RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 SLC26A8Q96RN1 970 aa18.32■□□□□ 0.52
VPS33B-208ENST00000574755 SLIT1O75093 1534 aa18.32■□□□□ 0.52
VPS33B-208ENST00000574755 NCKAP5LQ9HCH0 1330 aa18.32■□□□□ 0.52
VPS33B-208ENST00000574755 CCDC27Q2M243 656 aa18.32■□□□□ 0.52
VPS33B-208ENST00000574755 ITSN1Q15811 1721 aa18.31■□□□□ 0.52
VPS33B-208ENST00000574755 WDR63Q8IWG1 891 aa18.31■□□□□ 0.52
VPS33B-208ENST00000574755 MON2Q7Z3U7 1717 aa18.31■□□□□ 0.52
VPS33B-208ENST00000574755 DIAPH1O60610 1272 aaKnown RBP18.31■□□□□ 0.52
VPS33B-208ENST00000574755 ARHGAP23Q9P227 1491 aa18.3■□□□□ 0.52
VPS33B-208ENST00000574755 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.3■□□□□ 0.52
VPS33B-208ENST00000574755 PNPLA6Q8IY17 1366 aa18.3■□□□□ 0.52
VPS33B-208ENST00000574755 MAP2P11137 1827 aaKnown RBP18.3■□□□□ 0.52
VPS33B-208ENST00000574755 AKAP12Q02952 1782 aa18.29■□□□□ 0.52
VPS33B-208ENST00000574755 PPM1GO15355 546 aaPredicted RBP18.29■□□□□ 0.52
VPS33B-208ENST00000574755 BCAR3O75815 825 aa18.29■□□□□ 0.52
VPS33B-208ENST00000574755 NCBP3Q53F19 620 aaKnown RBP18.29■□□□□ 0.52
VPS33B-208ENST00000574755 MAPK8IP3Q9UPT6 1336 aa18.29■□□□□ 0.52
VPS33B-208ENST00000574755 THEMISQ8N1K5 641 aaPredicted RBP18.28■□□□□ 0.52
VPS33B-208ENST00000574755 NME9Q86XW9 330 aa18.28■□□□□ 0.52
VPS33B-208ENST00000574755 PLEKHF1Q96S99 279 aa18.28■□□□□ 0.52
VPS33B-208ENST00000574755 PRR36Q9H6K5 1346 aa18.28■□□□□ 0.52
VPS33B-208ENST00000574755 FBLN1P23142 703 aa18.27■□□□□ 0.52
VPS33B-208ENST00000574755 POLKQ9UBT6 870 aa18.27■□□□□ 0.52
VPS33B-208ENST00000574755 PTPRUQ92729 1446 aa18.27■□□□□ 0.51
VPS33B-208ENST00000574755 ZNF692Q9BU19 519 aaPredicted RBP18.25■□□□□ 0.51
VPS33B-208ENST00000574755 PNNQ9H307 717 aaKnown RBP18.25■□□□□ 0.51
VPS33B-208ENST00000574755 AMOTL2Q9Y2J4 779 aa18.25■□□□□ 0.51
VPS33B-208ENST00000574755 TMPOP42166 694 aaKnown RBP18.24■□□□□ 0.51
VPS33B-208ENST00000574755 COG3Q96JB2 828 aa18.24■□□□□ 0.51
VPS33B-208ENST00000574755 MYH16Q9H6N6 1097 aa18.24■□□□□ 0.51
VPS33B-208ENST00000574755 TBX22Q9Y458 520 aa18.24■□□□□ 0.51
VPS33B-208ENST00000574755 TOPAZ1Q8N9V7 1692 aa18.24■□□□□ 0.51
VPS33B-208ENST00000574755 ZRANB1Q9UGI0 708 aa18.24■□□□□ 0.51
VPS33B-208ENST00000574755 NUTM2FA1L443 756 aa18.23■□□□□ 0.51
VPS33B-208ENST00000574755 DIP2AQ14689 1571 aa18.23■□□□□ 0.51
VPS33B-208ENST00000574755 CANXP27824 592 aaKnown RBP18.22■□□□□ 0.51
VPS33B-208ENST00000574755 EMILIN1Q9Y6C2 1016 aa18.22■□□□□ 0.51
VPS33B-208ENST00000574755 FANCIQ9NVI1 1328 aa18.21■□□□□ 0.51
VPS33B-208ENST00000574755 LRRC7Q96NW7 1537 aa18.21■□□□□ 0.51
VPS33B-208ENST00000574755 AATKQ6ZMQ8 1374 aa18.21■□□□□ 0.51
VPS33B-208ENST00000574755 RIMS1Q86UR5 1692 aaKnown RBP18.21■□□□□ 0.51
VPS33B-208ENST00000574755 CEP170BQ9Y4F5 1589 aaPredicted RBP18.2■□□□□ 0.5
VPS33B-208ENST00000574755 PTCH1Q13635 1447 aa18.2■□□□□ 0.5
VPS33B-208ENST00000574755 FCHSD2O94868 740 aa18.2■□□□□ 0.5
VPS33B-208ENST00000574755 CDK12Q9NYV4 1490 aaPredicted RBP18.2■□□□□ 0.5
VPS33B-208ENST00000574755 ACEP12821 1306 aa18.2■□□□□ 0.5
VPS33B-208ENST00000574755 NRKQ7Z2Y5 1582 aa18.2■□□□□ 0.5
VPS33B-208ENST00000574755 RARSP54136 660 aaKnown RBP18.19■□□□□ 0.5
VPS33B-208ENST00000574755 RIPK4P57078 832 aa18.19■□□□□ 0.5
VPS33B-208ENST00000574755 TRIM35Q9UPQ4 493 aa18.19■□□□□ 0.5
VPS33B-208ENST00000574755 NEFMP07197 916 aa18.19■□□□□ 0.5
VPS33B-208ENST00000574755 PDE3AQ14432 1141 aa18.18■□□□□ 0.5
VPS33B-208ENST00000574755 FRAT1Q92837 279 aaPredicted RBP18.18■□□□□ 0.5
VPS33B-208ENST00000574755 PLEKHG3A1L390 1219 aa18.18■□□□□ 0.5
VPS33B-208ENST00000574755 TCERG1O14776 1098 aaKnown RBP18.18■□□□□ 0.5
VPS33B-208ENST00000574755 PRKAR2BP31323 418 aa18.18■□□□□ 0.5
VPS33B-208ENST00000574755 RSPH6AQ9H0K4 717 aa18.18■□□□□ 0.5
VPS33B-208ENST00000574755 RRS1Q15050 365 aaKnown RBP18.17■□□□□ 0.5
VPS33B-208ENST00000574755 TSR2Q969E8 191 aaKnown RBP18.17■□□□□ 0.5
VPS33B-208ENST00000574755 TTC21BQ7Z4L5 1316 aa18.16■□□□□ 0.5
VPS33B-208ENST00000574755 HMOX1P09601 288 aa18.16■□□□□ 0.5
VPS33B-208ENST00000574755 USP6P35125 1406 aa18.16■□□□□ 0.5
VPS33B-208ENST00000574755 KDM2BQ8NHM5 1336 aa18.16■□□□□ 0.5
VPS33B-208ENST00000574755 XRN1Q8IZH2 1706 aaKnown RBP18.16■□□□□ 0.5
VPS33B-208ENST00000574755 CENPQQ7L2Z9 268 aaPredicted RBP18.16■□□□□ 0.5
VPS33B-208ENST00000574755 IL13P35225 146 aa18.15■□□□□ 0.5
VPS33B-208ENST00000574755 BCL2L13Q9BXK5 485 aa18.15■□□□□ 0.5
VPS33B-208ENST00000574755 IL16Q14005 1332 aa18.14■□□□□ 0.49
VPS33B-208ENST00000574755 RGPD8O14715 1765 aaPredicted RBP18.14■□□□□ 0.49
VPS33B-208ENST00000574755 PANK1Q8TE04 598 aa18.13■□□□□ 0.49
VPS33B-208ENST00000574755 CT47B1P0C2W7 299 aaPredicted RBP18.12■□□□□ 0.49
VPS33B-208ENST00000574755 COG6Q9Y2V7 657 aa18.12■□□□□ 0.49
VPS33B-208ENST00000574755 EXOSC9Q06265 439 aaKnown RBP18.12■□□□□ 0.49
VPS33B-208ENST00000574755 PMFBP1Q8TBY8 1022 aa18.12■□□□□ 0.49
VPS33B-208ENST00000574755 OVOS2A0A0J9YW53 1432 aa18.12■□□□□ 0.49
VPS33B-208ENST00000574755 OVOS2Q6IE36 1432 aa18.12■□□□□ 0.49
VPS33B-208ENST00000574755 KCNA6P17658 529 aa18.11■□□□□ 0.49
VPS33B-208ENST00000574755 MS4A1P11836 297 aa18.11■□□□□ 0.49
VPS33B-208ENST00000574755 PHACTR3Q96KR7 559 aa18.11■□□□□ 0.49
VPS33B-208ENST00000574755 PIK3R4Q99570 1358 aa18.11■□□□□ 0.49
VPS33B-208ENST00000574755 SKAP1Q86WV1 359 aa18.1■□□□□ 0.49
VPS33B-208ENST00000574755 NALCNQ8IZF0 1738 aa18.1■□□□□ 0.49
VPS33B-208ENST00000574755 NFE2L2Q16236 605 aa18.1■□□□□ 0.49
VPS33B-208ENST00000574755 ZNF142P52746 1687 aaPredicted RBP18.09■□□□□ 0.49
VPS33B-208ENST00000574755 NGDNQ8NEJ9 315 aaKnown RBP18.09■□□□□ 0.49
VPS33B-208ENST00000574755 SSH2Q76I76 1423 aa18.08■□□□□ 0.49
VPS33B-208ENST00000574755 MSH5O43196 834 aa18.08■□□□□ 0.48
VPS33B-208ENST00000574755 ANKLE2Q86XL3 938 aa18.08■□□□□ 0.48
VPS33B-208ENST00000574755 CLUAP1Q96AJ1 413 aa18.08■□□□□ 0.48
VPS33B-208ENST00000574755 ADAMTSL3P82987 1691 aa18.08■□□□□ 0.48
VPS33B-208ENST00000574755 TTC21AQ8NDW8 1320 aa18.08■□□□□ 0.48
VPS33B-208ENST00000574755 SMC4Q9NTJ3 1288 aa18.07■□□□□ 0.48
VPS33B-208ENST00000574755 RLBP1P12271 317 aa18.06■□□□□ 0.48
VPS33B-208ENST00000574755 TNNQ9UQP3 1299 aa18.06■□□□□ 0.48
VPS33B-208ENST00000574755 PDE4AP27815 886 aa18.06■□□□□ 0.48
VPS33B-208ENST00000574755 DLG5Q8TDM6 1919 aa18.06■□□□□ 0.48
VPS33B-208ENST00000574755 SOX12O15370 315 aa18.05■□□□□ 0.48
VPS33B-208ENST00000574755 LAS1LQ9Y4W2 734 aaKnown RBP18.05■□□□□ 0.48
VPS33B-208ENST00000574755 USP31Q70CQ4 1352 aa18.05■□□□□ 0.48
VPS33B-208ENST00000574755 ZKSCAN2Q63HK3 967 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms