RNA–Protein interactions for RNA: ENST00000572205.5

SMG6-210, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 4

Gene SMG6, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-210ENST00000572205 XPCQ01831 940 aaPredicted RBP12.52□□□□□ -0.41
SMG6-210ENST00000572205 PHF8Q9UPP1 1060 aa12.52□□□□□ -0.41
SMG6-210ENST00000572205 LRRC59Q96AG4 307 aaKnown RBP12.51□□□□□ -0.41
SMG6-210ENST00000572205 SLIT2O94813 1529 aa12.51□□□□□ -0.41
SMG6-210ENST00000572205 POTEAQ6S8J7 498 aa12.5□□□□□ -0.41
SMG6-210ENST00000572205 PPIP5K1Q6PFW1 1433 aa12.5□□□□□ -0.41
SMG6-210ENST00000572205 GLI3P10071 1580 aa12.5□□□□□ -0.41
SMG6-210ENST00000572205 COL14A1Q05707 1796 aaKnown RBP12.49□□□□□ -0.41
SMG6-210ENST00000572205 SLIT3O75094 1523 aa12.49□□□□□ -0.41
SMG6-210ENST00000572205 BCL9LQ86UU0 1499 aa12.49□□□□□ -0.41
SMG6-210ENST00000572205 NUDT16Q96DE0 195 aaKnown RBP12.48□□□□□ -0.41
SMG6-210ENST00000572205 CDK19Q9BWU1 502 aa12.48□□□□□ -0.41
SMG6-210ENST00000572205 COL18A1P39060 1754 aa12.48□□□□□ -0.41
SMG6-210ENST00000572205 CPSF1Q10570 1443 aaKnown RBP12.47□□□□□ -0.41
SMG6-210ENST00000572205 PMFBP1Q8TBY8 1022 aa12.47□□□□□ -0.41
SMG6-210ENST00000572205 CDK12Q9NYV4 1490 aaPredicted RBP12.46□□□□□ -0.41
SMG6-210ENST00000572205 ATRNO75882 1429 aa12.46□□□□□ -0.41
SMG6-210ENST00000572205 USP6P35125 1406 aa12.46□□□□□ -0.41
SMG6-210ENST00000572205 PLEKHG3A1L390 1219 aa12.46□□□□□ -0.41
SMG6-210ENST00000572205 TESK2Q96S53 571 aa12.46□□□□□ -0.41
SMG6-210ENST00000572205 BRWD3Q6RI45 1802 aa12.46□□□□□ -0.42
SMG6-210ENST00000572205 WNK3Q9BYP7 1800 aa12.46□□□□□ -0.42
SMG6-210ENST00000572205 ARHGEF10O15013 1369 aa12.45□□□□□ -0.42
SMG6-210ENST00000572205 KRT28Q7Z3Y7 464 aa12.45□□□□□ -0.42
SMG6-210ENST00000572205 NFAT5O94916 1531 aa12.45□□□□□ -0.42
SMG6-210ENST00000572205 RGS12O14924 1447 aa12.45□□□□□ -0.42
SMG6-210ENST00000572205 ACEP12821 1306 aa12.44□□□□□ -0.42
SMG6-210ENST00000572205 CABP2Q9NPB3 220 aa12.44□□□□□ -0.42
SMG6-210ENST00000572205 USP47Q96K76 1375 aa12.43□□□□□ -0.42
SMG6-210ENST00000572205 AFF2P51816 1311 aa12.43□□□□□ -0.42
SMG6-210ENST00000572205 THSD7AQ9UPZ6 1657 aa12.43□□□□□ -0.42
SMG6-210ENST00000572205 CARD11Q9BXL7 1154 aa12.43□□□□□ -0.42
SMG6-210ENST00000572205 CCDC61Q9Y6R9 512 aa12.43□□□□□ -0.42
SMG6-210ENST00000572205 RGPD5Q99666 1765 aa12.43□□□□□ -0.42
SMG6-210ENST00000572205 USP19O94966 1318 aa12.42□□□□□ -0.42
SMG6-210ENST00000572205 NUTM2BA6NNL0 878 aaPredicted RBP12.42□□□□□ -0.42
SMG6-210ENST00000572205 NUTM2EB1AL46 878 aaPredicted RBP12.42□□□□□ -0.42
SMG6-210ENST00000572205 NUTM2AQ8IVF1 878 aaPredicted RBP12.42□□□□□ -0.42
SMG6-210ENST00000572205 LTN1O94822 1766 aa12.42□□□□□ -0.42
SMG6-210ENST00000572205 KIF20BQ96Q89 1820 aa12.41□□□□□ -0.42
SMG6-210ENST00000572205 FNBP4Q8N3X1 1017 aaPredicted RBP12.41□□□□□ -0.42
SMG6-210ENST00000572205 TIMELESSQ9UNS1 1208 aa12.41□□□□□ -0.42
SMG6-210ENST00000572205 ATAD2Q6PL18 1390 aa12.41□□□□□ -0.42
SMG6-210ENST00000572205 CABLES1Q8TDN4 633 aa12.4□□□□□ -0.42
SMG6-210ENST00000572205 EVC2Q86UK5 1308 aa12.39□□□□□ -0.43
SMG6-210ENST00000572205 ADAMTS2O95450 1211 aa12.39□□□□□ -0.43
SMG6-210ENST00000572205 C8orf37Q96NL8 207 aa12.39□□□□□ -0.43
SMG6-210ENST00000572205 BRD4O60885 1362 aaPredicted RBP12.39□□□□□ -0.43
SMG6-210ENST00000572205 ANKRD26Q9UPS8 1709 aa12.38□□□□□ -0.43
SMG6-210ENST00000572205 SOCS7O14512 581 aa12.38□□□□□ -0.43
SMG6-210ENST00000572205 SRPK2P78362 688 aaKnown RBP12.38□□□□□ -0.43
SMG6-210ENST00000572205 A0A1W2PP64 1363 aa12.38□□□□□ -0.43
SMG6-210ENST00000572205 CAMTA1Q9Y6Y1 1673 aa12.38□□□□□ -0.43
SMG6-210ENST00000572205 ABCC6O95255 1503 aa12.37□□□□□ -0.43
SMG6-210ENST00000572205 ST20-MTHFSA0A0A6YYL1 179 aa12.37□□□□□ -0.43
SMG6-210ENST00000572205 PSME1Q06323 249 aa12.37□□□□□ -0.43
SMG6-210ENST00000572205 OVOS2A0A0J9YW53 1432 aa12.37□□□□□ -0.43
SMG6-210ENST00000572205 OVOS2Q6IE36 1432 aa12.37□□□□□ -0.43
SMG6-210ENST00000572205 CPDO75976 1380 aa12.36□□□□□ -0.43
SMG6-210ENST00000572205 NGDNQ8NEJ9 315 aaKnown RBP12.36□□□□□ -0.43
SMG6-210ENST00000572205 CABP1Q9NZU7 370 aa12.36□□□□□ -0.43
SMG6-210ENST00000572205 MEX3CQ5U5Q3 659 aaKnown RBP12.35□□□□□ -0.43
SMG6-210ENST00000572205 ZNF772Q68DY9 489 aaPredicted RBP12.35□□□□□ -0.43
SMG6-210ENST00000572205 U3KPZ7 1027 aaPredicted RBP12.35□□□□□ -0.43
SMG6-210ENST00000572205 PARP4Q9UKK3 1724 aaKnown RBP12.34□□□□□ -0.43
SMG6-210ENST00000572205 KIAA0232Q92628 1395 aa12.34□□□□□ -0.43
SMG6-210ENST00000572205 DCAF8L1A6NGE4 600 aa12.34□□□□□ -0.43
SMG6-210ENST00000572205 SAMD1Q6SPF0 538 aaPredicted RBP12.34□□□□□ -0.43
SMG6-210ENST00000572205 PUS7Q96PZ0 661 aaKnown RBP12.34□□□□□ -0.43
SMG6-210ENST00000572205 EDC4Q6P2E9 1401 aaKnown RBP12.34□□□□□ -0.43
SMG6-210ENST00000572205 COL5A2P05997 1499 aaPredicted RBP12.34□□□□□ -0.43
SMG6-210ENST00000572205 LRRC37A3O60309 1634 aa12.33□□□□□ -0.43
SMG6-210ENST00000572205 USP31Q70CQ4 1352 aa12.33□□□□□ -0.44
SMG6-210ENST00000572205 NINLQ9Y2I6 1382 aa12.33□□□□□ -0.44
SMG6-210ENST00000572205 CCER1Q8TC90 406 aaPredicted RBP12.33□□□□□ -0.44
SMG6-210ENST00000572205 PEAK1Q9H792 1746 aa12.33□□□□□ -0.44
SMG6-210ENST00000572205 TNS1Q9HBL0 1735 aaKnown RBP12.32□□□□□ -0.44
SMG6-210ENST00000572205 FAM83GA6ND36 823 aa12.32□□□□□ -0.44
SMG6-210ENST00000572205 TTC21BQ7Z4L5 1316 aa12.32□□□□□ -0.44
SMG6-210ENST00000572205 KTN1Q86UP2 1357 aaKnown RBP12.31□□□□□ -0.44
SMG6-210ENST00000572205 NGLY1Q96IV0 654 aa12.31□□□□□ -0.44
SMG6-210ENST00000572205 USP21Q9UK80 565 aa12.31□□□□□ -0.44
SMG6-210ENST00000572205 FAM208AQ9UK61 1670 aaKnown RBP12.31□□□□□ -0.44
SMG6-210ENST00000572205 ANKRD36BQ8N2N9 1353 aa12.3□□□□□ -0.44
SMG6-210ENST00000572205 RGPD2P0DJD1 1756 aa12.3□□□□□ -0.44
SMG6-210ENST00000572205 NUTM2GQ5VZR2 741 aa12.3□□□□□ -0.44
SMG6-210ENST00000572205 SHANK3Q9BYB0 1731 aa12.29□□□□□ -0.44
SMG6-210ENST00000572205 RBM6P78332 1123 aaKnown RBP12.29□□□□□ -0.44
SMG6-210ENST00000572205 UNC5CLQ8IV45 518 aa12.29□□□□□ -0.44
SMG6-210ENST00000572205 SLC12A5Q9H2X9 1139 aa12.29□□□□□ -0.44
SMG6-210ENST00000572205 QTRT2Q9H974 415 aaKnown RBP12.29□□□□□ -0.44
SMG6-210ENST00000572205 TTC21AQ8NDW8 1320 aa12.29□□□□□ -0.44
SMG6-210ENST00000572205 PAK3O75914 559 aaPredicted RBP12.28□□□□□ -0.44
SMG6-210ENST00000572205 LMOD2Q6P5Q4 547 aa12.28□□□□□ -0.44
SMG6-210ENST00000572205 TRPC5Q9UL62 973 aaPredicted RBP12.28□□□□□ -0.44
SMG6-210ENST00000572205 RXRBP28702 533 aa12.27□□□□□ -0.45
SMG6-210ENST00000572205 VPS72Q15906 364 aa12.27□□□□□ -0.45
SMG6-210ENST00000572205 ZRANB1Q9UGI0 708 aa12.27□□□□□ -0.45
SMG6-210ENST00000572205 SBF2Q86WG5 1849 aa12.27□□□□□ -0.45
SMG6-210ENST00000572205 ABTB2Q8N961 1025 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms