RNA–Protein interactions for RNA: ENST00000567805.5

CLK3-219, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 327 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-219ENST00000567805 KRT28Q7Z3Y7 464 aa6.92□□□□□ -1.3
CLK3-219ENST00000567805 NGLY1Q96IV0 654 aa6.92□□□□□ -1.3
CLK3-219ENST00000567805 HIRIP3Q9BW71 556 aaPredicted RBP6.92□□□□□ -1.3
CLK3-219ENST00000567805 EP400Q96L91 3159 aa6.92□□□□□ -1.3
CLK3-219ENST00000567805 MINK1Q8N4C8 1332 aaPredicted RBP6.92□□□□□ -1.3
CLK3-219ENST00000567805 NWD2Q9ULI1 1742 aa6.92□□□□□ -1.3
CLK3-219ENST00000567805 SBNO1A3KN83 1393 aa6.92□□□□□ -1.3
CLK3-219ENST00000567805 PLCH1Q4KWH8 1693 aa6.91□□□□□ -1.3
CLK3-219ENST00000567805 FNBP4Q8N3X1 1017 aaPredicted RBP6.91□□□□□ -1.3
CLK3-219ENST00000567805 QTRT2Q9H974 415 aaKnown RBP6.91□□□□□ -1.3
CLK3-219ENST00000567805 ARHGEF10O15013 1369 aa6.91□□□□□ -1.3
CLK3-219ENST00000567805 ATP7BP35670 1465 aa6.91□□□□□ -1.3
CLK3-219ENST00000567805 CRYBG1Q9Y4K1 1723 aa6.9□□□□□ -1.3
CLK3-219ENST00000567805 RBM6P78332 1123 aaKnown RBP6.9□□□□□ -1.3
CLK3-219ENST00000567805 NBPF1Q3BBV0 1214 aa6.9□□□□□ -1.3
CLK3-219ENST00000567805 PMFBP1Q8TBY8 1022 aa6.9□□□□□ -1.3
CLK3-219ENST00000567805 L3MBTL2Q969R5 705 aa6.9□□□□□ -1.3
CLK3-219ENST00000567805 USP21Q9UK80 565 aa6.9□□□□□ -1.3
CLK3-219ENST00000567805 PRR36Q9H6K5 1346 aa6.9□□□□□ -1.3
CLK3-219ENST00000567805 GPRASP1Q5JY77 1395 aa6.9□□□□□ -1.31
CLK3-219ENST00000567805 BCL9LQ86UU0 1499 aa6.9□□□□□ -1.31
CLK3-219ENST00000567805 SIN3AQ96ST3 1273 aa6.89□□□□□ -1.31
CLK3-219ENST00000567805 TRPC5Q9UL62 973 aaPredicted RBP6.89□□□□□ -1.31
CLK3-219ENST00000567805 RGS12O14924 1447 aa6.89□□□□□ -1.31
CLK3-219ENST00000567805 ATRNO75882 1429 aa6.89□□□□□ -1.31
CLK3-219ENST00000567805 SLIT2O94813 1529 aa6.89□□□□□ -1.31
CLK3-219ENST00000567805 COL14A1Q05707 1796 aaKnown RBP6.88□□□□□ -1.31
CLK3-219ENST00000567805 PHRF1Q9P1Y6 1649 aaKnown RBP6.88□□□□□ -1.31
CLK3-219ENST00000567805 CENPJQ9HC77 1338 aaPredicted RBP6.88□□□□□ -1.31
CLK3-219ENST00000567805 HAP1P54257 671 aaPredicted RBP6.88□□□□□ -1.31
CLK3-219ENST00000567805 TRIM26Q12899 539 aaPredicted RBP6.88□□□□□ -1.31
CLK3-219ENST00000567805 NEUROD1Q13562 356 aa6.88□□□□□ -1.31
CLK3-219ENST00000567805 NGDNQ8NEJ9 315 aaKnown RBP6.88□□□□□ -1.31
CLK3-219ENST00000567805 NUDT16Q96DE0 195 aaKnown RBP6.88□□□□□ -1.31
CLK3-219ENST00000567805 CDK19Q9BWU1 502 aa6.88□□□□□ -1.31
CLK3-219ENST00000567805 NRAPQ86VF7 1730 aa6.87□□□□□ -1.31
CLK3-219ENST00000567805 POLR3AO14802 1390 aaPredicted RBP6.87□□□□□ -1.31
CLK3-219ENST00000567805 LMOD2Q6P5Q4 547 aa6.87□□□□□ -1.31
CLK3-219ENST00000567805 ZBTB12Q9Y330 459 aaPredicted RBP6.87□□□□□ -1.31
CLK3-219ENST00000567805 GLI3P10071 1580 aa6.86□□□□□ -1.31
CLK3-219ENST00000567805 ROCK2O75116 1388 aaKnown RBP6.86□□□□□ -1.31
CLK3-219ENST00000567805 BRWD3Q6RI45 1802 aa6.86□□□□□ -1.31
CLK3-219ENST00000567805 UNC5CLQ8IV45 518 aa6.86□□□□□ -1.31
CLK3-219ENST00000567805 CABLES1Q8TDN4 633 aa6.86□□□□□ -1.31
CLK3-219ENST00000567805 UPF1Q92900 1129 aaKnown RBP eCLIP6.86□□□□□ -1.31
CLK3-219ENST00000567805 CCDC61Q9Y6R9 512 aa6.86□□□□□ -1.31
CLK3-219ENST00000567805 RALGAPBQ86X10 1494 aa6.85□□□□□ -1.31
CLK3-219ENST00000567805 PPIP5K1Q6PFW1 1433 aa6.85□□□□□ -1.31
CLK3-219ENST00000567805 AKAP12Q02952 1782 aa6.85□□□□□ -1.31
CLK3-219ENST00000567805 ACEP12821 1306 aa6.85□□□□□ -1.31
CLK3-219ENST00000567805 PLEKHG3A1L390 1219 aa6.85□□□□□ -1.31
CLK3-219ENST00000567805 PAK3O75914 559 aaPredicted RBP6.85□□□□□ -1.31
CLK3-219ENST00000567805 SRPK2P78362 688 aaKnown RBP6.85□□□□□ -1.31
CLK3-219ENST00000567805 GJD4Q96KN9 370 aaPredicted RBP6.85□□□□□ -1.31
CLK3-219ENST00000567805 ATAD2Q6PL18 1390 aa6.84□□□□□ -1.31
CLK3-219ENST00000567805 TONSLQ96HA7 1378 aa6.84□□□□□ -1.31
CLK3-219ENST00000567805 PLEKHG5O94827 1062 aa6.84□□□□□ -1.31
CLK3-219ENST00000567805 NBPF8Q3BBV2 869 aa6.84□□□□□ -1.31
CLK3-219ENST00000567805 BRD4O60885 1362 aaPredicted RBP6.83□□□□□ -1.32
CLK3-219ENST00000567805 NRKQ7Z2Y5 1582 aa6.83□□□□□ -1.32
CLK3-219ENST00000567805 EVC2Q86UK5 1308 aa6.83□□□□□ -1.32
CLK3-219ENST00000567805 FAM83GA6ND36 823 aa6.83□□□□□ -1.32
CLK3-219ENST00000567805 VPS72Q15906 364 aa6.83□□□□□ -1.32
CLK3-219ENST00000567805 CABP2Q9NPB3 220 aa6.83□□□□□ -1.32
CLK3-219ENST00000567805 SBNO2Q9Y2G9 1366 aa6.82□□□□□ -1.32
CLK3-219ENST00000567805 MON2Q7Z3U7 1717 aa6.82□□□□□ -1.32
CLK3-219ENST00000567805 PIK3C2AO00443 1686 aa6.82□□□□□ -1.32
CLK3-219ENST00000567805 FOXD4L1Q9NU39 408 aa6.82□□□□□ -1.32
CLK3-219ENST00000567805 BTG4Q9NY30 223 aa6.82□□□□□ -1.32
CLK3-219ENST00000567805 USP6P35125 1406 aa6.82□□□□□ -1.32
CLK3-219ENST00000567805 LMO7Q8WWI1 1683 aa6.81□□□□□ -1.32
CLK3-219ENST00000567805 ONECUT3O60422 494 aaPredicted RBP6.81□□□□□ -1.32
CLK3-219ENST00000567805 ABTB2Q8N961 1025 aa6.81□□□□□ -1.32
CLK3-219ENST00000567805 CARD11Q9BXL7 1154 aa6.81□□□□□ -1.32
CLK3-219ENST00000567805 PRDM11Q9NQV5 511 aa6.81□□□□□ -1.32
CLK3-219ENST00000567805 CABP1Q9NZU7 370 aa6.81□□□□□ -1.32
CLK3-219ENST00000567805 CCDC9Q9Y3X0 531 aaKnown RBP6.81□□□□□ -1.32
CLK3-219ENST00000567805 KIAA0232Q92628 1395 aa6.81□□□□□ -1.32
CLK3-219ENST00000567805 SLIT3O75094 1523 aa6.81□□□□□ -1.32
CLK3-219ENST00000567805 THSD7AQ9UPZ6 1657 aa6.81□□□□□ -1.32
CLK3-219ENST00000567805 USP19O94966 1318 aa6.8□□□□□ -1.32
CLK3-219ENST00000567805 NUTM2GQ5VZR2 741 aa6.8□□□□□ -1.32
CLK3-219ENST00000567805 SSH2Q76I76 1423 aa6.8□□□□□ -1.32
CLK3-219ENST00000567805 NLRP13Q86W25 1043 aa6.8□□□□□ -1.32
CLK3-219ENST00000567805 CCDC125Q86Z20 511 aa6.8□□□□□ -1.32
CLK3-219ENST00000567805 USP54Q70EL1 1684 aa6.8□□□□□ -1.32
CLK3-219ENST00000567805 CPDO75976 1380 aa6.8□□□□□ -1.32
CLK3-219ENST00000567805 ZC3H6P61129 1189 aaKnown RBP6.79□□□□□ -1.32
CLK3-219ENST00000567805 SEPT12Q8IYM1 358 aa6.79□□□□□ -1.32
CLK3-219ENST00000567805 ZNF692Q9BU19 519 aaPredicted RBP6.79□□□□□ -1.32
CLK3-219ENST00000567805 RGPD5Q99666 1765 aa6.79□□□□□ -1.32
CLK3-219ENST00000567805 RGPD1P0DJD0 1748 aa6.79□□□□□ -1.32
CLK3-219ENST00000567805 SPATA31A5Q5VU36 1347 aa6.78□□□□□ -1.32
CLK3-219ENST00000567805 SPATA31A7Q8IWB4 1347 aa6.78□□□□□ -1.32
CLK3-219ENST00000567805 CAMTA1Q9Y6Y1 1673 aa6.78□□□□□ -1.32
CLK3-219ENST00000567805 BLMP54132 1417 aaPredicted RBP6.78□□□□□ -1.32
CLK3-219ENST00000567805 CPSF1Q10570 1443 aaKnown RBP6.78□□□□□ -1.32
CLK3-219ENST00000567805 COL18A1P39060 1754 aa6.78□□□□□ -1.32
CLK3-219ENST00000567805 GCP02774 474 aa6.78□□□□□ -1.32
CLK3-219ENST00000567805 CHRNA2Q15822 529 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms