RNA–Protein interactions for RNA: ENST00000561348.1

HERC1-212, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 2

Gene HERC1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-212ENST00000561348 USP47Q96K76 1375 aa14.21□□□□□ -0.14
HERC1-212ENST00000561348 PLEKHG3A1L390 1219 aa14.2□□□□□ -0.14
HERC1-212ENST00000561348 USP21Q9UK80 565 aa14.2□□□□□ -0.14
HERC1-212ENST00000561348 QTRT2Q9H974 415 aaKnown RBP14.18□□□□□ -0.14
HERC1-212ENST00000561348 CCDC9Q9Y3X0 531 aaKnown RBP14.18□□□□□ -0.14
HERC1-212ENST00000561348 TOPAZ1Q8N9V7 1692 aa14.17□□□□□ -0.14
HERC1-212ENST00000561348 SOX12O15370 315 aa14.17□□□□□ -0.14
HERC1-212ENST00000561348 ATAD2Q6PL18 1390 aa14.17□□□□□ -0.14
HERC1-212ENST00000561348 COL22A1Q8NFW1 1626 aaPredicted RBP14.16□□□□□ -0.14
HERC1-212ENST00000561348 RXRBP28702 533 aa14.16□□□□□ -0.14
HERC1-212ENST00000561348 ZC3H6P61129 1189 aaKnown RBP14.16□□□□□ -0.14
HERC1-212ENST00000561348 TMF1P82094 1093 aa14.16□□□□□ -0.14
HERC1-212ENST00000561348 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.16□□□□□ -0.14
HERC1-212ENST00000561348 SLC12A5Q9H2X9 1139 aa14.16□□□□□ -0.14
HERC1-212ENST00000561348 POLR3AO14802 1390 aaPredicted RBP14.16□□□□□ -0.14
HERC1-212ENST00000561348 TRPM3Q9HCF6 1732 aaPredicted RBP14.15□□□□□ -0.14
HERC1-212ENST00000561348 NLRP6P59044 892 aa14.15□□□□□ -0.14
HERC1-212ENST00000561348 HDGFL2Q7Z4V5 671 aaPredicted RBP14.15□□□□□ -0.14
HERC1-212ENST00000561348 KTN1Q86UP2 1357 aaKnown RBP14.14□□□□□ -0.15
HERC1-212ENST00000561348 TESK2Q96S53 571 aa14.14□□□□□ -0.15
HERC1-212ENST00000561348 SBNO2Q9Y2G9 1366 aa14.13□□□□□ -0.15
HERC1-212ENST00000561348 CHRNA2Q15822 529 aa14.13□□□□□ -0.15
HERC1-212ENST00000561348 NLRP13Q86W25 1043 aa14.13□□□□□ -0.15
HERC1-212ENST00000561348 ZNF692Q9BU19 519 aaPredicted RBP14.13□□□□□ -0.15
HERC1-212ENST00000561348 PRDM11Q9NQV5 511 aa14.13□□□□□ -0.15
HERC1-212ENST00000561348 ALS2Q96Q42 1657 aa14.12□□□□□ -0.15
HERC1-212ENST00000561348 FAM83GA6ND36 823 aa14.12□□□□□ -0.15
HERC1-212ENST00000561348 SLC24A1O60721 1099 aa14.12□□□□□ -0.15
HERC1-212ENST00000561348 EIF4G2P78344 907 aaKnown RBP eCLIP14.12□□□□□ -0.15
HERC1-212ENST00000561348 TERF2IPQ9NYB0 399 aa14.12□□□□□ -0.15
HERC1-212ENST00000561348 TRPC5Q9UL62 973 aaPredicted RBP14.12□□□□□ -0.15
HERC1-212ENST00000561348 USP6P35125 1406 aa14.12□□□□□ -0.15
HERC1-212ENST00000561348 A0A0G2JS52 829 aa14.11□□□□□ -0.15
HERC1-212ENST00000561348 HSPA5P11021 654 aaKnown RBP14.11□□□□□ -0.15
HERC1-212ENST00000561348 MYT1Q01538 1121 aa14.11□□□□□ -0.15
HERC1-212ENST00000561348 BTG4Q9NY30 223 aa14.11□□□□□ -0.15
HERC1-212ENST00000561348 MARF1Q9Y4F3 1742 aaKnown RBP14.11□□□□□ -0.15
HERC1-212ENST00000561348 TTC21BQ7Z4L5 1316 aa14.11□□□□□ -0.15
HERC1-212ENST00000561348 SOCS7O14512 581 aa14.1□□□□□ -0.15
HERC1-212ENST00000561348 RBM6P78332 1123 aaKnown RBP14.1□□□□□ -0.15
HERC1-212ENST00000561348 FNBP4Q8N3X1 1017 aaPredicted RBP14.1□□□□□ -0.15
HERC1-212ENST00000561348 STRN4Q9NRL3 753 aa14.1□□□□□ -0.15
HERC1-212ENST00000561348 CDCA8Q53HL2 280 aa14.09□□□□□ -0.15
HERC1-212ENST00000561348 UNC5CLQ8IV45 518 aa14.09□□□□□ -0.15
HERC1-212ENST00000561348 ZRANB1Q9UGI0 708 aa14.09□□□□□ -0.15
HERC1-212ENST00000561348 ABCA3Q99758 1704 aa14.09□□□□□ -0.15
HERC1-212ENST00000561348 KIAA0232Q92628 1395 aa14.09□□□□□ -0.15
HERC1-212ENST00000561348 EVA1CP58658 441 aa14.08□□□□□ -0.16
HERC1-212ENST00000561348 GCP02774 474 aa14.07□□□□□ -0.16
HERC1-212ENST00000561348 NME9Q86XW9 330 aa14.07□□□□□ -0.16
HERC1-212ENST00000561348 AKAP12Q02952 1782 aa14.06□□□□□ -0.16
HERC1-212ENST00000561348 BCL9LQ86UU0 1499 aa14.06□□□□□ -0.16
HERC1-212ENST00000561348 KCNA4P22459 653 aa14.06□□□□□ -0.16
HERC1-212ENST00000561348 GJD4Q96KN9 370 aaPredicted RBP14.06□□□□□ -0.16
HERC1-212ENST00000561348 USP35Q9P2H5 1018 aa14.06□□□□□ -0.16
HERC1-212ENST00000561348 A0A1W2PP64 1363 aa14.06□□□□□ -0.16
HERC1-212ENST00000561348 PLCH1Q4KWH8 1693 aa14.05□□□□□ -0.16
HERC1-212ENST00000561348 TTC21AQ8NDW8 1320 aa14.05□□□□□ -0.16
HERC1-212ENST00000561348 CPSF1Q10570 1443 aaKnown RBP14.05□□□□□ -0.16
HERC1-212ENST00000561348 PHRF1Q9P1Y6 1649 aaKnown RBP14.04□□□□□ -0.16
HERC1-212ENST00000561348 PUS7Q96PZ0 661 aaKnown RBP14.04□□□□□ -0.16
HERC1-212ENST00000561348 BRD4O60885 1362 aaPredicted RBP14.04□□□□□ -0.16
HERC1-212ENST00000561348 ATRNO75882 1429 aa14.03□□□□□ -0.16
HERC1-212ENST00000561348 SLIT2O94813 1529 aa14.03□□□□□ -0.16
HERC1-212ENST00000561348 PIK3C2AO00443 1686 aa14.03□□□□□ -0.16
HERC1-212ENST00000561348 COL14A1Q05707 1796 aaKnown RBP14.02□□□□□ -0.16
HERC1-212ENST00000561348 CD163L1Q9NR16 1453 aa14.02□□□□□ -0.16
HERC1-212ENST00000561348 USP19O94966 1318 aa14.02□□□□□ -0.17
HERC1-212ENST00000561348 VPS72Q15906 364 aa14.02□□□□□ -0.17
HERC1-212ENST00000561348 KCNH5Q8NCM2 988 aa14.02□□□□□ -0.17
HERC1-212ENST00000561348 MON2Q7Z3U7 1717 aa14.01□□□□□ -0.17
HERC1-212ENST00000561348 CRYBG1Q9Y4K1 1723 aa14.01□□□□□ -0.17
HERC1-212ENST00000561348 EDC4Q6P2E9 1401 aaKnown RBP14.01□□□□□ -0.17
HERC1-212ENST00000561348 SSH2Q76I76 1423 aa14.01□□□□□ -0.17
HERC1-212ENST00000561348 FAM98CQ17RN3 349 aaKnown RBP14.01□□□□□ -0.17
HERC1-212ENST00000561348 NCBP3Q53F19 620 aaKnown RBP14.01□□□□□ -0.17
HERC1-212ENST00000561348 NRKQ7Z2Y5 1582 aa14□□□□□ -0.17
HERC1-212ENST00000561348 RGS12O14924 1447 aa14□□□□□ -0.17
HERC1-212ENST00000561348 NINLQ9Y2I6 1382 aa14□□□□□ -0.17
HERC1-212ENST00000561348 CSB-PGBD3P0DP91 1061 aa14□□□□□ -0.17
HERC1-212ENST00000561348 COG3Q96JB2 828 aa14□□□□□ -0.17
HERC1-212ENST00000561348 GGNBP2Q9H3C7 697 aa14□□□□□ -0.17
HERC1-212ENST00000561348 ANKRD36BQ8N2N9 1353 aa13.99□□□□□ -0.17
HERC1-212ENST00000561348 NWD2Q9ULI1 1742 aa13.98□□□□□ -0.17
HERC1-212ENST00000561348 CNGB1Q14028 1251 aaPredicted RBP13.98□□□□□ -0.17
HERC1-212ENST00000561348 LARP1Q6PKG0 1096 aaKnown RBP13.98□□□□□ -0.17
HERC1-212ENST00000561348 SEPT12Q8IYM1 358 aa13.98□□□□□ -0.17
HERC1-212ENST00000561348 C11orf95C9JLR9 678 aaPredicted RBP13.97□□□□□ -0.17
HERC1-212ENST00000561348 FBLN1P23142 703 aa13.97□□□□□ -0.17
HERC1-212ENST00000561348 TOM1L2Q6ZVM7 507 aa13.97□□□□□ -0.17
HERC1-212ENST00000561348 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.97□□□□□ -0.17
HERC1-212ENST00000561348 GLI3P10071 1580 aa13.96□□□□□ -0.17
HERC1-212ENST00000561348 MAPK8IP2Q13387 824 aaPredicted RBP13.96□□□□□ -0.17
HERC1-212ENST00000561348 LTV1Q96GA3 475 aaPredicted RBP13.96□□□□□ -0.17
HERC1-212ENST00000561348 NSD3Q9BZ95 1437 aa13.96□□□□□ -0.18
HERC1-212ENST00000561348 CPDO75976 1380 aa13.96□□□□□ -0.18
HERC1-212ENST00000561348 SLIT3O75094 1523 aa13.95□□□□□ -0.18
HERC1-212ENST00000561348 SPATA31A5Q5VU36 1347 aa13.95□□□□□ -0.18
HERC1-212ENST00000561348 SPATA31A7Q8IWB4 1347 aa13.95□□□□□ -0.18
HERC1-212ENST00000561348 CAMTA1Q9Y6Y1 1673 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms