RNA–Protein interactions for RNA: ENST00000569394.5

GTF3C1-210, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 3

Gene GTF3C1, Length 566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-210ENST00000569394 ST20-MTHFSA0A0A6YYL1 179 aa12.74□□□□□ -0.37
GTF3C1-210ENST00000569394 TMC1Q8TDI8 760 aa12.74□□□□□ -0.37
GTF3C1-210ENST00000569394 TNS3Q68CZ2 1445 aa12.73□□□□□ -0.37
GTF3C1-210ENST00000569394 ZBTB7CA1YPR0 619 aa12.72□□□□□ -0.37
GTF3C1-210ENST00000569394 POLR3GLQ9BT43 218 aa12.72□□□□□ -0.37
GTF3C1-210ENST00000569394 CLSPNQ9HAW4 1339 aa12.71□□□□□ -0.37
GTF3C1-210ENST00000569394 USP21Q9UK80 565 aa12.71□□□□□ -0.37
GTF3C1-210ENST00000569394 TRPM3Q9HCF6 1732 aaPredicted RBP12.71□□□□□ -0.38
GTF3C1-210ENST00000569394 TOPAZ1Q8N9V7 1692 aa12.7□□□□□ -0.38
GTF3C1-210ENST00000569394 COL22A1Q8NFW1 1626 aaPredicted RBP12.7□□□□□ -0.38
GTF3C1-210ENST00000569394 ZNF772Q68DY9 489 aaPredicted RBP12.7□□□□□ -0.38
GTF3C1-210ENST00000569394 ABTB2Q8N961 1025 aa12.7□□□□□ -0.38
GTF3C1-210ENST00000569394 QTRT2Q9H974 415 aaKnown RBP12.7□□□□□ -0.38
GTF3C1-210ENST00000569394 SBNO1A3KN83 1393 aa12.69□□□□□ -0.38
GTF3C1-210ENST00000569394 USP47Q96K76 1375 aa12.69□□□□□ -0.38
GTF3C1-210ENST00000569394 PLEKHG3A1L390 1219 aa12.69□□□□□ -0.38
GTF3C1-210ENST00000569394 SOX12O15370 315 aa12.69□□□□□ -0.38
GTF3C1-210ENST00000569394 CCDC9Q9Y3X0 531 aaKnown RBP12.68□□□□□ -0.38
GTF3C1-210ENST00000569394 ARHGEF10O15013 1369 aa12.68□□□□□ -0.38
GTF3C1-210ENST00000569394 MYCNP04198 464 aaPredicted RBP12.67□□□□□ -0.38
GTF3C1-210ENST00000569394 RXRBP28702 533 aa12.67□□□□□ -0.38
GTF3C1-210ENST00000569394 ZC3H6P61129 1189 aaKnown RBP12.67□□□□□ -0.38
GTF3C1-210ENST00000569394 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.67□□□□□ -0.38
GTF3C1-210ENST00000569394 SLC12A5Q9H2X9 1139 aa12.67□□□□□ -0.38
GTF3C1-210ENST00000569394 MARF1Q9Y4F3 1742 aaKnown RBP12.67□□□□□ -0.38
GTF3C1-210ENST00000569394 POLR3AO14802 1390 aaPredicted RBP12.67□□□□□ -0.38
GTF3C1-210ENST00000569394 ALS2Q96Q42 1657 aa12.67□□□□□ -0.38
GTF3C1-210ENST00000569394 CHRNA2Q15822 529 aa12.66□□□□□ -0.38
GTF3C1-210ENST00000569394 TESK2Q96S53 571 aa12.66□□□□□ -0.38
GTF3C1-210ENST00000569394 TIMELESSQ9UNS1 1208 aa12.66□□□□□ -0.38
GTF3C1-210ENST00000569394 ABCA3Q99758 1704 aa12.65□□□□□ -0.38
GTF3C1-210ENST00000569394 FAM83GA6ND36 823 aa12.65□□□□□ -0.38
GTF3C1-210ENST00000569394 NLRP6P59044 892 aa12.64□□□□□ -0.39
GTF3C1-210ENST00000569394 ZRANB1Q9UGI0 708 aa12.64□□□□□ -0.39
GTF3C1-210ENST00000569394 ATAD2Q6PL18 1390 aa12.64□□□□□ -0.39
GTF3C1-210ENST00000569394 KTN1Q86UP2 1357 aaKnown RBP12.64□□□□□ -0.39
GTF3C1-210ENST00000569394 TMF1P82094 1093 aa12.63□□□□□ -0.39
GTF3C1-210ENST00000569394 PRDM11Q9NQV5 511 aa12.63□□□□□ -0.39
GTF3C1-210ENST00000569394 BTG4Q9NY30 223 aa12.63□□□□□ -0.39
GTF3C1-210ENST00000569394 USP6P35125 1406 aa12.62□□□□□ -0.39
GTF3C1-210ENST00000569394 A0A0G2JS52 829 aa12.62□□□□□ -0.39
GTF3C1-210ENST00000569394 ATXN8OSP0DMR3 200 aa12.62□□□□□ -0.39
GTF3C1-210ENST00000569394 HSPA5P11021 654 aaKnown RBP12.62□□□□□ -0.39
GTF3C1-210ENST00000569394 MYT1Q01538 1121 aa12.62□□□□□ -0.39
GTF3C1-210ENST00000569394 HDGFL2Q7Z4V5 671 aaPredicted RBP12.62□□□□□ -0.39
GTF3C1-210ENST00000569394 FNBP4Q8N3X1 1017 aaPredicted RBP12.62□□□□□ -0.39
GTF3C1-210ENST00000569394 STRN4Q9NRL3 753 aa12.62□□□□□ -0.39
GTF3C1-210ENST00000569394 TRPC5Q9UL62 973 aaPredicted RBP12.62□□□□□ -0.39
GTF3C1-210ENST00000569394 TTC21BQ7Z4L5 1316 aa12.62□□□□□ -0.39
GTF3C1-210ENST00000569394 AKAP12Q02952 1782 aa12.61□□□□□ -0.39
GTF3C1-210ENST00000569394 BCL9LQ86UU0 1499 aa12.61□□□□□ -0.39
GTF3C1-210ENST00000569394 KIAA0232Q92628 1395 aa12.61□□□□□ -0.39
GTF3C1-210ENST00000569394 RBM6P78332 1123 aaKnown RBP12.61□□□□□ -0.39
GTF3C1-210ENST00000569394 NLRP13Q86W25 1043 aa12.61□□□□□ -0.39
GTF3C1-210ENST00000569394 UNC5CLQ8IV45 518 aa12.61□□□□□ -0.39
GTF3C1-210ENST00000569394 PLCH1Q4KWH8 1693 aa12.61□□□□□ -0.39
GTF3C1-210ENST00000569394 SBNO2Q9Y2G9 1366 aa12.6□□□□□ -0.39
GTF3C1-210ENST00000569394 PHRF1Q9P1Y6 1649 aaKnown RBP12.6□□□□□ -0.39
GTF3C1-210ENST00000569394 NME9Q86XW9 330 aa12.6□□□□□ -0.39
GTF3C1-210ENST00000569394 ZNF692Q9BU19 519 aaPredicted RBP12.6□□□□□ -0.39
GTF3C1-210ENST00000569394 USP35Q9P2H5 1018 aa12.6□□□□□ -0.39
GTF3C1-210ENST00000569394 CRYBG1Q9Y4K1 1723 aa12.59□□□□□ -0.39
GTF3C1-210ENST00000569394 EIF4G2P78344 907 aaKnown RBP eCLIP12.59□□□□□ -0.39
GTF3C1-210ENST00000569394 TERF2IPQ9NYB0 399 aa12.59□□□□□ -0.39
GTF3C1-210ENST00000569394 A0A1W2PP64 1363 aa12.58□□□□□ -0.4
GTF3C1-210ENST00000569394 PIK3C2AO00443 1686 aa12.58□□□□□ -0.4
GTF3C1-210ENST00000569394 GCP02774 474 aa12.58□□□□□ -0.4
GTF3C1-210ENST00000569394 EVA1CP58658 441 aa12.58□□□□□ -0.4
GTF3C1-210ENST00000569394 UPF1Q92900 1129 aaKnown RBP eCLIP12.58□□□□□ -0.4
GTF3C1-210ENST00000569394 GJD4Q96KN9 370 aaPredicted RBP12.58□□□□□ -0.4
GTF3C1-210ENST00000569394 SLIT2O94813 1529 aa12.57□□□□□ -0.4
GTF3C1-210ENST00000569394 RGS12O14924 1447 aa12.57□□□□□ -0.4
GTF3C1-210ENST00000569394 ATRNO75882 1429 aa12.57□□□□□ -0.4
GTF3C1-210ENST00000569394 CPSF1Q10570 1443 aaKnown RBP12.57□□□□□ -0.4
GTF3C1-210ENST00000569394 CD163L1Q9NR16 1453 aa12.57□□□□□ -0.4
GTF3C1-210ENST00000569394 MON2Q7Z3U7 1717 aa12.56□□□□□ -0.4
GTF3C1-210ENST00000569394 COL14A1Q05707 1796 aaKnown RBP12.56□□□□□ -0.4
GTF3C1-210ENST00000569394 NRKQ7Z2Y5 1582 aa12.56□□□□□ -0.4
GTF3C1-210ENST00000569394 SSH2Q76I76 1423 aa12.55□□□□□ -0.4
GTF3C1-210ENST00000569394 FBLN1P23142 703 aa12.55□□□□□ -0.4
GTF3C1-210ENST00000569394 FAM98CQ17RN3 349 aaKnown RBP12.55□□□□□ -0.4
GTF3C1-210ENST00000569394 VPS72Q15906 364 aa12.54□□□□□ -0.4
GTF3C1-210ENST00000569394 USP19O94966 1318 aa12.54□□□□□ -0.4
GTF3C1-210ENST00000569394 TTC21AQ8NDW8 1320 aa12.54□□□□□ -0.4
GTF3C1-210ENST00000569394 NRAPQ86VF7 1730 aa12.54□□□□□ -0.4
GTF3C1-210ENST00000569394 GLI3P10071 1580 aa12.53□□□□□ -0.4
GTF3C1-210ENST00000569394 SLC24A1O60721 1099 aa12.53□□□□□ -0.4
GTF3C1-210ENST00000569394 CDCA8Q53HL2 280 aa12.53□□□□□ -0.4
GTF3C1-210ENST00000569394 LARP1Q6PKG0 1096 aaKnown RBP12.53□□□□□ -0.4
GTF3C1-210ENST00000569394 GGNBP2Q9H3C7 697 aa12.53□□□□□ -0.4
GTF3C1-210ENST00000569394 NWD2Q9ULI1 1742 aa12.53□□□□□ -0.4
GTF3C1-210ENST00000569394 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.52□□□□□ -0.41
GTF3C1-210ENST00000569394 C11orf95C9JLR9 678 aaPredicted RBP12.52□□□□□ -0.41
GTF3C1-210ENST00000569394 CNGB1Q14028 1251 aaPredicted RBP12.52□□□□□ -0.41
GTF3C1-210ENST00000569394 FAM182BQ5T319 152 aa12.52□□□□□ -0.41
GTF3C1-210ENST00000569394 SEPT12Q8IYM1 358 aa12.52□□□□□ -0.41
GTF3C1-210ENST00000569394 RGPD5Q99666 1765 aa12.51□□□□□ -0.41
GTF3C1-210ENST00000569394 CSB-PGBD3P0DP91 1061 aa12.51□□□□□ -0.41
GTF3C1-210ENST00000569394 PUS7Q96PZ0 661 aaKnown RBP12.51□□□□□ -0.41
GTF3C1-210ENST00000569394 AXIN2Q9Y2T1 843 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms