RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 SPATA31A6Q5VVP1 1343 aa16.95■□□□□ 0.3
SF3B3-208ENST00000567250 MARF1Q9Y4F3 1742 aaKnown RBP16.94■□□□□ 0.3
SF3B3-208ENST00000567250 TMC1Q8TDI8 760 aa16.94■□□□□ 0.3
SF3B3-208ENST00000567250 SPATA31A3Q5VYP0 1347 aa16.94■□□□□ 0.3
SF3B3-208ENST00000567250 CRYBG1Q9Y4K1 1723 aa16.93■□□□□ 0.3
SF3B3-208ENST00000567250 HDGFL2Q7Z4V5 671 aaPredicted RBP16.93■□□□□ 0.3
SF3B3-208ENST00000567250 ZNF692Q9BU19 519 aaPredicted RBP16.93■□□□□ 0.3
SF3B3-208ENST00000567250 TERF2IPQ9NYB0 399 aa16.93■□□□□ 0.3
SF3B3-208ENST00000567250 CPSF1Q10570 1443 aaKnown RBP16.93■□□□□ 0.3
SF3B3-208ENST00000567250 CD163L1Q9NR16 1453 aa16.93■□□□□ 0.3
SF3B3-208ENST00000567250 PHRF1Q9P1Y6 1649 aaKnown RBP16.92■□□□□ 0.3
SF3B3-208ENST00000567250 KTN1Q86UP2 1357 aaKnown RBP16.91■□□□□ 0.3
SF3B3-208ENST00000567250 ANKRD36BQ8N2N9 1353 aa16.91■□□□□ 0.3
SF3B3-208ENST00000567250 PIK3C2AO00443 1686 aa16.91■□□□□ 0.3
SF3B3-208ENST00000567250 USP54Q70EL1 1684 aa16.91■□□□□ 0.3
SF3B3-208ENST00000567250 A0A1W2PP64 1363 aa16.9■□□□□ 0.3
SF3B3-208ENST00000567250 EDC4Q6P2E9 1401 aaKnown RBP16.9■□□□□ 0.3
SF3B3-208ENST00000567250 PAK3O75914 559 aaPredicted RBP16.9■□□□□ 0.3
SF3B3-208ENST00000567250 KIF20BQ96Q89 1820 aa16.9■□□□□ 0.3
SF3B3-208ENST00000567250 LMOD2Q6P5Q4 547 aa16.88■□□□□ 0.29
SF3B3-208ENST00000567250 SLC12A5Q9H2X9 1139 aa16.88■□□□□ 0.29
SF3B3-208ENST00000567250 TTC21AQ8NDW8 1320 aa16.88■□□□□ 0.29
SF3B3-208ENST00000567250 POLR3GLQ9BT43 218 aa16.87■□□□□ 0.29
SF3B3-208ENST00000567250 LRP6O75581 1613 aa16.87■□□□□ 0.29
SF3B3-208ENST00000567250 SSH2Q76I76 1423 aa16.87■□□□□ 0.29
SF3B3-208ENST00000567250 HAP1P54257 671 aaPredicted RBP16.84■□□□□ 0.29
SF3B3-208ENST00000567250 ABTB2Q8N961 1025 aa16.84■□□□□ 0.29
SF3B3-208ENST00000567250 KIF7Q2M1P5 1343 aa16.84■□□□□ 0.29
SF3B3-208ENST00000567250 TTC21BQ7Z4L5 1316 aa16.83■□□□□ 0.28
SF3B3-208ENST00000567250 ANKRD26Q9UPS8 1709 aa16.83■□□□□ 0.28
SF3B3-208ENST00000567250 PLCH1Q4KWH8 1693 aa16.82■□□□□ 0.28
SF3B3-208ENST00000567250 SLIT3O75094 1523 aa16.82■□□□□ 0.28
SF3B3-208ENST00000567250 CCDC7Q96M83 1385 aa16.82■□□□□ 0.28
SF3B3-208ENST00000567250 MEX3CQ5U5Q3 659 aaKnown RBP16.82■□□□□ 0.28
SF3B3-208ENST00000567250 NLRP13Q86W25 1043 aa16.82■□□□□ 0.28
SF3B3-208ENST00000567250 NUTM2BA6NNL0 878 aaPredicted RBP16.81■□□□□ 0.28
SF3B3-208ENST00000567250 NUTM2EB1AL46 878 aaPredicted RBP16.81■□□□□ 0.28
SF3B3-208ENST00000567250 NUTM2AQ8IVF1 878 aaPredicted RBP16.81■□□□□ 0.28
SF3B3-208ENST00000567250 NWD2Q9ULI1 1742 aa16.81■□□□□ 0.28
SF3B3-208ENST00000567250 NSD3Q9BZ95 1437 aa16.8■□□□□ 0.28
SF3B3-208ENST00000567250 COL14A1Q05707 1796 aaKnown RBP16.8■□□□□ 0.28
SF3B3-208ENST00000567250 USP19O94966 1318 aa16.79■□□□□ 0.28
SF3B3-208ENST00000567250 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.79■□□□□ 0.28
SF3B3-208ENST00000567250 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.79■□□□□ 0.28
SF3B3-208ENST00000567250 C11orf95C9JLR9 678 aaPredicted RBP16.78■□□□□ 0.28
SF3B3-208ENST00000567250 NLRP6P59044 892 aa16.78■□□□□ 0.28
SF3B3-208ENST00000567250 OVOS2A0A0J9YW53 1432 aa16.78■□□□□ 0.28
SF3B3-208ENST00000567250 OVOS2Q6IE36 1432 aa16.78■□□□□ 0.28
SF3B3-208ENST00000567250 USP31Q70CQ4 1352 aa16.77■□□□□ 0.28
SF3B3-208ENST00000567250 LTN1O94822 1766 aa16.77■□□□□ 0.28
SF3B3-208ENST00000567250 WASHC2AQ641Q2 1341 aa16.77■□□□□ 0.28
SF3B3-208ENST00000567250 ADAMTS2O95450 1211 aa16.76■□□□□ 0.27
SF3B3-208ENST00000567250 KCNA4P22459 653 aa16.76■□□□□ 0.27
SF3B3-208ENST00000567250 NUTM2GQ5VZR2 741 aa16.76■□□□□ 0.27
SF3B3-208ENST00000567250 CGNL1Q0VF96 1302 aa16.75■□□□□ 0.27
SF3B3-208ENST00000567250 PLEKHG5O94827 1062 aa16.75■□□□□ 0.27
SF3B3-208ENST00000567250 CABLES1Q8TDN4 633 aa16.75■□□□□ 0.27
SF3B3-208ENST00000567250 NFAT5O94916 1531 aa16.75■□□□□ 0.27
SF3B3-208ENST00000567250 ABCC6O95255 1503 aa16.75■□□□□ 0.27
SF3B3-208ENST00000567250 NME9Q86XW9 330 aa16.74■□□□□ 0.27
SF3B3-208ENST00000567250 KCNH5Q8NCM2 988 aa16.74■□□□□ 0.27
SF3B3-208ENST00000567250 NSD2O96028 1365 aa16.74■□□□□ 0.27
SF3B3-208ENST00000567250 NRAPQ86VF7 1730 aa16.73■□□□□ 0.27
SF3B3-208ENST00000567250 COG3Q96JB2 828 aa16.73■□□□□ 0.27
SF3B3-208ENST00000567250 C8orf37Q96NL8 207 aa16.73■□□□□ 0.27
SF3B3-208ENST00000567250 PANK3Q9H999 370 aa16.73■□□□□ 0.27
SF3B3-208ENST00000567250 CPDO75976 1380 aa16.73■□□□□ 0.27
SF3B3-208ENST00000567250 LMO7Q8WWI1 1683 aa16.72■□□□□ 0.27
SF3B3-208ENST00000567250 GCP02774 474 aa16.71■□□□□ 0.27
SF3B3-208ENST00000567250 NGLY1Q96IV0 654 aa16.71■□□□□ 0.27
SF3B3-208ENST00000567250 PRDM11Q9NQV5 511 aa16.71■□□□□ 0.27
SF3B3-208ENST00000567250 KIAA0232Q92628 1395 aa16.71■□□□□ 0.27
SF3B3-208ENST00000567250 SLIT2O94813 1529 aa16.7■□□□□ 0.26
SF3B3-208ENST00000567250 ZNF772Q68DY9 489 aaPredicted RBP16.7■□□□□ 0.26
SF3B3-208ENST00000567250 CARD14Q9BXL6 1004 aa16.7■□□□□ 0.26
SF3B3-208ENST00000567250 KNSTRNQ9Y448 316 aa16.7■□□□□ 0.26
SF3B3-208ENST00000567250 AFF2P51816 1311 aa16.7■□□□□ 0.26
SF3B3-208ENST00000567250 FYB1O15117 783 aa16.68■□□□□ 0.26
SF3B3-208ENST00000567250 COL18A1P39060 1754 aa16.67■□□□□ 0.26
SF3B3-208ENST00000567250 FAM208AQ9UK61 1670 aaKnown RBP16.67■□□□□ 0.26
SF3B3-208ENST00000567250 ZC3H6P61129 1189 aaKnown RBP16.67■□□□□ 0.26
SF3B3-208ENST00000567250 GGNBP2Q9H3C7 697 aa16.67■□□□□ 0.26
SF3B3-208ENST00000567250 SOX12O15370 315 aa16.66■□□□□ 0.26
SF3B3-208ENST00000567250 FNBP4Q8N3X1 1017 aaPredicted RBP16.66■□□□□ 0.26
SF3B3-208ENST00000567250 ZRANB1Q9UGI0 708 aa16.66■□□□□ 0.26
SF3B3-208ENST00000567250 RGPD5Q99666 1765 aa16.66■□□□□ 0.26
SF3B3-208ENST00000567250 AATKQ6ZMQ8 1374 aa16.65■□□□□ 0.26
SF3B3-208ENST00000567250 USP21Q9UK80 565 aa16.65■□□□□ 0.26
SF3B3-208ENST00000567250 MAP2P11137 1827 aaKnown RBP16.65■□□□□ 0.26
SF3B3-208ENST00000567250 BCL9LQ86UU0 1499 aa16.64■□□□□ 0.25
SF3B3-208ENST00000567250 RTL1A6NKG5 1358 aa16.64■□□□□ 0.25
SF3B3-208ENST00000567250 NPC1L1Q9UHC9 1359 aa16.64■□□□□ 0.25
SF3B3-208ENST00000567250 ZBTB7CA1YPR0 619 aa16.63■□□□□ 0.25
SF3B3-208ENST00000567250 FAM83GA6ND36 823 aa16.63■□□□□ 0.25
SF3B3-208ENST00000567250 CAMTA1Q9Y6Y1 1673 aa16.62■□□□□ 0.25
SF3B3-208ENST00000567250 ATRNO75882 1429 aa16.62■□□□□ 0.25
SF3B3-208ENST00000567250 BLMP54132 1417 aaPredicted RBP16.62■□□□□ 0.25
SF3B3-208ENST00000567250 COL5A2P05997 1499 aaPredicted RBP16.62■□□□□ 0.25
SF3B3-208ENST00000567250 CHRNA2Q15822 529 aa16.62■□□□□ 0.25
SF3B3-208ENST00000567250 NCBP3Q53F19 620 aaKnown RBP16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms