RNA–Protein interactions for RNA: ENST00000562298.1

VPS9D1-AS1-201, VPS9D1 antisense RNA 1, humanhuman

TSL 1 (best)

Gene VPS9D1-AS1, Length 931 nt, Biotype antisense RNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-AS1-201ENST00000562298 NGDNQ8NEJ9 315 aaKnown RBP24.36■■□□□ 1.49
VPS9D1-AS1-201ENST00000562298 CCDC9Q9Y3X0 531 aaKnown RBP24.36■■□□□ 1.49
VPS9D1-AS1-201ENST00000562298 NUDT16Q96DE0 195 aaKnown RBP24.34■■□□□ 1.49
VPS9D1-AS1-201ENST00000562298 BTG4Q9NY30 223 aa24.34■■□□□ 1.49
VPS9D1-AS1-201ENST00000562298 TOPAZ1Q8N9V7 1692 aa24.34■■□□□ 1.49
VPS9D1-AS1-201ENST00000562298 PAK3O75914 559 aaPredicted RBP24.32■■□□□ 1.48
VPS9D1-AS1-201ENST00000562298 ZRANB1Q9UGI0 708 aa24.32■■□□□ 1.48
VPS9D1-AS1-201ENST00000562298 CDK19Q9BWU1 502 aa24.3■■□□□ 1.48
VPS9D1-AS1-201ENST00000562298 PHRF1Q9P1Y6 1649 aaKnown RBP24.3■■□□□ 1.48
VPS9D1-AS1-201ENST00000562298 KRT27Q7Z3Y8 459 aa24.29■■□□□ 1.48
VPS9D1-AS1-201ENST00000562298 FAM98CQ17RN3 349 aaKnown RBP24.28■■□□□ 1.48
VPS9D1-AS1-201ENST00000562298 NBPF1Q3BBV0 1214 aa24.28■■□□□ 1.48
VPS9D1-AS1-201ENST00000562298 POLR3AO14802 1390 aaPredicted RBP24.28■■□□□ 1.48
VPS9D1-AS1-201ENST00000562298 DEFB132Q7Z7B7 95 aa24.27■■□□□ 1.48
VPS9D1-AS1-201ENST00000562298 A0A0G2JS52 829 aa24.25■■□□□ 1.47
VPS9D1-AS1-201ENST00000562298 MYT1Q01538 1121 aa24.25■■□□□ 1.47
VPS9D1-AS1-201ENST00000562298 PRDM11Q9NQV5 511 aa24.24■■□□□ 1.47
VPS9D1-AS1-201ENST00000562298 ACEP12821 1306 aa24.24■■□□□ 1.47
VPS9D1-AS1-201ENST00000562298 SPATA31A5Q5VU36 1347 aa24.24■■□□□ 1.47
VPS9D1-AS1-201ENST00000562298 SPATA31A7Q8IWB4 1347 aa24.24■■□□□ 1.47
VPS9D1-AS1-201ENST00000562298 KIAA0232Q92628 1395 aa24.24■■□□□ 1.47
VPS9D1-AS1-201ENST00000562298 THSD7AQ9UPZ6 1657 aa24.24■■□□□ 1.47
VPS9D1-AS1-201ENST00000562298 CCDC61Q9Y6R9 512 aa24.23■■□□□ 1.47
VPS9D1-AS1-201ENST00000562298 SF3B2Q13435 895 aaKnown RBP24.22■■□□□ 1.47
VPS9D1-AS1-201ENST00000562298 PLEKHG3A1L390 1219 aa24.21■■□□□ 1.47
VPS9D1-AS1-201ENST00000562298 NBPF8Q3BBV2 869 aa24.21■■□□□ 1.47
VPS9D1-AS1-201ENST00000562298 NUTM2GQ5VZR2 741 aa24.21■■□□□ 1.47
VPS9D1-AS1-201ENST00000562298 CHRNA2Q15822 529 aa24.2■■□□□ 1.46
VPS9D1-AS1-201ENST00000562298 NRKQ7Z2Y5 1582 aa24.2■■□□□ 1.46
VPS9D1-AS1-201ENST00000562298 QRICH2Q9H0J4 1663 aa24.18■■□□□ 1.46
VPS9D1-AS1-201ENST00000562298 CENPJQ9HC77 1338 aaPredicted RBP24.17■■□□□ 1.46
VPS9D1-AS1-201ENST00000562298 ZC3H6P61129 1189 aaKnown RBP24.17■■□□□ 1.46
VPS9D1-AS1-201ENST00000562298 PPIP5K1Q6PFW1 1433 aa24.17■■□□□ 1.46
VPS9D1-AS1-201ENST00000562298 SPATA31A1Q5TZJ5 1347 aa24.16■■□□□ 1.46
VPS9D1-AS1-201ENST00000562298 FAM182BQ5T319 152 aa24.16■■□□□ 1.46
VPS9D1-AS1-201ENST00000562298 RGPD1P0DJD0 1748 aa24.15■■□□□ 1.46
VPS9D1-AS1-201ENST00000562298 SRPK2P78362 688 aaKnown RBP24.14■■□□□ 1.45
VPS9D1-AS1-201ENST00000562298 ABTB2Q8N961 1025 aa24.14■■□□□ 1.45
VPS9D1-AS1-201ENST00000562298 CABP2Q9NPB3 220 aa24.14■■□□□ 1.45
VPS9D1-AS1-201ENST00000562298 STRN4Q9NRL3 753 aa24.14■■□□□ 1.45
VPS9D1-AS1-201ENST00000562298 L3MBTL2Q969R5 705 aa24.13■■□□□ 1.45
VPS9D1-AS1-201ENST00000562298 LMO7Q8WWI1 1683 aa24.13■■□□□ 1.45
VPS9D1-AS1-201ENST00000562298 USP19O94966 1318 aa24.12■■□□□ 1.45
VPS9D1-AS1-201ENST00000562298 BAG6P46379 1132 aa24.12■■□□□ 1.45
VPS9D1-AS1-201ENST00000562298 TRPM1Q7Z4N2 1603 aa24.12■■□□□ 1.45
VPS9D1-AS1-201ENST00000562298 TNS1Q9HBL0 1735 aaKnown RBP24.12■■□□□ 1.45
VPS9D1-AS1-201ENST00000562298 CAMTA1Q9Y6Y1 1673 aa24.11■■□□□ 1.45
VPS9D1-AS1-201ENST00000562298 SSH2Q76I76 1423 aa24.1■■□□□ 1.45
VPS9D1-AS1-201ENST00000562298 CPDO75976 1380 aa24.1■■□□□ 1.45
VPS9D1-AS1-201ENST00000562298 SIN3AQ96ST3 1273 aa24.09■■□□□ 1.45
VPS9D1-AS1-201ENST00000562298 USP35Q9P2H5 1018 aa24.07■■□□□ 1.44
VPS9D1-AS1-201ENST00000562298 EN1Q05925 392 aaPredicted RBP24.06■■□□□ 1.44
VPS9D1-AS1-201ENST00000562298 CABP1Q9NZU7 370 aa24.06■■□□□ 1.44
VPS9D1-AS1-201ENST00000562298 DISP2A7MBM2 1401 aa24.06■■□□□ 1.44
VPS9D1-AS1-201ENST00000562298 USP6P35125 1406 aa24.06■■□□□ 1.44
VPS9D1-AS1-201ENST00000562298 GCP02774 474 aa24.05■■□□□ 1.44
VPS9D1-AS1-201ENST00000562298 EVA1CP58658 441 aa24.05■■□□□ 1.44
VPS9D1-AS1-201ENST00000562298 LARP1Q6PKG0 1096 aaKnown RBP24.05■■□□□ 1.44
VPS9D1-AS1-201ENST00000562298 NLRP13Q86W25 1043 aa24.05■■□□□ 1.44
VPS9D1-AS1-201ENST00000562298 BRD4O60885 1362 aaPredicted RBP24.04■■□□□ 1.44
VPS9D1-AS1-201ENST00000562298 LRP5O75197 1615 aa24.04■■□□□ 1.44
VPS9D1-AS1-201ENST00000562298 BARGINQ6ZT62 677 aa24.04■■□□□ 1.44
VPS9D1-AS1-201ENST00000562298 PSDA5PKW4 1024 aaPredicted RBP24.03■■□□□ 1.44
VPS9D1-AS1-201ENST00000562298 PIK3C2AO00443 1686 aa24.02■■□□□ 1.44
VPS9D1-AS1-201ENST00000562298 COL5A2P05997 1499 aaPredicted RBP24.02■■□□□ 1.44
VPS9D1-AS1-201ENST00000562298 SLIT3O75094 1523 aa24.02■■□□□ 1.44
VPS9D1-AS1-201ENST00000562298 TRIM37O94972 964 aa24■■□□□ 1.43
VPS9D1-AS1-201ENST00000562298 NEUROD1Q13562 356 aa24■■□□□ 1.43
VPS9D1-AS1-201ENST00000562298 FAM196AQ6ZSG2 479 aa24■■□□□ 1.43
VPS9D1-AS1-201ENST00000562298 EVC2Q86UK5 1308 aa24■■□□□ 1.43
VPS9D1-AS1-201ENST00000562298 ROCK2O75116 1388 aaKnown RBP24■■□□□ 1.43
VPS9D1-AS1-201ENST00000562298 TCP11L2Q8N4U5 519 aa23.99■■□□□ 1.43
VPS9D1-AS1-201ENST00000562298 NLRP6P59044 892 aa23.98■■□□□ 1.43
VPS9D1-AS1-201ENST00000562298 EZH2Q15910 746 aaKnown RBP23.98■■□□□ 1.43
VPS9D1-AS1-201ENST00000562298 PARP4Q9UKK3 1724 aaKnown RBP23.97■■□□□ 1.43
VPS9D1-AS1-201ENST00000562298 AKAP12Q02952 1782 aa23.96■■□□□ 1.43
VPS9D1-AS1-201ENST00000562298 PDE3BQ13370 1112 aa23.96■■□□□ 1.43
VPS9D1-AS1-201ENST00000562298 THRAP3Q9Y2W1 955 aaKnown RBP23.96■■□□□ 1.43
VPS9D1-AS1-201ENST00000562298 CRB1P82279 1406 aa23.95■■□□□ 1.42
VPS9D1-AS1-201ENST00000562298 AATKQ6ZMQ8 1374 aa23.95■■□□□ 1.42
VPS9D1-AS1-201ENST00000562298 CAMKK2Q96RR4 588 aa23.95■■□□□ 1.42
VPS9D1-AS1-201ENST00000562298 COL18A1P39060 1754 aa23.95■■□□□ 1.42
VPS9D1-AS1-201ENST00000562298 ZBTB7CA1YPR0 619 aa23.94■■□□□ 1.42
VPS9D1-AS1-201ENST00000562298 RREB1Q92766 1687 aa23.92■■□□□ 1.42
VPS9D1-AS1-201ENST00000562298 APBA3O96018 575 aa23.92■■□□□ 1.42
VPS9D1-AS1-201ENST00000562298 R3HDM1Q15032 1099 aaKnown RBP23.92■■□□□ 1.42
VPS9D1-AS1-201ENST00000562298 PARD3Q8TEW0 1356 aa23.91■■□□□ 1.42
VPS9D1-AS1-201ENST00000562298 TTC21BQ7Z4L5 1316 aa23.9■■□□□ 1.42
VPS9D1-AS1-201ENST00000562298 LRRC37A3O60309 1634 aa23.9■■□□□ 1.42
VPS9D1-AS1-201ENST00000562298 CPSF1Q10570 1443 aaKnown RBP23.9■■□□□ 1.42
VPS9D1-AS1-201ENST00000562298 ZNF692Q9BU19 519 aaPredicted RBP23.89■■□□□ 1.41
VPS9D1-AS1-201ENST00000562298 NUP188Q5SRE5 1749 aa23.89■■□□□ 1.41
VPS9D1-AS1-201ENST00000562298 PEAK1Q9H792 1746 aa23.89■■□□□ 1.41
VPS9D1-AS1-201ENST00000562298 AXIN2Q9Y2T1 843 aa23.88■■□□□ 1.41
VPS9D1-AS1-201ENST00000562298 WNK3Q9BYP7 1800 aa23.88■■□□□ 1.41
VPS9D1-AS1-201ENST00000562298 MON2Q7Z3U7 1717 aa23.87■■□□□ 1.41
VPS9D1-AS1-201ENST00000562298 ARHGEF25Q86VW2 580 aa23.86■■□□□ 1.41
VPS9D1-AS1-201ENST00000562298 SBNO2Q9Y2G9 1366 aa23.86■■□□□ 1.41
VPS9D1-AS1-201ENST00000562298 RGPD5Q99666 1765 aa23.86■■□□□ 1.41
VPS9D1-AS1-201ENST00000562298 TTC21AQ8NDW8 1320 aa23.85■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms