RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 SOBPA7XYQ1 873 aa9.62□□□□□ -0.87
VPS35-205ENST00000563984 EHBP1Q8NDI1 1231 aa9.62□□□□□ -0.87
VPS35-205ENST00000563984 PTCRAQ6ISU1 281 aaPredicted RBP9.6□□□□□ -0.87
VPS35-205ENST00000563984 FDX1P10109 184 aa9.59□□□□□ -0.87
VPS35-205ENST00000563984 NDUFV2P19404 249 aa9.59□□□□□ -0.87
VPS35-205ENST00000563984 GJA5P36382 358 aa9.59□□□□□ -0.87
VPS35-205ENST00000563984 TPRNQ4KMQ1 711 aa9.59□□□□□ -0.87
VPS35-205ENST00000563984 MRPL14Q6P1L8 145 aaKnown RBP9.59□□□□□ -0.87
VPS35-205ENST00000563984 TBC1D2Q9BYX2 928 aa9.59□□□□□ -0.87
VPS35-205ENST00000563984 MOXD2PA6NHM9 499 aa9.58□□□□□ -0.88
VPS35-205ENST00000563984 PCDHGC3Q9UN70 934 aa9.58□□□□□ -0.88
VPS35-205ENST00000563984 PURBQ96QR8 312 aaKnown RBP9.57□□□□□ -0.88
VPS35-205ENST00000563984 C6orf229H3BNL8 230 aa9.55□□□□□ -0.88
VPS35-205ENST00000563984 SH3BP2P78314 561 aa9.55□□□□□ -0.88
VPS35-205ENST00000563984 KDM4CQ9H3R0 1056 aa9.55□□□□□ -0.88
VPS35-205ENST00000563984 ADAMTS8Q9UP79 889 aa9.55□□□□□ -0.88
VPS35-205ENST00000563984 JUNDP17535 347 aa9.54□□□□□ -0.88
VPS35-205ENST00000563984 SCARF1Q14162 830 aa9.54□□□□□ -0.88
VPS35-205ENST00000563984 XP32Q5T750 250 aa9.54□□□□□ -0.88
VPS35-205ENST00000563984 RSBN1LQ6PCB5 846 aaPredicted RBP9.54□□□□□ -0.88
VPS35-205ENST00000563984 RETREG3Q86VR2 466 aa9.54□□□□□ -0.88
VPS35-205ENST00000563984 GPBP1L1Q9HC44 474 aaPredicted RBP9.54□□□□□ -0.88
VPS35-205ENST00000563984 SPTLC1O15269 473 aa9.53□□□□□ -0.88
VPS35-205ENST00000563984 DDRGK1Q96HY6 314 aa9.53□□□□□ -0.88
VPS35-205ENST00000563984 RSPH6AQ9H0K4 717 aa9.53□□□□□ -0.88
VPS35-205ENST00000563984 SPDYE5A6NIY4 337 aa9.52□□□□□ -0.89
VPS35-205ENST00000563984 PPFIA3O75145 1194 aa9.52□□□□□ -0.89
VPS35-205ENST00000563984 RIC3Q7Z5B4 369 aa9.52□□□□□ -0.89
VPS35-205ENST00000563984 TLL2Q9Y6L7 1015 aa9.52□□□□□ -0.89
VPS35-205ENST00000563984 RNF225M0QZC1 329 aaPredicted RBP9.51□□□□□ -0.89
VPS35-205ENST00000563984 TIMP2P16035 220 aa9.51□□□□□ -0.89
VPS35-205ENST00000563984 KRT76Q01546 638 aa9.51□□□□□ -0.89
VPS35-205ENST00000563984 MYSM1Q5VVJ2 828 aa9.51□□□□□ -0.89
VPS35-205ENST00000563984 NNTQ13423 1086 aa9.5□□□□□ -0.89
VPS35-205ENST00000563984 MTMR2Q13614 643 aa9.5□□□□□ -0.89
VPS35-205ENST00000563984 TUSC1Q2TAM9 212 aa9.5□□□□□ -0.89
VPS35-205ENST00000563984 NUDT12Q9BQG2 462 aa9.5□□□□□ -0.89
VPS35-205ENST00000563984 PRPF38BQ5VTL8 546 aaKnown RBP9.49□□□□□ -0.89
VPS35-205ENST00000563984 GPAT2Q6NUI2 795 aa9.49□□□□□ -0.89
VPS35-205ENST00000563984 KLF16Q9BXK1 252 aaPredicted RBP9.49□□□□□ -0.89
VPS35-205ENST00000563984 FAM117AQ9C073 453 aa9.48□□□□□ -0.89
VPS35-205ENST00000563984 IGHA1P01876 353 aa9.47□□□□□ -0.89
VPS35-205ENST00000563984 WDR4P57081 412 aaKnown RBP9.47□□□□□ -0.89
VPS35-205ENST00000563984 NEUROD2Q15784 382 aa9.47□□□□□ -0.89
VPS35-205ENST00000563984 MPNDQ8N594 471 aa9.47□□□□□ -0.89
VPS35-205ENST00000563984 GPR161Q8N6U8 529 aaKnown RBP9.47□□□□□ -0.89
VPS35-205ENST00000563984 PRR7Q8TB68 274 aa9.47□□□□□ -0.89
VPS35-205ENST00000563984 ZBTB3Q9H5J0 574 aa9.47□□□□□ -0.89
VPS35-205ENST00000563984 PCDHB15Q9Y5E8 787 aa9.47□□□□□ -0.89
VPS35-205ENST00000563984 DNMT3AQ9Y6K1 912 aaPredicted RBP9.47□□□□□ -0.89
VPS35-205ENST00000563984 CSPP1Q1MSJ5 1256 aa9.46□□□□□ -0.9
VPS35-205ENST00000563984 DESI1Q6ICB0 168 aa9.46□□□□□ -0.9
VPS35-205ENST00000563984 LIMD1Q9UGP4 676 aa9.46□□□□□ -0.9
VPS35-205ENST00000563984 MAN1A2O60476 641 aa9.45□□□□□ -0.9
VPS35-205ENST00000563984 ADH1CP00326 375 aa9.45□□□□□ -0.9
VPS35-205ENST00000563984 HRCP23327 699 aa9.45□□□□□ -0.9
VPS35-205ENST00000563984 CLK2P49760 499 aaKnown RBP9.45□□□□□ -0.9
VPS35-205ENST00000563984 CNTNAP3BQ96NU0 1288 aa9.45□□□□□ -0.9
VPS35-205ENST00000563984 CNTNAP3Q9BZ76 1288 aa9.45□□□□□ -0.9
VPS35-205ENST00000563984 PLEKHG3A1L390 1219 aa9.44□□□□□ -0.9
VPS35-205ENST00000563984 BRPF1P55201 1214 aaPredicted RBP9.44□□□□□ -0.9
VPS35-205ENST00000563984 SKIV2LQ15477 1246 aaKnown RBP9.44□□□□□ -0.9
VPS35-205ENST00000563984 SH3D19Q5HYK7 790 aa9.44□□□□□ -0.9
VPS35-205ENST00000563984 KRTAP4-8Q9BYQ9 185 aa9.44□□□□□ -0.9
VPS35-205ENST00000563984 CCNYL3P0C7X3 344 aa9.43□□□□□ -0.9
VPS35-205ENST00000563984 LINC01559Q495D7 138 aa9.43□□□□□ -0.9
VPS35-205ENST00000563984 ZNF385CQ66K41 422 aaPredicted RBP9.43□□□□□ -0.9
VPS35-205ENST00000563984 POLR3EQ9NVU0 708 aa9.43□□□□□ -0.9
VPS35-205ENST00000563984 LILRB3O75022 631 aa9.42□□□□□ -0.9
VPS35-205ENST00000563984 IRS1P35568 1242 aa9.42□□□□□ -0.9
VPS35-205ENST00000563984 CABLES1Q8TDN4 633 aa9.42□□□□□ -0.9
VPS35-205ENST00000563984 BAP1Q92560 729 aa9.42□□□□□ -0.9
VPS35-205ENST00000563984 NUTM2BA6NNL0 878 aaPredicted RBP9.41□□□□□ -0.9
VPS35-205ENST00000563984 NUTM2EB1AL46 878 aaPredicted RBP9.41□□□□□ -0.9
VPS35-205ENST00000563984 VARSP26640 1264 aaKnown RBP9.41□□□□□ -0.9
VPS35-205ENST00000563984 PTPRNQ16849 979 aa9.41□□□□□ -0.9
VPS35-205ENST00000563984 NUTM2DQ5VT03 806 aaPredicted RBP9.41□□□□□ -0.9
VPS35-205ENST00000563984 NUTM2AQ8IVF1 878 aaPredicted RBP9.41□□□□□ -0.9
VPS35-205ENST00000563984 UNC93B1Q9H1C4 597 aa9.41□□□□□ -0.9
VPS35-205ENST00000563984 QPCTQ16769 361 aa9.4□□□□□ -0.9
VPS35-205ENST00000563984 C6orf118Q5T5N4 469 aa9.4□□□□□ -0.9
VPS35-205ENST00000563984 CFAP99D6REC4 459 aa9.39□□□□□ -0.91
VPS35-205ENST00000563984 PRKCSHP14314 528 aaPredicted RBP9.39□□□□□ -0.91
VPS35-205ENST00000563984 ZFAND3Q9H8U3 227 aa9.39□□□□□ -0.91
VPS35-205ENST00000563984 GOPCQ9HD26 462 aa9.39□□□□□ -0.91
VPS35-205ENST00000563984 ARHGEF15O94989 841 aa9.38□□□□□ -0.91
VPS35-205ENST00000563984 CTHP32929 405 aa9.38□□□□□ -0.91
VPS35-205ENST00000563984 FOXK2Q01167 660 aa9.38□□□□□ -0.91
VPS35-205ENST00000563984 LYPD8Q6UX82 237 aa9.38□□□□□ -0.91
VPS35-205ENST00000563984 ZNF511Q8NB15 262 aa9.38□□□□□ -0.91
VPS35-205ENST00000563984 TSC1Q92574 1164 aa9.38□□□□□ -0.91
VPS35-205ENST00000563984 EVA1BQ9NVM1 165 aa9.38□□□□□ -0.91
VPS35-205ENST00000563984 KCNH2Q12809 1159 aa9.37□□□□□ -0.91
VPS35-205ENST00000563984 WHAMMQ8TF30 809 aa9.37□□□□□ -0.91
VPS35-205ENST00000563984 COL25A1Q9BXS0 654 aaPredicted RBP9.37□□□□□ -0.91
VPS35-205ENST00000563984 ZIC2O95409 532 aaPredicted RBP9.36□□□□□ -0.91
VPS35-205ENST00000563984 SVOPQ8N4V2 548 aa9.36□□□□□ -0.91
VPS35-205ENST00000563984 IL27Q8NEV9 243 aa9.36□□□□□ -0.91
VPS35-205ENST00000563984 ITPKCQ96DU7 683 aa9.36□□□□□ -0.91
VPS35-205ENST00000563984 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms