RNA–Protein interactions for RNA: ENST00000561781.1

RAB40C-206, Transcript of RAB40C, member RAS oncogene family, humanhuman

TSL 2

Gene RAB40C, Length 2,439 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40C-206ENST00000561781 ZSCAN20P17040 1043 aaPredicted RBP23.42■■□□□ 1.34
RAB40C-206ENST00000561781 PPP4R3BQ5MIZ7 849 aa23.42■■□□□ 1.34
RAB40C-206ENST00000561781 ANP32BQ92688 251 aaKnown RBP23.42■■□□□ 1.34
RAB40C-206ENST00000561781 CCDC94Q9BW85 323 aaPredicted RBP23.42■■□□□ 1.34
RAB40C-206ENST00000561781 CHMP4BQ9H444 224 aaKnown RBP23.42■■□□□ 1.34
RAB40C-206ENST00000561781 SPRYD3Q8NCJ5 442 aa23.41■■□□□ 1.34
RAB40C-206ENST00000561781 GTPBP4Q9BZE4 634 aaKnown RBP23.41■■□□□ 1.34
RAB40C-206ENST00000561781 KDM2AQ9Y2K7 1162 aa23.41■■□□□ 1.34
RAB40C-206ENST00000561781 SETD1BQ9UPS6 1966 aaKnown RBP23.41■■□□□ 1.34
RAB40C-206ENST00000561781 A2ML1A8K2U0 1454 aa23.4■■□□□ 1.34
RAB40C-206ENST00000561781 GOLGA2Q08379 1002 aa23.39■■□□□ 1.34
RAB40C-206ENST00000561781 UBR1Q8IWV7 1749 aa23.39■■□□□ 1.34
RAB40C-206ENST00000561781 TMEM131LA2VDJ0 1609 aa23.39■■□□□ 1.33
RAB40C-206ENST00000561781 HS1BP3Q53T59 392 aa23.39■■□□□ 1.33
RAB40C-206ENST00000561781 ADGRB3O60242 1522 aa23.39■■□□□ 1.33
RAB40C-206ENST00000561781 ZNF521Q96K83 1311 aa23.38■■□□□ 1.33
RAB40C-206ENST00000561781 SKOR2Q2VWA4 1001 aaPredicted RBP23.38■■□□□ 1.33
RAB40C-206ENST00000561781 GAS2L3Q86XJ1 694 aa23.38■■□□□ 1.33
RAB40C-206ENST00000561781 PTMSP20962 102 aa23.37■■□□□ 1.33
RAB40C-206ENST00000561781 LETM1O95202 739 aaPredicted RBP23.36■■□□□ 1.33
RAB40C-206ENST00000561781 ZNF500O60304 480 aaPredicted RBP23.35■■□□□ 1.33
RAB40C-206ENST00000561781 ZNF142P52746 1687 aaPredicted RBP23.35■■□□□ 1.33
RAB40C-206ENST00000561781 LTKP29376 864 aa23.34■■□□□ 1.33
RAB40C-206ENST00000561781 CSPP1Q1MSJ5 1256 aa23.34■■□□□ 1.33
RAB40C-206ENST00000561781 KIF1BO60333 1816 aa23.33■■□□□ 1.33
RAB40C-206ENST00000561781 BCAR3O75815 825 aa23.33■■□□□ 1.33
RAB40C-206ENST00000561781 NASPP49321 788 aaPredicted RBP23.33■■□□□ 1.33
RAB40C-206ENST00000561781 SLFN5Q08AF3 891 aa23.32■■□□□ 1.32
RAB40C-206ENST00000561781 TMEM51Q9NW97 253 aa23.32■■□□□ 1.32
RAB40C-206ENST00000561781 NCKAP5LQ9HCH0 1330 aa23.32■■□□□ 1.32
RAB40C-206ENST00000561781 TAF3Q5VWG9 929 aa23.32■■□□□ 1.32
RAB40C-206ENST00000561781 TMEM2Q9UHN6 1383 aa23.31■■□□□ 1.32
RAB40C-206ENST00000561781 THEMISQ8N1K5 641 aaPredicted RBP23.31■■□□□ 1.32
RAB40C-206ENST00000561781 ARID3AQ99856 593 aa23.3■■□□□ 1.32
RAB40C-206ENST00000561781 PANK3Q9H999 370 aa23.3■■□□□ 1.32
RAB40C-206ENST00000561781 NOL7Q9UMY1 257 aaKnown RBP23.29■■□□□ 1.32
RAB40C-206ENST00000561781 RIMS2Q9UQ26 1411 aa23.29■■□□□ 1.32
RAB40C-206ENST00000561781 WDR43Q15061 677 aaKnown RBP eCLIP23.28■■□□□ 1.32
RAB40C-206ENST00000561781 TXNDC2Q86VQ3 553 aa23.28■■□□□ 1.32
RAB40C-206ENST00000561781 SASS6Q6UVJ0 657 aa23.27■■□□□ 1.32
RAB40C-206ENST00000561781 CLUAP1Q96AJ1 413 aa23.27■■□□□ 1.32
RAB40C-206ENST00000561781 ADGRF5Q8IZF2 1346 aa23.27■■□□□ 1.32
RAB40C-206ENST00000561781 ZFYVE9O95405 1425 aa23.27■■□□□ 1.32
RAB40C-206ENST00000561781 NEXMIFQ5QGS0 1516 aa23.27■■□□□ 1.32
RAB40C-206ENST00000561781 TRMT2AQ8IZ69 625 aaKnown RBP23.27■■□□□ 1.31
RAB40C-206ENST00000561781 GBP4Q96PP9 640 aa23.27■■□□□ 1.31
RAB40C-206ENST00000561781 CGNL1Q0VF96 1302 aa23.26■■□□□ 1.31
RAB40C-206ENST00000561781 NKTRP30414 1462 aaKnown RBP23.26■■□□□ 1.31
RAB40C-206ENST00000561781 SPINK5Q9NQ38 1064 aaPredicted RBP23.25■■□□□ 1.31
RAB40C-206ENST00000561781 IBTKQ9P2D0 1353 aaPredicted RBP23.24■■□□□ 1.31
RAB40C-206ENST00000561781 DISP3Q9P2K9 1392 aa23.24■■□□□ 1.31
RAB40C-206ENST00000561781 ZNF692Q9BU19 519 aaPredicted RBP23.23■■□□□ 1.31
RAB40C-206ENST00000561781 ARHGAP23Q9P227 1491 aa23.22■■□□□ 1.31
RAB40C-206ENST00000561781 MCM5P33992 734 aa23.22■■□□□ 1.31
RAB40C-206ENST00000561781 SLIT1O75093 1534 aa23.22■■□□□ 1.31
RAB40C-206ENST00000561781 SLC26A8Q96RN1 970 aa23.21■■□□□ 1.31
RAB40C-206ENST00000561781 COG6Q9Y2V7 657 aa23.21■■□□□ 1.31
RAB40C-206ENST00000561781 PDE3AQ14432 1141 aa23.2■■□□□ 1.3
RAB40C-206ENST00000561781 SCAF11Q99590 1463 aaKnown RBP23.2■■□□□ 1.3
RAB40C-206ENST00000561781 XPCQ01831 940 aaPredicted RBP23.2■■□□□ 1.3
RAB40C-206ENST00000561781 ANKLE2Q86XL3 938 aa23.2■■□□□ 1.3
RAB40C-206ENST00000561781 KDM5AP29375 1690 aaKnown RBP23.19■■□□□ 1.3
RAB40C-206ENST00000561781 HSCBQ8IWL3 235 aa23.19■■□□□ 1.3
RAB40C-206ENST00000561781 PANK1Q8TE04 598 aa23.19■■□□□ 1.3
RAB40C-206ENST00000561781 CIZ1Q9ULV3 898 aaPredicted RBP23.19■■□□□ 1.3
RAB40C-206ENST00000561781 EID1Q9Y6B2 187 aa23.19■■□□□ 1.3
RAB40C-206ENST00000561781 TRPM1Q7Z4N2 1603 aa23.19■■□□□ 1.3
RAB40C-206ENST00000561781 NCOA3Q9Y6Q9 1424 aa23.19■■□□□ 1.3
RAB40C-206ENST00000561781 PPLO60437 1756 aa23.19■■□□□ 1.3
RAB40C-206ENST00000561781 NEURL4Q96JN8 1562 aa23.18■■□□□ 1.3
RAB40C-206ENST00000561781 STRCQ7RTU9 1775 aa23.18■■□□□ 1.3
RAB40C-206ENST00000561781 PPP2R1AP30153 589 aa23.18■■□□□ 1.3
RAB40C-206ENST00000561781 DDIT3P35638 169 aa23.18■■□□□ 1.3
RAB40C-206ENST00000561781 TNPO1Q92973 898 aaKnown RBP23.17■■□□□ 1.3
RAB40C-206ENST00000561781 NBPF1Q3BBV0 1214 aa23.17■■□□□ 1.3
RAB40C-206ENST00000561781 TESK2Q96S53 571 aa23.17■■□□□ 1.3
RAB40C-206ENST00000561781 IFT172Q9UG01 1749 aa23.16■■□□□ 1.3
RAB40C-206ENST00000561781 ZKSCAN5Q9Y2L8 839 aa23.16■■□□□ 1.3
RAB40C-206ENST00000561781 CCDC146Q8IYE0 955 aa23.16■■□□□ 1.3
RAB40C-206ENST00000561781 C22orf23Q9BZE7 217 aa23.15■■□□□ 1.3
RAB40C-206ENST00000561781 EIF2AK3Q9NZJ5 1116 aaKnown RBP23.14■■□□□ 1.3
RAB40C-206ENST00000561781 PRAG1Q86YV5 1406 aa23.14■■□□□ 1.29
RAB40C-206ENST00000561781 ZNF830Q96NB3 372 aaPredicted RBP23.14■■□□□ 1.29
RAB40C-206ENST00000561781 PDZRN3Q9UPQ7 1066 aa23.14■■□□□ 1.29
RAB40C-206ENST00000561781 CFAP70Q5T0N1 1121 aa23.13■■□□□ 1.29
RAB40C-206ENST00000561781 PAXIP1Q6ZW49 1069 aaPredicted RBP23.13■■□□□ 1.29
RAB40C-206ENST00000561781 PMFBP1Q8TBY8 1022 aa23.13■■□□□ 1.29
RAB40C-206ENST00000561781 PDLIM2Q96JY6 352 aa23.13■■□□□ 1.29
RAB40C-206ENST00000561781 NINLQ9Y2I6 1382 aa23.12■■□□□ 1.29
RAB40C-206ENST00000561781 E9PSI1 815 aa23.12■■□□□ 1.29
RAB40C-206ENST00000561781 VGFO15240 615 aaPredicted RBP23.12■■□□□ 1.29
RAB40C-206ENST00000561781 TMEM132EQ6IEE7 984 aa23.11■■□□□ 1.29
RAB40C-206ENST00000561781 IQGAP1P46940 1657 aa23.11■■□□□ 1.29
RAB40C-206ENST00000561781 NPHP4O75161 1426 aaPredicted RBP23.11■■□□□ 1.29
RAB40C-206ENST00000561781 RPGRIP1LQ68CZ1 1315 aa23.11■■□□□ 1.29
RAB40C-206ENST00000561781 CDK11BP21127 795 aaKnown RBP23.11■■□□□ 1.29
RAB40C-206ENST00000561781 CBX1P83916 185 aa23.11■■□□□ 1.29
RAB40C-206ENST00000561781 RAB3GAP1Q15042 981 aa23.11■■□□□ 1.29
RAB40C-206ENST00000561781 APAF1O14727 1248 aa23.1■■□□□ 1.29
RAB40C-206ENST00000561781 FTSJ3Q8IY81 847 aaKnown RBP23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms