RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 OVOS2A0A0J9YW53 1432 aa18.84■□□□□ 0.61
CLK3-209ENST00000562670 OVOS2Q6IE36 1432 aa18.84■□□□□ 0.61
CLK3-209ENST00000562670 TTC21BQ7Z4L5 1316 aa18.84■□□□□ 0.61
CLK3-209ENST00000562670 MORC1Q86VD1 984 aa18.84■□□□□ 0.61
CLK3-209ENST00000562670 NGDNQ8NEJ9 315 aaKnown RBP18.83■□□□□ 0.6
CLK3-209ENST00000562670 PIK3C2AO00443 1686 aa18.82■□□□□ 0.6
CLK3-209ENST00000562670 INSRP06213 1382 aa18.82■□□□□ 0.6
CLK3-209ENST00000562670 USP31Q70CQ4 1352 aa18.82■□□□□ 0.6
CLK3-209ENST00000562670 SMG6Q86US8 1419 aaKnown RBP18.82■□□□□ 0.6
CLK3-209ENST00000562670 PMFBP1Q8TBY8 1022 aa18.81■□□□□ 0.6
CLK3-209ENST00000562670 AATKQ6ZMQ8 1374 aa18.81■□□□□ 0.6
CLK3-209ENST00000562670 TRPM3Q9HCF6 1732 aaPredicted RBP18.8■□□□□ 0.6
CLK3-209ENST00000562670 CCDC184Q52MB2 194 aa18.8■□□□□ 0.6
CLK3-209ENST00000562670 CNGB1Q14028 1251 aaPredicted RBP18.79■□□□□ 0.6
CLK3-209ENST00000562670 ESCO1Q5FWF5 840 aa18.79■□□□□ 0.6
CLK3-209ENST00000562670 GGNBP2Q9H3C7 697 aa18.79■□□□□ 0.6
CLK3-209ENST00000562670 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.78■□□□□ 0.6
CLK3-209ENST00000562670 NME9Q86XW9 330 aa18.77■□□□□ 0.6
CLK3-209ENST00000562670 PNISRQ8TF01 805 aaKnown RBP18.77■□□□□ 0.6
CLK3-209ENST00000562670 MARF1Q9Y4F3 1742 aaKnown RBP18.77■□□□□ 0.59
CLK3-209ENST00000562670 COG3Q96JB2 828 aa18.76■□□□□ 0.59
CLK3-209ENST00000562670 ORAI2Q96SN7 254 aa18.75■□□□□ 0.59
CLK3-209ENST00000562670 ALS2Q96Q42 1657 aa18.74■□□□□ 0.59
CLK3-209ENST00000562670 IQSEC2Q5JU85 1478 aa18.74■□□□□ 0.59
CLK3-209ENST00000562670 CDK12Q9NYV4 1490 aaPredicted RBP18.74■□□□□ 0.59
CLK3-209ENST00000562670 AEBP2Q6ZN18 517 aaPredicted RBP18.74■□□□□ 0.59
CLK3-209ENST00000562670 NPHP3Q7Z494 1330 aa18.74■□□□□ 0.59
CLK3-209ENST00000562670 COL3A1P02461 1466 aaPredicted RBP18.73■□□□□ 0.59
CLK3-209ENST00000562670 PXDNQ92626 1479 aa18.73■□□□□ 0.59
CLK3-209ENST00000562670 SBNO1A3KN83 1393 aa18.73■□□□□ 0.59
CLK3-209ENST00000562670 PNPLA6Q8IY17 1366 aa18.73■□□□□ 0.59
CLK3-209ENST00000562670 SHPRHQ149N8 1683 aa18.73■□□□□ 0.59
CLK3-209ENST00000562670 NHSL1Q5SYE7 1610 aa18.72■□□□□ 0.59
CLK3-209ENST00000562670 SLIT3O75094 1523 aa18.71■□□□□ 0.59
CLK3-209ENST00000562670 PSME1Q06323 249 aa18.71■□□□□ 0.59
CLK3-209ENST00000562670 BLMP54132 1417 aaPredicted RBP18.7■□□□□ 0.58
CLK3-209ENST00000562670 MED1Q15648 1581 aaPredicted RBP18.7■□□□□ 0.58
CLK3-209ENST00000562670 BRINP3Q76B58 766 aa18.7■□□□□ 0.58
CLK3-209ENST00000562670 CFAP53Q96M91 514 aa18.7■□□□□ 0.58
CLK3-209ENST00000562670 SLAIN2Q9P270 581 aa18.7■□□□□ 0.58
CLK3-209ENST00000562670 KIF24Q5T7B8 1368 aa18.69■□□□□ 0.58
CLK3-209ENST00000562670 FOXO3O43524 673 aa18.69■□□□□ 0.58
CLK3-209ENST00000562670 MTHFSP49914 203 aa18.69■□□□□ 0.58
CLK3-209ENST00000562670 PHRF1Q9P1Y6 1649 aaKnown RBP18.69■□□□□ 0.58
CLK3-209ENST00000562670 TNS3Q68CZ2 1445 aa18.68■□□□□ 0.58
CLK3-209ENST00000562670 NFAT5O94916 1531 aa18.68■□□□□ 0.58
CLK3-209ENST00000562670 MAP2P11137 1827 aaKnown RBP18.67■□□□□ 0.58
CLK3-209ENST00000562670 TNNT2P45379 298 aaPredicted RBP18.67■□□□□ 0.58
CLK3-209ENST00000562670 ZRANB1Q9UGI0 708 aa18.67■□□□□ 0.58
CLK3-209ENST00000562670 USP19O94966 1318 aa18.67■□□□□ 0.58
CLK3-209ENST00000562670 KRT28Q7Z3Y7 464 aa18.66■□□□□ 0.58
CLK3-209ENST00000562670 FAM9BQ8IZU0 186 aa18.66■□□□□ 0.58
CLK3-209ENST00000562670 POLKQ9UBT6 870 aa18.66■□□□□ 0.58
CLK3-209ENST00000562670 AHDC1Q5TGY3 1603 aaPredicted RBP18.66■□□□□ 0.58
CLK3-209ENST00000562670 ABTB2Q8N961 1025 aa18.65■□□□□ 0.58
CLK3-209ENST00000562670 ARHGEF10O15013 1369 aa18.65■□□□□ 0.58
CLK3-209ENST00000562670 NLRP6P59044 892 aa18.64■□□□□ 0.57
CLK3-209ENST00000562670 SOS2Q07890 1332 aaPredicted RBP18.64■□□□□ 0.57
CLK3-209ENST00000562670 RTL1A6NKG5 1358 aa18.64■□□□□ 0.57
CLK3-209ENST00000562670 CRYBG1Q9Y4K1 1723 aa18.63■□□□□ 0.57
CLK3-209ENST00000562670 PAK3O75914 559 aaPredicted RBP18.63■□□□□ 0.57
CLK3-209ENST00000562670 WDR43Q15061 677 aaKnown RBP eCLIP18.63■□□□□ 0.57
CLK3-209ENST00000562670 YTHDC1Q96MU7 727 aaKnown RBP18.63■□□□□ 0.57
CLK3-209ENST00000562670 ROBO1Q9Y6N7 1651 aa18.63■□□□□ 0.57
CLK3-209ENST00000562670 PEAK1Q9H792 1746 aa18.63■□□□□ 0.57
CLK3-209ENST00000562670 ABCC6O95255 1503 aa18.61■□□□□ 0.57
CLK3-209ENST00000562670 FLT4P35916 1363 aa18.61■□□□□ 0.57
CLK3-209ENST00000562670 SPATA31A3Q5VYP0 1347 aa18.61■□□□□ 0.57
CLK3-209ENST00000562670 KCNH5Q8NCM2 988 aa18.61■□□□□ 0.57
CLK3-209ENST00000562670 EMILIN1Q9Y6C2 1016 aa18.59■□□□□ 0.57
CLK3-209ENST00000562670 MAP3K19Q56UN5 1328 aa18.58■□□□□ 0.57
CLK3-209ENST00000562670 ZBED9Q6R2W3 1325 aa18.58■□□□□ 0.57
CLK3-209ENST00000562670 CENPBP07199 599 aaPredicted RBP18.58■□□□□ 0.56
CLK3-209ENST00000562670 ADAMTS8Q9UP79 889 aa18.58■□□□□ 0.56
CLK3-209ENST00000562670 NUDCQ9Y266 331 aa18.58■□□□□ 0.56
CLK3-209ENST00000562670 LTN1O94822 1766 aa18.58■□□□□ 0.56
CLK3-209ENST00000562670 DIAPH1O60610 1272 aaKnown RBP18.57■□□□□ 0.56
CLK3-209ENST00000562670 HNRNPUQ00839 825 aaKnown RBP eCLIP18.57■□□□□ 0.56
CLK3-209ENST00000562670 XPCQ01831 940 aaPredicted RBP18.57■□□□□ 0.56
CLK3-209ENST00000562670 RRS1Q15050 365 aaKnown RBP18.57■□□□□ 0.56
CLK3-209ENST00000562670 RGPD1P0DJD0 1748 aa18.57■□□□□ 0.56
CLK3-209ENST00000562670 ABCA3Q99758 1704 aa18.54■□□□□ 0.56
CLK3-209ENST00000562670 FBLN1P23142 703 aa18.54■□□□□ 0.56
CLK3-209ENST00000562670 NGEFQ8N5V2 710 aa18.54■□□□□ 0.56
CLK3-209ENST00000562670 DDX17Q92841 729 aaKnown RBP18.54■□□□□ 0.56
CLK3-209ENST00000562670 COL22A1Q8NFW1 1626 aaPredicted RBP18.53■□□□□ 0.56
CLK3-209ENST00000562670 TOM1O60784 492 aa18.53■□□□□ 0.56
CLK3-209ENST00000562670 GCP02774 474 aa18.53■□□□□ 0.56
CLK3-209ENST00000562670 IL13P35225 146 aa18.53■□□□□ 0.56
CLK3-209ENST00000562670 NUTM2GQ5VZR2 741 aa18.53■□□□□ 0.56
CLK3-209ENST00000562670 NCBP3Q53F19 620 aaKnown RBP18.52■□□□□ 0.56
CLK3-209ENST00000562670 CPDO75976 1380 aa18.52■□□□□ 0.55
CLK3-209ENST00000562670 COL16A1Q07092 1604 aaPredicted RBP18.52■□□□□ 0.55
CLK3-209ENST00000562670 PPM1GO15355 546 aaPredicted RBP18.51■□□□□ 0.55
CLK3-209ENST00000562670 ARHGEF25Q86VW2 580 aa18.51■□□□□ 0.55
CLK3-209ENST00000562670 HOXC9P31274 260 aa18.5■□□□□ 0.55
CLK3-209ENST00000562670 AMPHP49418 695 aa18.49■□□□□ 0.55
CLK3-209ENST00000562670 IP6K1Q92551 441 aa18.49■□□□□ 0.55
CLK3-209ENST00000562670 PNNQ9H307 717 aaKnown RBP18.49■□□□□ 0.55
CLK3-209ENST00000562670 CAMTA1Q9Y6Y1 1673 aa18.48■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms