RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 UBAP1LF5GYI3 381 aa9.02□□□□□ -0.97
VPS53-209ENST00000570771 EIF4G2P78344 907 aaKnown RBP eCLIP9.02□□□□□ -0.97
VPS53-209ENST00000570771 PIP4K2BP78356 416 aa9.01□□□□□ -0.97
VPS53-209ENST00000570771 PXDNQ92626 1479 aa9.01□□□□□ -0.97
VPS53-209ENST00000570771 KIF7Q2M1P5 1343 aa9.01□□□□□ -0.97
VPS53-209ENST00000570771 WASHC2AQ641Q2 1341 aa9.01□□□□□ -0.97
VPS53-209ENST00000570771 ANKARQ7Z5J8 1434 aa9□□□□□ -0.97
VPS53-209ENST00000570771 XPCQ01831 940 aaPredicted RBP9□□□□□ -0.97
VPS53-209ENST00000570771 NUDT16Q96DE0 195 aaKnown RBP9□□□□□ -0.97
VPS53-209ENST00000570771 SLAIN2Q9P270 581 aa9□□□□□ -0.97
VPS53-209ENST00000570771 FARP1Q9Y4F1 1045 aaPredicted RBP9□□□□□ -0.97
VPS53-209ENST00000570771 PPIP5K1Q6PFW1 1433 aa8.99□□□□□ -0.97
VPS53-209ENST00000570771 COL16A1Q07092 1604 aaPredicted RBP8.99□□□□□ -0.97
VPS53-209ENST00000570771 NHSL1Q5SYE7 1610 aa8.99□□□□□ -0.97
VPS53-209ENST00000570771 ZNF316A6NFI3 1004 aaPredicted RBP8.99□□□□□ -0.97
VPS53-209ENST00000570771 POTEB2H3BUK9 544 aa8.99□□□□□ -0.97
VPS53-209ENST00000570771 SLC24A1O60721 1099 aa8.99□□□□□ -0.97
VPS53-209ENST00000570771 ZNF579Q8NAF0 562 aaKnown RBP8.99□□□□□ -0.97
VPS53-209ENST00000570771 PMFBP1Q8TBY8 1022 aa8.99□□□□□ -0.97
VPS53-209ENST00000570771 NRKQ7Z2Y5 1582 aa8.99□□□□□ -0.97
VPS53-209ENST00000570771 AHDC1Q5TGY3 1603 aaPredicted RBP8.98□□□□□ -0.97
VPS53-209ENST00000570771 ATF3P18847 181 aa8.98□□□□□ -0.97
VPS53-209ENST00000570771 MKRN4PQ13434 485 aaPredicted RBP8.98□□□□□ -0.97
VPS53-209ENST00000570771 CADPS2Q86UW7 1296 aa8.98□□□□□ -0.97
VPS53-209ENST00000570771 SLC12A5Q9H2X9 1139 aa8.98□□□□□ -0.97
VPS53-209ENST00000570771 A0A1W2PP64 1363 aa8.98□□□□□ -0.97
VPS53-209ENST00000570771 CCDC7Q96M83 1385 aa8.98□□□□□ -0.97
VPS53-209ENST00000570771 CPSF1Q10570 1443 aaKnown RBP8.97□□□□□ -0.97
VPS53-209ENST00000570771 SSH2Q76I76 1423 aa8.97□□□□□ -0.97
VPS53-209ENST00000570771 TRPM3Q9HCF6 1732 aaPredicted RBP8.97□□□□□ -0.97
VPS53-209ENST00000570771 HSPA1LP34931 641 aa8.97□□□□□ -0.97
VPS53-209ENST00000570771 SRPK2P78362 688 aaKnown RBP8.97□□□□□ -0.97
VPS53-209ENST00000570771 ESCO1Q5FWF5 840 aa8.97□□□□□ -0.97
VPS53-209ENST00000570771 CABP1Q9NZU7 370 aa8.97□□□□□ -0.97
VPS53-209ENST00000570771 EVC2Q86UK5 1308 aa8.97□□□□□ -0.97
VPS53-209ENST00000570771 POLR3AO14802 1390 aaPredicted RBP8.97□□□□□ -0.97
VPS53-209ENST00000570771 FOXO3O43524 673 aa8.96□□□□□ -0.98
VPS53-209ENST00000570771 ATXN8OSP0DMR3 200 aa8.96□□□□□ -0.98
VPS53-209ENST00000570771 PHF8Q9UPP1 1060 aa8.96□□□□□ -0.98
VPS53-209ENST00000570771 CARD14Q9BXL6 1004 aa8.95□□□□□ -0.98
VPS53-209ENST00000570771 ZRANB1Q9UGI0 708 aa8.95□□□□□ -0.98
VPS53-209ENST00000570771 ACEP12821 1306 aa8.95□□□□□ -0.98
VPS53-209ENST00000570771 KIF1AQ12756 1690 aa8.94□□□□□ -0.98
VPS53-209ENST00000570771 MARF1Q9Y4F3 1742 aaKnown RBP8.94□□□□□ -0.98
VPS53-209ENST00000570771 PLEKHG3A1L390 1219 aa8.94□□□□□ -0.98
VPS53-209ENST00000570771 ILDR1Q86SU0 546 aaPredicted RBP8.94□□□□□ -0.98
VPS53-209ENST00000570771 SOS2Q07890 1332 aaPredicted RBP8.94□□□□□ -0.98
VPS53-209ENST00000570771 ATAD2Q6PL18 1390 aa8.94□□□□□ -0.98
VPS53-209ENST00000570771 USP6P35125 1406 aa8.94□□□□□ -0.98
VPS53-209ENST00000570771 MED1Q15648 1581 aaPredicted RBP8.94□□□□□ -0.98
VPS53-209ENST00000570771 LRP6O75581 1613 aa8.94□□□□□ -0.98
VPS53-209ENST00000570771 PIK3C2AO00443 1686 aa8.94□□□□□ -0.98
VPS53-209ENST00000570771 MON2Q7Z3U7 1717 aa8.94□□□□□ -0.98
VPS53-209ENST00000570771 TOM1O60784 492 aa8.93□□□□□ -0.98
VPS53-209ENST00000570771 TMF1P82094 1093 aa8.93□□□□□ -0.98
VPS53-209ENST00000570771 FBXO41Q8TF61 875 aa8.93□□□□□ -0.98
VPS53-209ENST00000570771 POLR3GLQ9BT43 218 aa8.93□□□□□ -0.98
VPS53-209ENST00000570771 CCDC61Q9Y6R9 512 aa8.93□□□□□ -0.98
VPS53-209ENST00000570771 ALS2Q96Q42 1657 aa8.93□□□□□ -0.98
VPS53-209ENST00000570771 ITSN1Q15811 1721 aa8.93□□□□□ -0.98
VPS53-209ENST00000570771 AKAP12Q02952 1782 aa8.93□□□□□ -0.98
VPS53-209ENST00000570771 PHLPP1O60346 1717 aa8.92□□□□□ -0.98
VPS53-209ENST00000570771 CRYBG1Q9Y4K1 1723 aa8.92□□□□□ -0.98
VPS53-209ENST00000570771 PNPLA6Q8IY17 1366 aa8.92□□□□□ -0.98
VPS53-209ENST00000570771 CDCA8Q53HL2 280 aa8.92□□□□□ -0.98
VPS53-209ENST00000570771 TNS3Q68CZ2 1445 aa8.91□□□□□ -0.98
VPS53-209ENST00000570771 NSD3Q9BZ95 1437 aa8.91□□□□□ -0.98
VPS53-209ENST00000570771 ANKRD36BQ8N2N9 1353 aa8.91□□□□□ -0.98
VPS53-209ENST00000570771 TMC1Q8TDI8 760 aa8.91□□□□□ -0.98
VPS53-209ENST00000570771 SPATA31A3Q5VYP0 1347 aa8.9□□□□□ -0.98
VPS53-209ENST00000570771 NUTM2GQ5VZR2 741 aa8.9□□□□□ -0.98
VPS53-209ENST00000570771 KRT28Q7Z3Y7 464 aa8.9□□□□□ -0.98
VPS53-209ENST00000570771 NME9Q86XW9 330 aa8.9□□□□□ -0.98
VPS53-209ENST00000570771 ABCA3Q99758 1704 aa8.9□□□□□ -0.98
VPS53-209ENST00000570771 OVOS2A0A0J9YW53 1432 aa8.89□□□□□ -0.99
VPS53-209ENST00000570771 OVOS2Q6IE36 1432 aa8.89□□□□□ -0.99
VPS53-209ENST00000570771 KTN1Q86UP2 1357 aaKnown RBP8.89□□□□□ -0.99
VPS53-209ENST00000570771 TTC21BQ7Z4L5 1316 aa8.89□□□□□ -0.99
VPS53-209ENST00000570771 GALR2O43603 387 aaPredicted RBP8.89□□□□□ -0.99
VPS53-209ENST00000570771 PLEKHG5O94827 1062 aa8.89□□□□□ -0.99
VPS53-209ENST00000570771 FBLN1P23142 703 aa8.89□□□□□ -0.99
VPS53-209ENST00000570771 NGDNQ8NEJ9 315 aaKnown RBP8.89□□□□□ -0.99
VPS53-209ENST00000570771 CABLES1Q8TDN4 633 aa8.89□□□□□ -0.99
VPS53-209ENST00000570771 PUS7Q96PZ0 661 aaKnown RBP8.89□□□□□ -0.99
VPS53-209ENST00000570771 PANK3Q9H999 370 aa8.89□□□□□ -0.99
VPS53-209ENST00000570771 EDC4Q6P2E9 1401 aaKnown RBP8.88□□□□□ -0.99
VPS53-209ENST00000570771 SBNO1A3KN83 1393 aa8.88□□□□□ -0.99
VPS53-209ENST00000570771 COL22A1Q8NFW1 1626 aaPredicted RBP8.88□□□□□ -0.99
VPS53-209ENST00000570771 NPHP3Q7Z494 1330 aa8.88□□□□□ -0.99
VPS53-209ENST00000570771 PER1O15534 1290 aaPredicted RBP8.88□□□□□ -0.99
VPS53-209ENST00000570771 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.88□□□□□ -0.99
VPS53-209ENST00000570771 PHRF1Q9P1Y6 1649 aaKnown RBP8.87□□□□□ -0.99
VPS53-209ENST00000570771 SLIT3O75094 1523 aa8.87□□□□□ -0.99
VPS53-209ENST00000570771 NFAT5O94916 1531 aa8.87□□□□□ -0.99
VPS53-209ENST00000570771 SHPRHQ149N8 1683 aa8.87□□□□□ -0.99
VPS53-209ENST00000570771 NINLQ9Y2I6 1382 aa8.86□□□□□ -0.99
VPS53-209ENST00000570771 USP19O94966 1318 aa8.86□□□□□ -0.99
VPS53-209ENST00000570771 USP54Q70EL1 1684 aa8.86□□□□□ -0.99
VPS53-209ENST00000570771 AMER1Q5JTC6 1135 aaPredicted RBP8.86□□□□□ -0.99
VPS53-209ENST00000570771 GGNBP2Q9H3C7 697 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms