RNA–Protein interactions for RNA: ENST00000566307.1

LSM3P5-201, Transcript of LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated pseudogene 5, humanhuman

BASIC

Gene LSM3P5, Length 306 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P5-201ENST00000566307 KIF20BQ96Q89 1820 aa11.88□□□□□ -0.51
LSM3P5-201ENST00000566307 PPIP5K1Q6PFW1 1433 aa11.87□□□□□ -0.51
LSM3P5-201ENST00000566307 PLEKHG3A1L390 1219 aa11.87□□□□□ -0.51
LSM3P5-201ENST00000566307 NGEFQ8N5V2 710 aa11.87□□□□□ -0.51
LSM3P5-201ENST00000566307 NUDT16Q96DE0 195 aaKnown RBP11.87□□□□□ -0.51
LSM3P5-201ENST00000566307 CABP1Q9NZU7 370 aa11.87□□□□□ -0.51
LSM3P5-201ENST00000566307 ITSN1Q15811 1721 aa11.86□□□□□ -0.51
LSM3P5-201ENST00000566307 PDE3BQ13370 1112 aa11.86□□□□□ -0.51
LSM3P5-201ENST00000566307 SMG6Q86US8 1419 aaKnown RBP11.86□□□□□ -0.51
LSM3P5-201ENST00000566307 CNGB1Q14028 1251 aaPredicted RBP11.85□□□□□ -0.51
LSM3P5-201ENST00000566307 PRR36Q9H6K5 1346 aa11.85□□□□□ -0.51
LSM3P5-201ENST00000566307 FMN2Q9NZ56 1722 aa11.84□□□□□ -0.51
LSM3P5-201ENST00000566307 FYB1O15117 783 aa11.84□□□□□ -0.51
LSM3P5-201ENST00000566307 NRKQ7Z2Y5 1582 aa11.84□□□□□ -0.51
LSM3P5-201ENST00000566307 WDR43Q15061 677 aaKnown RBP eCLIP11.83□□□□□ -0.52
LSM3P5-201ENST00000566307 SHPRHQ149N8 1683 aa11.83□□□□□ -0.52
LSM3P5-201ENST00000566307 NKTRP30414 1462 aaKnown RBP11.83□□□□□ -0.52
LSM3P5-201ENST00000566307 AATKQ6ZMQ8 1374 aa11.82□□□□□ -0.52
LSM3P5-201ENST00000566307 PNPLA6Q8IY17 1366 aa11.82□□□□□ -0.52
LSM3P5-201ENST00000566307 KCNA6P17658 529 aa11.82□□□□□ -0.52
LSM3P5-201ENST00000566307 CFAP53Q96M91 514 aa11.82□□□□□ -0.52
LSM3P5-201ENST00000566307 SSH2Q76I76 1423 aa11.82□□□□□ -0.52
LSM3P5-201ENST00000566307 ADGRL3Q9HAR2 1447 aa11.81□□□□□ -0.52
LSM3P5-201ENST00000566307 NCOA3Q9Y6Q9 1424 aa11.81□□□□□ -0.52
LSM3P5-201ENST00000566307 POLA2Q14181 598 aa11.81□□□□□ -0.52
LSM3P5-201ENST00000566307 ADAMTS8Q9UP79 889 aa11.81□□□□□ -0.52
LSM3P5-201ENST00000566307 COL3A1P02461 1466 aaPredicted RBP11.81□□□□□ -0.52
LSM3P5-201ENST00000566307 LRRC7Q96NW7 1537 aa11.81□□□□□ -0.52
LSM3P5-201ENST00000566307 USP6P35125 1406 aa11.8□□□□□ -0.52
LSM3P5-201ENST00000566307 NUDCQ9Y266 331 aa11.8□□□□□ -0.52
LSM3P5-201ENST00000566307 USP54Q70EL1 1684 aa11.79□□□□□ -0.52
LSM3P5-201ENST00000566307 NALCNQ8IZF0 1738 aa11.79□□□□□ -0.52
LSM3P5-201ENST00000566307 TTC21AQ8NDW8 1320 aa11.79□□□□□ -0.52
LSM3P5-201ENST00000566307 MTHFSP49914 203 aa11.78□□□□□ -0.52
LSM3P5-201ENST00000566307 ERICH6BQ5W0A0 696 aa11.78□□□□□ -0.52
LSM3P5-201ENST00000566307 ZNF521Q96K83 1311 aa11.78□□□□□ -0.52
LSM3P5-201ENST00000566307 USP31Q70CQ4 1352 aa11.78□□□□□ -0.52
LSM3P5-201ENST00000566307 RBM42Q9BTD8 480 aaKnown RBP11.77□□□□□ -0.53
LSM3P5-201ENST00000566307 GGNBP2Q9H3C7 697 aa11.77□□□□□ -0.53
LSM3P5-201ENST00000566307 ACEP12821 1306 aa11.77□□□□□ -0.53
LSM3P5-201ENST00000566307 OVOS2A0A0J9YW53 1432 aa11.77□□□□□ -0.53
LSM3P5-201ENST00000566307 OVOS2Q6IE36 1432 aa11.77□□□□□ -0.53
LSM3P5-201ENST00000566307 CDK12Q9NYV4 1490 aaPredicted RBP11.76□□□□□ -0.53
LSM3P5-201ENST00000566307 RNF123Q5XPI4 1314 aa11.76□□□□□ -0.53
LSM3P5-201ENST00000566307 TTC21BQ7Z4L5 1316 aa11.76□□□□□ -0.53
LSM3P5-201ENST00000566307 IQSEC2Q5JU85 1478 aa11.76□□□□□ -0.53
LSM3P5-201ENST00000566307 DCCP43146 1447 aa11.75□□□□□ -0.53
LSM3P5-201ENST00000566307 NEFLP07196 543 aa11.74□□□□□ -0.53
LSM3P5-201ENST00000566307 COG3Q96JB2 828 aa11.74□□□□□ -0.53
LSM3P5-201ENST00000566307 NCKAP5LQ9HCH0 1330 aa11.74□□□□□ -0.53
LSM3P5-201ENST00000566307 LMTK3Q96Q04 1460 aa11.74□□□□□ -0.53
LSM3P5-201ENST00000566307 RGPD8O14715 1765 aaPredicted RBP11.73□□□□□ -0.53
LSM3P5-201ENST00000566307 MAP2P11137 1827 aaKnown RBP11.73□□□□□ -0.53
LSM3P5-201ENST00000566307 CCDC27Q2M243 656 aa11.73□□□□□ -0.53
LSM3P5-201ENST00000566307 RUNDC1Q96C34 613 aa11.73□□□□□ -0.53
LSM3P5-201ENST00000566307 KDM4FA0A1W2PPD8 638 aa11.72□□□□□ -0.53
LSM3P5-201ENST00000566307 NME9Q86XW9 330 aa11.72□□□□□ -0.53
LSM3P5-201ENST00000566307 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.72□□□□□ -0.53
LSM3P5-201ENST00000566307 PNNQ9H307 717 aaKnown RBP11.72□□□□□ -0.53
LSM3P5-201ENST00000566307 POLKQ9UBT6 870 aa11.72□□□□□ -0.53
LSM3P5-201ENST00000566307 KIF24Q5T7B8 1368 aa11.71□□□□□ -0.53
LSM3P5-201ENST00000566307 TNNT2P45379 298 aaPredicted RBP11.71□□□□□ -0.53
LSM3P5-201ENST00000566307 SUPT16HQ9Y5B9 1047 aaKnown RBP11.71□□□□□ -0.53
LSM3P5-201ENST00000566307 DIAPH1O60610 1272 aaKnown RBP11.7□□□□□ -0.54
LSM3P5-201ENST00000566307 TRMT2AQ8IZ69 625 aaKnown RBP11.7□□□□□ -0.54
LSM3P5-201ENST00000566307 KIF1AQ12756 1690 aa11.7□□□□□ -0.54
LSM3P5-201ENST00000566307 MST1RQ04912 1400 aa11.69□□□□□ -0.54
LSM3P5-201ENST00000566307 PIK3C2AO00443 1686 aa11.69□□□□□ -0.54
LSM3P5-201ENST00000566307 GOLGA2Q08379 1002 aa11.69□□□□□ -0.54
LSM3P5-201ENST00000566307 NGDNQ8NEJ9 315 aaKnown RBP11.69□□□□□ -0.54
LSM3P5-201ENST00000566307 PHF8Q9UPP1 1060 aa11.69□□□□□ -0.54
LSM3P5-201ENST00000566307 APAF1O14727 1248 aa11.68□□□□□ -0.54
LSM3P5-201ENST00000566307 FCHSD2O94868 740 aa11.68□□□□□ -0.54
LSM3P5-201ENST00000566307 C19orf44Q9H6X5 657 aa11.68□□□□□ -0.54
LSM3P5-201ENST00000566307 STRCQ7RTU9 1775 aa11.68□□□□□ -0.54
LSM3P5-201ENST00000566307 STRCP1A6NGW2 1772 aa11.67□□□□□ -0.54
LSM3P5-201ENST00000566307 MARF1Q9Y4F3 1742 aaKnown RBP11.67□□□□□ -0.54
LSM3P5-201ENST00000566307 SLFN5Q08AF3 891 aa11.67□□□□□ -0.54
LSM3P5-201ENST00000566307 PROSER2Q86WR7 435 aaPredicted RBP11.67□□□□□ -0.54
LSM3P5-201ENST00000566307 WDR63Q8IWG1 891 aa11.67□□□□□ -0.54
LSM3P5-201ENST00000566307 PLEKHF1Q96S99 279 aa11.67□□□□□ -0.54
LSM3P5-201ENST00000566307 E9PSI1 815 aa11.66□□□□□ -0.54
LSM3P5-201ENST00000566307 U2AF1L5P0DN76 240 aaPredicted RBP11.66□□□□□ -0.54
LSM3P5-201ENST00000566307 U2AF1Q01081 240 aaKnown RBP eCLIP11.66□□□□□ -0.54
LSM3P5-201ENST00000566307 C1orf167Q5SNV9 1468 aa11.65□□□□□ -0.54
LSM3P5-201ENST00000566307 IL13P35225 146 aa11.65□□□□□ -0.54
LSM3P5-201ENST00000566307 DUSP27Q5VZP5 1158 aa11.65□□□□□ -0.54
LSM3P5-201ENST00000566307 WWC1Q8IX03 1113 aa11.65□□□□□ -0.54
LSM3P5-201ENST00000566307 CCDC146Q8IYE0 955 aa11.65□□□□□ -0.54
LSM3P5-201ENST00000566307 TCP11L2Q8N4U5 519 aa11.65□□□□□ -0.54
LSM3P5-201ENST00000566307 PMFBP1Q8TBY8 1022 aa11.65□□□□□ -0.54
LSM3P5-201ENST00000566307 ZRANB1Q9UGI0 708 aa11.65□□□□□ -0.54
LSM3P5-201ENST00000566307 FBXO3Q9UK99 471 aa11.65□□□□□ -0.54
LSM3P5-201ENST00000566307 SBNO1A3KN83 1393 aa11.65□□□□□ -0.55
LSM3P5-201ENST00000566307 PHRF1Q9P1Y6 1649 aaKnown RBP11.64□□□□□ -0.55
LSM3P5-201ENST00000566307 NUTM2FA1L443 756 aa11.64□□□□□ -0.55
LSM3P5-201ENST00000566307 RCAN3Q9UKA8 241 aa11.64□□□□□ -0.55
LSM3P5-201ENST00000566307 EMILIN1Q9Y6C2 1016 aa11.64□□□□□ -0.55
LSM3P5-201ENST00000566307 RTL1A6NKG5 1358 aa11.64□□□□□ -0.55
LSM3P5-201ENST00000566307 TMEM94Q12767 1356 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms