RNA–Protein interactions for RNA: ENST00000568452.6

CLN3-233, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,616 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-233ENST00000568452 RBM33Q96EV2 1170 aaKnown RBP25.38■■□□□ 1.65
CLN3-233ENST00000568452 BLMP54132 1417 aaPredicted RBP25.38■■□□□ 1.65
CLN3-233ENST00000568452 PMFBP1Q8TBY8 1022 aa25.37■■□□□ 1.65
CLN3-233ENST00000568452 TTC21AQ8NDW8 1320 aa25.37■■□□□ 1.65
CLN3-233ENST00000568452 NME9Q86XW9 330 aa25.37■■□□□ 1.65
CLN3-233ENST00000568452 COG3Q96JB2 828 aa25.37■■□□□ 1.65
CLN3-233ENST00000568452 ADAMTS8Q9UP79 889 aa25.36■■□□□ 1.65
CLN3-233ENST00000568452 ZNF335Q9H4Z2 1342 aaPredicted RBP25.35■■□□□ 1.65
CLN3-233ENST00000568452 C19orf44Q9H6X5 657 aa25.35■■□□□ 1.65
CLN3-233ENST00000568452 SSH2Q76I76 1423 aa25.35■■□□□ 1.65
CLN3-233ENST00000568452 PHF8Q9UPP1 1060 aa25.33■■□□□ 1.65
CLN3-233ENST00000568452 STRCP1A6NGW2 1772 aa25.32■■□□□ 1.64
CLN3-233ENST00000568452 TMEM94Q12767 1356 aa25.32■■□□□ 1.64
CLN3-233ENST00000568452 AATKQ6ZMQ8 1374 aa25.31■■□□□ 1.64
CLN3-233ENST00000568452 DCCP43146 1447 aa25.31■■□□□ 1.64
CLN3-233ENST00000568452 OVOS2A0A0J9YW53 1432 aa25.28■■□□□ 1.64
CLN3-233ENST00000568452 OVOS2Q6IE36 1432 aa25.28■■□□□ 1.64
CLN3-233ENST00000568452 SHPRHQ149N8 1683 aa25.28■■□□□ 1.64
CLN3-233ENST00000568452 ESCO1Q5FWF5 840 aa25.26■■□□□ 1.63
CLN3-233ENST00000568452 ZRANB1Q9UGI0 708 aa25.26■■□□□ 1.63
CLN3-233ENST00000568452 ATF3P18847 181 aa25.26■■□□□ 1.63
CLN3-233ENST00000568452 NUDCQ9Y266 331 aa25.26■■□□□ 1.63
CLN3-233ENST00000568452 USP31Q70CQ4 1352 aa25.25■■□□□ 1.63
CLN3-233ENST00000568452 PNPLA6Q8IY17 1366 aa25.25■■□□□ 1.63
CLN3-233ENST00000568452 SMG6Q86US8 1419 aaKnown RBP25.24■■□□□ 1.63
CLN3-233ENST00000568452 POLKQ9UBT6 870 aa25.24■■□□□ 1.63
CLN3-233ENST00000568452 COL3A1P02461 1466 aaPredicted RBP25.24■■□□□ 1.63
CLN3-233ENST00000568452 MSH6P52701 1360 aa25.22■■□□□ 1.63
CLN3-233ENST00000568452 C1orf167Q5SNV9 1468 aa25.22■■□□□ 1.63
CLN3-233ENST00000568452 CADPS2Q86UW7 1296 aa25.22■■□□□ 1.63
CLN3-233ENST00000568452 KIF1AQ12756 1690 aa25.21■■□□□ 1.63
CLN3-233ENST00000568452 LRRC7Q96NW7 1537 aa25.21■■□□□ 1.63
CLN3-233ENST00000568452 MAP2P11137 1827 aaKnown RBP25.2■■□□□ 1.63
CLN3-233ENST00000568452 CDK12Q9NYV4 1490 aaPredicted RBP25.2■■□□□ 1.63
CLN3-233ENST00000568452 NGEFQ8N5V2 710 aa25.2■■□□□ 1.62
CLN3-233ENST00000568452 DIAPH1O60610 1272 aaKnown RBP25.19■■□□□ 1.62
CLN3-233ENST00000568452 PSME1Q06323 249 aa25.19■■□□□ 1.62
CLN3-233ENST00000568452 PDE3BQ13370 1112 aa25.19■■□□□ 1.62
CLN3-233ENST00000568452 MST1RQ04912 1400 aa25.18■■□□□ 1.62
CLN3-233ENST00000568452 PIK3C2AO00443 1686 aa25.18■■□□□ 1.62
CLN3-233ENST00000568452 LTBP4Q8N2S1 1624 aa25.18■■□□□ 1.62
CLN3-233ENST00000568452 ORAI2Q96SN7 254 aa25.18■■□□□ 1.62
CLN3-233ENST00000568452 GTF3C3Q9Y5Q9 886 aa25.17■■□□□ 1.62
CLN3-233ENST00000568452 USP54Q70EL1 1684 aa25.17■■□□□ 1.62
CLN3-233ENST00000568452 PPM1GO15355 546 aaPredicted RBP25.16■■□□□ 1.62
CLN3-233ENST00000568452 EMILIN1Q9Y6C2 1016 aa25.16■■□□□ 1.62
CLN3-233ENST00000568452 PAK3O75914 559 aaPredicted RBP25.15■■□□□ 1.62
CLN3-233ENST00000568452 U2AF1L5P0DN76 240 aaPredicted RBP25.15■■□□□ 1.62
CLN3-233ENST00000568452 NLRP6P59044 892 aa25.15■■□□□ 1.62
CLN3-233ENST00000568452 U2AF1Q01081 240 aaKnown RBP eCLIP25.15■■□□□ 1.62
CLN3-233ENST00000568452 CCDC146Q8IYE0 955 aa25.15■■□□□ 1.62
CLN3-233ENST00000568452 RUNDC1Q96C34 613 aa25.15■■□□□ 1.62
CLN3-233ENST00000568452 FBLN1P23142 703 aa25.15■■□□□ 1.62
CLN3-233ENST00000568452 ABTB2Q8N961 1025 aa25.15■■□□□ 1.62
CLN3-233ENST00000568452 SENP3-EIF4A1A0A087X0R7 540 aa25.14■■□□□ 1.61
CLN3-233ENST00000568452 SALL2Q9Y467 1007 aaPredicted RBP25.14■■□□□ 1.61
CLN3-233ENST00000568452 XIRP1Q702N8 1843 aaKnown RBP25.13■■□□□ 1.61
CLN3-233ENST00000568452 U2SURPO15042 1029 aaKnown RBP25.13■■□□□ 1.61
CLN3-233ENST00000568452 RRS1Q15050 365 aaKnown RBP25.13■■□□□ 1.61
CLN3-233ENST00000568452 PNNQ9H307 717 aaKnown RBP25.13■■□□□ 1.61
CLN3-233ENST00000568452 APAF1O14727 1248 aa25.12■■□□□ 1.61
CLN3-233ENST00000568452 FOXO3O43524 673 aa25.11■■□□□ 1.61
CLN3-233ENST00000568452 NCBP3Q53F19 620 aaKnown RBP25.08■■□□□ 1.61
CLN3-233ENST00000568452 KRT28Q7Z3Y7 464 aa25.08■■□□□ 1.61
CLN3-233ENST00000568452 KIF24Q5T7B8 1368 aa25.06■■□□□ 1.6
CLN3-233ENST00000568452 IL13P35225 146 aa25.06■■□□□ 1.6
CLN3-233ENST00000568452 MARF1Q9Y4F3 1742 aaKnown RBP25.06■■□□□ 1.6
CLN3-233ENST00000568452 IQSEC2Q5JU85 1478 aa25.05■■□□□ 1.6
CLN3-233ENST00000568452 FCHSD2O94868 740 aa25.05■■□□□ 1.6
CLN3-233ENST00000568452 ZNF521Q96K83 1311 aa25.05■■□□□ 1.6
CLN3-233ENST00000568452 SBNO1A3KN83 1393 aa25.05■■□□□ 1.6
CLN3-233ENST00000568452 NUTM2GQ5VZR2 741 aa25.04■■□□□ 1.6
CLN3-233ENST00000568452 MAP3K19Q56UN5 1328 aa25.04■■□□□ 1.6
CLN3-233ENST00000568452 NPHP3Q7Z494 1330 aa25.04■■□□□ 1.6
CLN3-233ENST00000568452 TRPM3Q9HCF6 1732 aaPredicted RBP25.04■■□□□ 1.6
CLN3-233ENST00000568452 SOX12O15370 315 aa25.04■■□□□ 1.6
CLN3-233ENST00000568452 TCP11L2Q8N4U5 519 aa25.04■■□□□ 1.6
CLN3-233ENST00000568452 FLT4P35916 1363 aa25.04■■□□□ 1.6
CLN3-233ENST00000568452 KCNH5Q8NCM2 988 aa25.03■■□□□ 1.6
CLN3-233ENST00000568452 MAPK8IP3Q9UPT6 1336 aa25.03■■□□□ 1.6
CLN3-233ENST00000568452 NEFMP07197 916 aa25.01■■□□□ 1.59
CLN3-233ENST00000568452 AMPHP49418 695 aa25.01■■□□□ 1.59
CLN3-233ENST00000568452 GOLGA2Q08379 1002 aa25.01■■□□□ 1.59
CLN3-233ENST00000568452 PLEKHF1Q96S99 279 aa25.01■■□□□ 1.59
CLN3-233ENST00000568452 PEAK1Q9H792 1746 aa25.01■■□□□ 1.59
CLN3-233ENST00000568452 NEFLP07196 543 aa25.01■■□□□ 1.59
CLN3-233ENST00000568452 XPCQ01831 940 aaPredicted RBP25.01■■□□□ 1.59
CLN3-233ENST00000568452 EIF4A2Q14240 407 aaKnown RBP24.99■■□□□ 1.59
CLN3-233ENST00000568452 CCDC27Q2M243 656 aa24.99■■□□□ 1.59
CLN3-233ENST00000568452 RTL1A6NKG5 1358 aa24.98■■□□□ 1.59
CLN3-233ENST00000568452 RSPH6AQ9H0K4 717 aa24.98■■□□□ 1.59
CLN3-233ENST00000568452 CDCA7LQ96GN5 454 aa24.97■■□□□ 1.59
CLN3-233ENST00000568452 SLAIN2Q9P270 581 aa24.97■■□□□ 1.59
CLN3-233ENST00000568452 SUPT16HQ9Y5B9 1047 aaKnown RBP24.97■■□□□ 1.59
CLN3-233ENST00000568452 SLIT3O75094 1523 aa24.97■■□□□ 1.59
CLN3-233ENST00000568452 HSP90AB2PQ58FF8 381 aa24.97■■□□□ 1.59
CLN3-233ENST00000568452 USP19O94966 1318 aa24.96■■□□□ 1.59
CLN3-233ENST00000568452 NFAT5O94916 1531 aa24.96■■□□□ 1.59
CLN3-233ENST00000568452 BRINP3Q76B58 766 aa24.96■■□□□ 1.59
CLN3-233ENST00000568452 WWC1Q8IX03 1113 aa24.96■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms