RNA–Protein interactions for RNA: ENST00000571263.2

CDRT1-206, CMT1A duplicated region transcript 1, humanhuman

TSL 1 (best)

Gene CDRT1, Length 800 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDRT1-206ENST00000571263 SSH2Q76I76 1423 aa16.14■□□□□ 0.17
CDRT1-206ENST00000571263 ORAI2Q96SN7 254 aa16.14■□□□□ 0.17
CDRT1-206ENST00000571263 NPHP3Q7Z494 1330 aa16.14■□□□□ 0.17
CDRT1-206ENST00000571263 NLRP13Q86W25 1043 aa16.13■□□□□ 0.17
CDRT1-206ENST00000571263 SCAF1Q9H7N4 1312 aaKnown RBP16.13■□□□□ 0.17
CDRT1-206ENST00000571263 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.12■□□□□ 0.17
CDRT1-206ENST00000571263 COG3Q96JB2 828 aa16.12■□□□□ 0.17
CDRT1-206ENST00000571263 TOM1O60784 492 aa16.11■□□□□ 0.17
CDRT1-206ENST00000571263 FOXO3O43524 673 aa16.1■□□□□ 0.17
CDRT1-206ENST00000571263 KRT28Q7Z3Y7 464 aa16.1■□□□□ 0.17
CDRT1-206ENST00000571263 GGNBP2Q9H3C7 697 aa16.1■□□□□ 0.17
CDRT1-206ENST00000571263 USP31Q70CQ4 1352 aa16.1■□□□□ 0.17
CDRT1-206ENST00000571263 CNGB1Q14028 1251 aaPredicted RBP16.09■□□□□ 0.17
CDRT1-206ENST00000571263 KIF20BQ96Q89 1820 aa16.09■□□□□ 0.17
CDRT1-206ENST00000571263 NRKQ7Z2Y5 1582 aa16.09■□□□□ 0.17
CDRT1-206ENST00000571263 ANKRD26Q9UPS8 1709 aa16.08■□□□□ 0.17
CDRT1-206ENST00000571263 PPP2R1AP30153 589 aa16.08■□□□□ 0.16
CDRT1-206ENST00000571263 BRINP3Q76B58 766 aa16.08■□□□□ 0.16
CDRT1-206ENST00000571263 SBNO1A3KN83 1393 aa16.08■□□□□ 0.16
CDRT1-206ENST00000571263 PAK3O75914 559 aaPredicted RBP16.07■□□□□ 0.16
CDRT1-206ENST00000571263 NME9Q86XW9 330 aa16.07■□□□□ 0.16
CDRT1-206ENST00000571263 ABTB2Q8N961 1025 aa16.07■□□□□ 0.16
CDRT1-206ENST00000571263 AATKQ6ZMQ8 1374 aa16.06■□□□□ 0.16
CDRT1-206ENST00000571263 MRS2Q9HD23 443 aa16.06■□□□□ 0.16
CDRT1-206ENST00000571263 NLRP6P59044 892 aa16.05■□□□□ 0.16
CDRT1-206ENST00000571263 CFAP53Q96M91 514 aa16.05■□□□□ 0.16
CDRT1-206ENST00000571263 KCNH5Q8NCM2 988 aa16.04■□□□□ 0.16
CDRT1-206ENST00000571263 CERKQ8TCT0 537 aa16.04■□□□□ 0.16
CDRT1-206ENST00000571263 OVOS2A0A0J9YW53 1432 aa16.03■□□□□ 0.16
CDRT1-206ENST00000571263 OVOS2Q6IE36 1432 aa16.03■□□□□ 0.16
CDRT1-206ENST00000571263 SOS2Q07890 1332 aaPredicted RBP16.03■□□□□ 0.16
CDRT1-206ENST00000571263 ARHGEF10O15013 1369 aa16.02■□□□□ 0.16
CDRT1-206ENST00000571263 USP54Q70EL1 1684 aa16.02■□□□□ 0.15
CDRT1-206ENST00000571263 SPATA31A3Q5VYP0 1347 aa16■□□□□ 0.15
CDRT1-206ENST00000571263 PXDNQ92626 1479 aa16■□□□□ 0.15
CDRT1-206ENST00000571263 KIF24Q5T7B8 1368 aa16■□□□□ 0.15
CDRT1-206ENST00000571263 TRPM3Q9HCF6 1732 aaPredicted RBP15.99■□□□□ 0.15
CDRT1-206ENST00000571263 UBAP1LF5GYI3 381 aa15.99■□□□□ 0.15
CDRT1-206ENST00000571263 TNNT2P45379 298 aaPredicted RBP15.99■□□□□ 0.15
CDRT1-206ENST00000571263 MTHFSP49914 203 aa15.99■□□□□ 0.15
CDRT1-206ENST00000571263 LRRC59Q96AG4 307 aaKnown RBP15.99■□□□□ 0.15
CDRT1-206ENST00000571263 TNS3Q68CZ2 1445 aa15.99■□□□□ 0.15
CDRT1-206ENST00000571263 PIK3C2AO00443 1686 aa15.99■□□□□ 0.15
CDRT1-206ENST00000571263 PNISRQ8TF01 805 aaKnown RBP15.98■□□□□ 0.15
CDRT1-206ENST00000571263 ZRANB1Q9UGI0 708 aa15.98■□□□□ 0.15
CDRT1-206ENST00000571263 INSRP06213 1382 aa15.98■□□□□ 0.15
CDRT1-206ENST00000571263 NHSL1Q5SYE7 1610 aa15.97■□□□□ 0.15
CDRT1-206ENST00000571263 XPCQ01831 940 aaPredicted RBP15.97■□□□□ 0.15
CDRT1-206ENST00000571263 LMOD2Q6P5Q4 547 aa15.97■□□□□ 0.15
CDRT1-206ENST00000571263 POLKQ9UBT6 870 aa15.97■□□□□ 0.15
CDRT1-206ENST00000571263 NUDCQ9Y266 331 aa15.97■□□□□ 0.15
CDRT1-206ENST00000571263 AHDC1Q5TGY3 1603 aaPredicted RBP15.96■□□□□ 0.15
CDRT1-206ENST00000571263 ALS2Q96Q42 1657 aa15.95■□□□□ 0.14
CDRT1-206ENST00000571263 ROBO1Q9Y6N7 1651 aa15.95■□□□□ 0.14
CDRT1-206ENST00000571263 USP19O94966 1318 aa15.95■□□□□ 0.14
CDRT1-206ENST00000571263 SMG6Q86US8 1419 aaKnown RBP15.95■□□□□ 0.14
CDRT1-206ENST00000571263 WDR43Q15061 677 aaKnown RBP eCLIP15.95■□□□□ 0.14
CDRT1-206ENST00000571263 PNPLA6Q8IY17 1366 aa15.95■□□□□ 0.14
CDRT1-206ENST00000571263 GCP02774 474 aa15.94■□□□□ 0.14
CDRT1-206ENST00000571263 CCDC184Q52MB2 194 aa15.94■□□□□ 0.14
CDRT1-206ENST00000571263 DDX17Q92841 729 aaKnown RBP15.94■□□□□ 0.14
CDRT1-206ENST00000571263 NUTM2GQ5VZR2 741 aa15.93■□□□□ 0.14
CDRT1-206ENST00000571263 SLIT3O75094 1523 aa15.93■□□□□ 0.14
CDRT1-206ENST00000571263 CDK12Q9NYV4 1490 aaPredicted RBP15.92■□□□□ 0.14
CDRT1-206ENST00000571263 DIAPH1O60610 1272 aaKnown RBP15.92■□□□□ 0.14
CDRT1-206ENST00000571263 AMPHP49418 695 aa15.92■□□□□ 0.14
CDRT1-206ENST00000571263 FAM9BQ8IZU0 186 aa15.92■□□□□ 0.14
CDRT1-206ENST00000571263 PNNQ9H307 717 aaKnown RBP15.92■□□□□ 0.14
CDRT1-206ENST00000571263 RTL1A6NKG5 1358 aa15.91■□□□□ 0.14
CDRT1-206ENST00000571263 FLT4P35916 1363 aa15.91■□□□□ 0.14
CDRT1-206ENST00000571263 PPM1GO15355 546 aaPredicted RBP15.91■□□□□ 0.14
CDRT1-206ENST00000571263 MAP2P11137 1827 aaKnown RBP15.91■□□□□ 0.14
CDRT1-206ENST00000571263 PIP4K2BP78356 416 aa15.9■□□□□ 0.14
CDRT1-206ENST00000571263 RRS1Q15050 365 aaKnown RBP15.9■□□□□ 0.14
CDRT1-206ENST00000571263 EMILIN1Q9Y6C2 1016 aa15.9■□□□□ 0.14
CDRT1-206ENST00000571263 MED1Q15648 1581 aaPredicted RBP15.9■□□□□ 0.14
CDRT1-206ENST00000571263 MAP3K19Q56UN5 1328 aa15.9■□□□□ 0.14
CDRT1-206ENST00000571263 MARF1Q9Y4F3 1742 aaKnown RBP15.88■□□□□ 0.13
CDRT1-206ENST00000571263 ARHGEF25Q86VW2 580 aa15.88■□□□□ 0.13
CDRT1-206ENST00000571263 IP6K1Q92551 441 aa15.88■□□□□ 0.13
CDRT1-206ENST00000571263 NFAT5O94916 1531 aa15.88■□□□□ 0.13
CDRT1-206ENST00000571263 SOX12O15370 315 aa15.87■□□□□ 0.13
CDRT1-206ENST00000571263 HAP1P54257 671 aaPredicted RBP15.87■□□□□ 0.13
CDRT1-206ENST00000571263 CPDO75976 1380 aa15.87■□□□□ 0.13
CDRT1-206ENST00000571263 FBLN1P23142 703 aa15.86■□□□□ 0.13
CDRT1-206ENST00000571263 HOXC9P31274 260 aa15.86■□□□□ 0.13
CDRT1-206ENST00000571263 NGEFQ8N5V2 710 aa15.86■□□□□ 0.13
CDRT1-206ENST00000571263 PHRF1Q9P1Y6 1649 aaKnown RBP15.86■□□□□ 0.13
CDRT1-206ENST00000571263 PHLPP1O60346 1717 aa15.85■□□□□ 0.13
CDRT1-206ENST00000571263 COL3A1P02461 1466 aaPredicted RBP15.85■□□□□ 0.13
CDRT1-206ENST00000571263 ABCC6O95255 1503 aa15.85■□□□□ 0.13
CDRT1-206ENST00000571263 ADAMTS8Q9UP79 889 aa15.85■□□□□ 0.13
CDRT1-206ENST00000571263 BLMP54132 1417 aaPredicted RBP15.85■□□□□ 0.13
CDRT1-206ENST00000571263 U2AF1L5P0DN76 240 aaPredicted RBP15.84■□□□□ 0.13
CDRT1-206ENST00000571263 IL13P35225 146 aa15.84■□□□□ 0.13
CDRT1-206ENST00000571263 U2AF1Q01081 240 aaKnown RBP eCLIP15.84■□□□□ 0.13
CDRT1-206ENST00000571263 U2SURPO15042 1029 aaKnown RBP15.83■□□□□ 0.12
CDRT1-206ENST00000571263 FCHSD2O94868 740 aa15.83■□□□□ 0.12
CDRT1-206ENST00000571263 NEFMP07197 916 aa15.83■□□□□ 0.12
CDRT1-206ENST00000571263 HSP90AB2PQ58FF8 381 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms