15■■□□□ 1.3
NUP88-210ENST00000574867 BLMP54132 1417 aaPredicted RBP23.15■■□□□ 1.3
NUP88-210ENST00000574867 FLT4P35916 1363 aa23.14■■□□□ 1.3
NUP88-210ENST00000574867 CHRNA2Q15822 529 aa23.14■■□□□ 1.29
NUP88-210ENST00000574867 CDK12Q9NYV4 1490 aaPredicted RBP23.14■■□□□ 1.29
NUP88-210ENST00000574867 AMPHP49418 695 aa23.13■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms