RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 TMEM132EQ6IEE7 984 aa10.82□□□□□ -0.68
VPS39-213ENST00000570062 TXNDC2Q86VQ3 553 aa10.82□□□□□ -0.68
VPS39-213ENST00000570062 YTHDC2Q9H6S0 1430 aaKnown RBP10.82□□□□□ -0.68
VPS39-213ENST00000570062 ADAMTSL3P82987 1691 aa10.82□□□□□ -0.68
VPS39-213ENST00000570062 PER1O15534 1290 aaPredicted RBP10.81□□□□□ -0.68
VPS39-213ENST00000570062 NUTM2DQ5VT03 806 aaPredicted RBP10.81□□□□□ -0.68
VPS39-213ENST00000570062 IFNLR1Q8IU57 520 aaPredicted RBP10.81□□□□□ -0.68
VPS39-213ENST00000570062 CDAN1Q8IWY9 1227 aa10.81□□□□□ -0.68
VPS39-213ENST00000570062 SPOCK2Q92563 424 aa10.81□□□□□ -0.68
VPS39-213ENST00000570062 BCANQ96GW7 911 aa10.81□□□□□ -0.68
VPS39-213ENST00000570062 PANK3Q9H999 370 aa10.81□□□□□ -0.68
VPS39-213ENST00000570062 TBX22Q9Y458 520 aa10.81□□□□□ -0.68
VPS39-213ENST00000570062 MYO3AQ8NEV4 1616 aa10.8□□□□□ -0.68
VPS39-213ENST00000570062 DLC1Q96QB1 1528 aa10.8□□□□□ -0.68
VPS39-213ENST00000570062 CEBPAP49715 358 aaPredicted RBP10.8□□□□□ -0.68
VPS39-213ENST00000570062 PDCD7Q8N8D1 485 aaKnown RBP10.8□□□□□ -0.68
VPS39-213ENST00000570062 CIZ1Q9ULV3 898 aaPredicted RBP10.8□□□□□ -0.68
VPS39-213ENST00000570062 MYBBP1AQ9BQG0 1328 aaKnown RBP10.8□□□□□ -0.68
VPS39-213ENST00000570062 ALKQ9UM73 1620 aa10.8□□□□□ -0.68
VPS39-213ENST00000570062 SLIT1O75093 1534 aa10.79□□□□□ -0.68
VPS39-213ENST00000570062 ATAD2Q6PL18 1390 aa10.79□□□□□ -0.68
VPS39-213ENST00000570062 FAM135BQ49AJ0 1406 aa10.79□□□□□ -0.68
VPS39-213ENST00000570062 HSPA2P54652 639 aa10.79□□□□□ -0.68
VPS39-213ENST00000570062 CFAP65Q6ZU64 1925 aaKnown RBP10.79□□□□□ -0.68
VPS39-213ENST00000570062 PIK3R4Q99570 1358 aa10.78□□□□□ -0.68
VPS39-213ENST00000570062 SNPHO15079 494 aa10.78□□□□□ -0.68
VPS39-213ENST00000570062 NLRP13Q86W25 1043 aa10.78□□□□□ -0.68
VPS39-213ENST00000570062 ANKLE2Q86XL3 938 aa10.78□□□□□ -0.68
VPS39-213ENST00000570062 STK26Q9P289 416 aa10.78□□□□□ -0.68
VPS39-213ENST00000570062 ARHGAP23Q9P227 1491 aa10.78□□□□□ -0.68
VPS39-213ENST00000570062 BRD4O60885 1362 aaPredicted RBP10.77□□□□□ -0.68
VPS39-213ENST00000570062 FER1L4A9Z1Z3 1794 aa10.77□□□□□ -0.68
VPS39-213ENST00000570062 TMC1Q8TDI8 760 aa10.77□□□□□ -0.69
VPS39-213ENST00000570062 L3MBTL3Q96JM7 780 aaPredicted RBP10.77□□□□□ -0.69
VPS39-213ENST00000570062 PRAM1Q96QH2 718 aa10.77□□□□□ -0.69
VPS39-213ENST00000570062 MRS2Q9HD23 443 aa10.77□□□□□ -0.69
VPS39-213ENST00000570062 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.77□□□□□ -0.697e-7■■■■□ 19.6
VPS39-213ENST00000570062 TECPR2O15040 1411 aa10.76□□□□□ -0.69
VPS39-213ENST00000570062 PDAP1Q13442 181 aaKnown RBP10.76□□□□□ -0.69
VPS39-213ENST00000570062 TERF2IPQ9NYB0 399 aa10.76□□□□□ -0.69
VPS39-213ENST00000570062 C3P01024 1663 aa10.76□□□□□ -0.69
VPS39-213ENST00000570062 C3orf67Q6ZVT6 689 aa10.75□□□□□ -0.69
VPS39-213ENST00000570062 YTHDC1Q96MU7 727 aaKnown RBP10.75□□□□□ -0.69
VPS39-213ENST00000570062 PARD3Q8TEW0 1356 aa10.75□□□□□ -0.69
VPS39-213ENST00000570062 LTKP29376 864 aa10.74□□□□□ -0.69
VPS39-213ENST00000570062 SRPK2P78362 688 aaKnown RBP10.74□□□□□ -0.69
VPS39-213ENST00000570062 UBR1Q8IWV7 1749 aa10.74□□□□□ -0.69
VPS39-213ENST00000570062 NSD2O96028 1365 aa10.74□□□□□ -0.69
VPS39-213ENST00000570062 INSRP06213 1382 aa10.74□□□□□ -0.69
VPS39-213ENST00000570062 DIP2AQ14689 1571 aa10.73□□□□□ -0.69
VPS39-213ENST00000570062 HDGFL2Q7Z4V5 671 aaPredicted RBP10.73□□□□□ -0.69
VPS39-213ENST00000570062 TMEM121BQ9BXQ6 578 aaPredicted RBP10.73□□□□□ -0.69
VPS39-213ENST00000570062 CGNL1Q0VF96 1302 aa10.73□□□□□ -0.69
VPS39-213ENST00000570062 AMER1Q5JTC6 1135 aaPredicted RBP10.72□□□□□ -0.69
VPS39-213ENST00000570062 METP08581 1390 aa10.72□□□□□ -0.69
VPS39-213ENST00000570062 ANKRD36BQ8N2N9 1353 aa10.72□□□□□ -0.69
VPS39-213ENST00000570062 MED14O60244 1454 aa10.72□□□□□ -0.69
VPS39-213ENST00000570062 WASLO00401 505 aaPredicted RBP10.71□□□□□ -0.69
VPS39-213ENST00000570062 ADAMTS13Q76LX8 1427 aa10.71□□□□□ -0.69
VPS39-213ENST00000570062 RIMS1Q86UR5 1692 aaKnown RBP10.71□□□□□ -0.69
VPS39-213ENST00000570062 ASXL1Q8IXJ9 1541 aa10.71□□□□□ -0.69
VPS39-213ENST00000570062 CDK19Q9BWU1 502 aa10.71□□□□□ -0.69
VPS39-213ENST00000570062 CEP170BQ9Y4F5 1589 aaPredicted RBP10.71□□□□□ -0.69
VPS39-213ENST00000570062 MINK1Q8N4C8 1332 aaPredicted RBP10.7□□□□□ -0.7
VPS39-213ENST00000570062 SETD1BQ9UPS6 1966 aaKnown RBP10.69□□□□□ -0.7
VPS39-213ENST00000570062 CC2D1BQ5T0F9 858 aaKnown RBP10.69□□□□□ -0.7
VPS39-213ENST00000570062 PNISRQ8TF01 805 aaKnown RBP10.69□□□□□ -0.7
VPS39-213ENST00000570062 SLC12A5Q9H2X9 1139 aa10.69□□□□□ -0.7
VPS39-213ENST00000570062 CABP2Q9NPB3 220 aa10.69□□□□□ -0.7
VPS39-213ENST00000570062 AMOTL2Q9Y2J4 779 aa10.69□□□□□ -0.7
VPS39-213ENST00000570062 QRICH2Q9H0J4 1663 aa10.69□□□□□ -0.7
VPS39-213ENST00000570062 PTCH1Q13635 1447 aa10.68□□□□□ -0.7
VPS39-213ENST00000570062 MYO5BQ9ULV0 1848 aa10.68□□□□□ -0.7
VPS39-213ENST00000570062 ARHGEF28Q8N1W1 1705 aaKnown RBP10.68□□□□□ -0.7
VPS39-213ENST00000570062 CPS1P31327 1500 aa10.68□□□□□ -0.7
VPS39-213ENST00000570062 SAFB2Q14151 953 aaKnown RBP eCLIP10.67□□□□□ -0.7
VPS39-213ENST00000570062 WAPLQ7Z5K2 1190 aa10.67□□□□□ -0.7
VPS39-213ENST00000570062 FAM9BQ8IZU0 186 aa10.67□□□□□ -0.7
VPS39-213ENST00000570062 NGEFQ8N5V2 710 aa10.67□□□□□ -0.7
VPS39-213ENST00000570062 SLC26A8Q96RN1 970 aa10.67□□□□□ -0.7
VPS39-213ENST00000570062 CARD14Q9BXL6 1004 aa10.67□□□□□ -0.7
VPS39-213ENST00000570062 PPP2R1AP30153 589 aa10.66□□□□□ -0.7
VPS39-213ENST00000570062 HNRNPUQ00839 825 aaKnown RBP eCLIP10.66□□□□□ -0.7
VPS39-213ENST00000570062 MORC1Q86VD1 984 aa10.66□□□□□ -0.7
VPS39-213ENST00000570062 MARVELD3Q96A59 401 aa10.66□□□□□ -0.7
VPS39-213ENST00000570062 TULP4Q9NRJ4 1543 aa10.66□□□□□ -0.7
VPS39-213ENST00000570062 KNDC1Q76NI1 1749 aa10.66□□□□□ -0.7
VPS39-213ENST00000570062 NRXN3Q9Y4C0 1643 aa10.66□□□□□ -0.7
VPS39-213ENST00000570062 MED1Q15648 1581 aaPredicted RBP10.65□□□□□ -0.7
VPS39-213ENST00000570062 DPY19L2Q6NUT2 758 aa10.65□□□□□ -0.7
VPS39-213ENST00000570062 CFAP53Q96M91 514 aa10.65□□□□□ -0.7
VPS39-213ENST00000570062 ATP7BP35670 1465 aa10.65□□□□□ -0.7
VPS39-213ENST00000570062 ZNF142P52746 1687 aaPredicted RBP10.65□□□□□ -0.7
VPS39-213ENST00000570062 NSD3Q9BZ95 1437 aa10.65□□□□□ -0.7
VPS39-213ENST00000570062 ZBED9Q6R2W3 1325 aa10.64□□□□□ -0.71
VPS39-213ENST00000570062 PLEKHG3A1L390 1219 aa10.64□□□□□ -0.71
VPS39-213ENST00000570062 WDR43Q15061 677 aaKnown RBP eCLIP10.64□□□□□ -0.71
VPS39-213ENST00000570062 NUDT16Q96DE0 195 aaKnown RBP10.64□□□□□ -0.71
VPS39-213ENST00000570062 CABP1Q9NZU7 370 aa10.64□□□□□ -0.71
VPS39-213ENST00000570062 SETD1AO15047 1707 aaKnown RBP10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms