RNA–Protein interactions for RNA: ENST00000563226.1

SMPD3-203, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 1 (best) BASIC

Gene SMPD3, Length 2,093 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-203ENST00000563226 ITSN1Q15811 1721 aa25.1■■□□□ 1.61
SMPD3-203ENST00000563226 EDC4Q6P2E9 1401 aaKnown RBP25.1■■□□□ 1.61
SMPD3-203ENST00000563226 E9PSI1 815 aa25.09■■□□□ 1.61
SMPD3-203ENST00000563226 NKTRP30414 1462 aaKnown RBP25.09■■□□□ 1.61
SMPD3-203ENST00000563226 CCDC61Q9Y6R9 512 aa25.09■■□□□ 1.61
SMPD3-203ENST00000563226 FBLN1P23142 703 aa25.08■■□□□ 1.61
SMPD3-203ENST00000563226 THEMISQ8N1K5 641 aaPredicted RBP25.07■■□□□ 1.6
SMPD3-203ENST00000563226 MAP2P11137 1827 aaKnown RBP25.07■■□□□ 1.6
SMPD3-203ENST00000563226 PHF23Q9BUL5 403 aaPredicted RBP25.06■■□□□ 1.6
SMPD3-203ENST00000563226 TOPAZ1Q8N9V7 1692 aa25.06■■□□□ 1.6
SMPD3-203ENST00000563226 U2SURPO15042 1029 aaKnown RBP25.06■■□□□ 1.6
SMPD3-203ENST00000563226 C20orf194Q5TEA3 1177 aa25.06■■□□□ 1.6
SMPD3-203ENST00000563226 NME9Q86XW9 330 aa25.06■■□□□ 1.6
SMPD3-203ENST00000563226 CEP170BQ9Y4F5 1589 aaPredicted RBP25.06■■□□□ 1.6
SMPD3-203ENST00000563226 PNPLA6Q8IY17 1366 aa25.05■■□□□ 1.6
SMPD3-203ENST00000563226 ZRANB1Q9UGI0 708 aa25.05■■□□□ 1.6
SMPD3-203ENST00000563226 CRBNQ96SW2 442 aa25.05■■□□□ 1.6
SMPD3-203ENST00000563226 RBM19Q9Y4C8 960 aaKnown RBP25.05■■□□□ 1.6
SMPD3-203ENST00000563226 AMOTL2Q9Y2J4 779 aa25.04■■□□□ 1.6
SMPD3-203ENST00000563226 TBX22Q9Y458 520 aa25.04■■□□□ 1.6
SMPD3-203ENST00000563226 POLKQ9UBT6 870 aa25.02■■□□□ 1.6
SMPD3-203ENST00000563226 DIP2AQ14689 1571 aa25.02■■□□□ 1.6
SMPD3-203ENST00000563226 NUTM2FA1L443 756 aa25.01■■□□□ 1.59
SMPD3-203ENST00000563226 PLEKHF1Q96S99 279 aa25.01■■□□□ 1.59
SMPD3-203ENST00000563226 DIAPH1O60610 1272 aaKnown RBP25■■□□□ 1.59
SMPD3-203ENST00000563226 NRKQ7Z2Y5 1582 aa25■■□□□ 1.59
SMPD3-203ENST00000563226 PTCH1Q13635 1447 aa24.99■■□□□ 1.59
SMPD3-203ENST00000563226 CCDC27Q2M243 656 aa24.99■■□□□ 1.59
SMPD3-203ENST00000563226 XRN1Q8IZH2 1706 aaKnown RBP24.99■■□□□ 1.59
SMPD3-203ENST00000563226 PPM1GO15355 546 aaPredicted RBP24.98■■□□□ 1.59
SMPD3-203ENST00000563226 ADAMTSL3P82987 1691 aa24.97■■□□□ 1.59
SMPD3-203ENST00000563226 BCAR3O75815 825 aa24.97■■□□□ 1.59
SMPD3-203ENST00000563226 WDR63Q8IWG1 891 aa24.97■■□□□ 1.59
SMPD3-203ENST00000563226 EMILIN1Q9Y6C2 1016 aa24.97■■□□□ 1.59
SMPD3-203ENST00000563226 ZNF692Q9BU19 519 aaPredicted RBP24.95■■□□□ 1.58
SMPD3-203ENST00000563226 LRRC7Q96NW7 1537 aa24.94■■□□□ 1.58
SMPD3-203ENST00000563226 ACEP12821 1306 aa24.94■■□□□ 1.58
SMPD3-203ENST00000563226 RGPD8O14715 1765 aaPredicted RBP24.94■■□□□ 1.58
SMPD3-203ENST00000563226 NCBP3Q53F19 620 aaKnown RBP24.93■■□□□ 1.58
SMPD3-203ENST00000563226 ZNF142P52746 1687 aaPredicted RBP24.93■■□□□ 1.58
SMPD3-203ENST00000563226 COG3Q96JB2 828 aa24.93■■□□□ 1.58
SMPD3-203ENST00000563226 PLEKHG3A1L390 1219 aa24.92■■□□□ 1.58
SMPD3-203ENST00000563226 TMPOP42166 694 aaKnown RBP24.92■■□□□ 1.58
SMPD3-203ENST00000563226 AATKQ6ZMQ8 1374 aa24.92■■□□□ 1.58
SMPD3-203ENST00000563226 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.92■■□□□ 1.58
SMPD3-203ENST00000563226 CDK12Q9NYV4 1490 aaPredicted RBP24.91■■□□□ 1.58
SMPD3-203ENST00000563226 MAPK8IP3Q9UPT6 1336 aa24.91■■□□□ 1.58
SMPD3-203ENST00000563226 TTC21BQ7Z4L5 1316 aa24.9■■□□□ 1.58
SMPD3-203ENST00000563226 TRIM35Q9UPQ4 493 aa24.9■■□□□ 1.58
SMPD3-203ENST00000563226 USP6P35125 1406 aa24.89■■□□□ 1.58
SMPD3-203ENST00000563226 RRS1Q15050 365 aaKnown RBP24.89■■□□□ 1.58
SMPD3-203ENST00000563226 KCNA6P17658 529 aa24.89■■□□□ 1.57
SMPD3-203ENST00000563226 RSPH6AQ9H0K4 717 aa24.87■■□□□ 1.57
SMPD3-203ENST00000563226 OVOS2A0A0J9YW53 1432 aa24.86■■□□□ 1.57
SMPD3-203ENST00000563226 OVOS2Q6IE36 1432 aa24.86■■□□□ 1.57
SMPD3-203ENST00000563226 IL13P35225 146 aa24.85■■□□□ 1.57
SMPD3-203ENST00000563226 FCHSD2O94868 740 aa24.85■■□□□ 1.57
SMPD3-203ENST00000563226 PMFBP1Q8TBY8 1022 aa24.85■■□□□ 1.57
SMPD3-203ENST00000563226 NALCNQ8IZF0 1738 aa24.85■■□□□ 1.57
SMPD3-203ENST00000563226 SSH2Q76I76 1423 aa24.84■■□□□ 1.57
SMPD3-203ENST00000563226 PRKAR2BP31323 418 aa24.84■■□□□ 1.57
SMPD3-203ENST00000563226 HMOX1P09601 288 aa24.84■■□□□ 1.57
SMPD3-203ENST00000563226 PIK3R4Q99570 1358 aa24.84■■□□□ 1.57
SMPD3-203ENST00000563226 RARSP54136 660 aaKnown RBP24.83■■□□□ 1.57
SMPD3-203ENST00000563226 RIPK4P57078 832 aa24.83■■□□□ 1.57
SMPD3-203ENST00000563226 MYH16Q9H6N6 1097 aa24.83■■□□□ 1.57
SMPD3-203ENST00000563226 CHD2O14647 1828 aaKnown RBP24.83■■□□□ 1.56
SMPD3-203ENST00000563226 TSR2Q969E8 191 aaKnown RBP24.82■■□□□ 1.56
SMPD3-203ENST00000563226 PNNQ9H307 717 aaKnown RBP24.82■■□□□ 1.56
SMPD3-203ENST00000563226 DNAJC5Q9H3Z4 198 aa24.82■■□□□ 1.56
SMPD3-203ENST00000563226 SETD1BQ9UPS6 1966 aaKnown RBP24.81■■□□□ 1.56
SMPD3-203ENST00000563226 ANKLE2Q86XL3 938 aa24.81■■□□□ 1.56
SMPD3-203ENST00000563226 FANCIQ9NVI1 1328 aa24.81■■□□□ 1.56
SMPD3-203ENST00000563226 FMN2Q9NZ56 1722 aa24.81■■□□□ 1.56
SMPD3-203ENST00000563226 PHACTR3Q96KR7 559 aa24.8■■□□□ 1.56
SMPD3-203ENST00000563226 PEAK1Q9H792 1746 aa24.79■■□□□ 1.56
SMPD3-203ENST00000563226 BCL2L13Q9BXK5 485 aa24.77■■□□□ 1.56
SMPD3-203ENST00000563226 KDM2BQ8NHM5 1336 aa24.76■■□□□ 1.55
SMPD3-203ENST00000563226 NGDNQ8NEJ9 315 aaKnown RBP24.76■■□□□ 1.55
SMPD3-203ENST00000563226 FRAT1Q92837 279 aaPredicted RBP24.76■■□□□ 1.55
SMPD3-203ENST00000563226 ANKARQ7Z5J8 1434 aa24.75■■□□□ 1.55
SMPD3-203ENST00000563226 USP31Q70CQ4 1352 aa24.75■■□□□ 1.55
SMPD3-203ENST00000563226 IL16Q14005 1332 aa24.75■■□□□ 1.55
SMPD3-203ENST00000563226 CANXP27824 592 aaKnown RBP24.75■■□□□ 1.55
SMPD3-203ENST00000563226 PANK1Q8TE04 598 aa24.75■■□□□ 1.55
SMPD3-203ENST00000563226 PIK3C2AO00443 1686 aa24.75■■□□□ 1.55
SMPD3-203ENST00000563226 EXOSC9Q06265 439 aaKnown RBP24.74■■□□□ 1.55
SMPD3-203ENST00000563226 PDE3AQ14432 1141 aa24.74■■□□□ 1.55
SMPD3-203ENST00000563226 SKAP1Q86WV1 359 aa24.74■■□□□ 1.55
SMPD3-203ENST00000563226 DLG5Q8TDM6 1919 aa24.74■■□□□ 1.55
SMPD3-203ENST00000563226 TTC21AQ8NDW8 1320 aa24.73■■□□□ 1.55
SMPD3-203ENST00000563226 SOX12O15370 315 aa24.73■■□□□ 1.55
SMPD3-203ENST00000563226 NFE2L2Q16236 605 aa24.73■■□□□ 1.55
SMPD3-203ENST00000563226 RBM33Q96EV2 1170 aaKnown RBP24.73■■□□□ 1.55
SMPD3-203ENST00000563226 TNNQ9UQP3 1299 aa24.73■■□□□ 1.55
SMPD3-203ENST00000563226 NEFMP07197 916 aa24.72■■□□□ 1.55
SMPD3-203ENST00000563226 EIF4A2Q14240 407 aaKnown RBP24.71■■□□□ 1.55
SMPD3-203ENST00000563226 COG6Q9Y2V7 657 aa24.71■■□□□ 1.55
SMPD3-203ENST00000563226 THUMPD2Q9BTF0 503 aaKnown RBP24.69■■□□□ 1.54
SMPD3-203ENST00000563226 MARF1Q9Y4F3 1742 aaKnown RBP24.69■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms