RNA–Protein interactions for RNA: ENST00000561036.1

HDDC3-206, Transcript of HD domain containing 3, humanhuman

TSL 3

Gene HDDC3, Length 457 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-206ENST00000561036 NUTM2FA1L443 756 aa22.76■■□□□ 1.23
HDDC3-206ENST00000561036 COG3Q96JB2 828 aa22.76■■□□□ 1.23
HDDC3-206ENST00000561036 NME9Q86XW9 330 aa22.75■■□□□ 1.23
HDDC3-206ENST00000561036 PNPLA6Q8IY17 1366 aa22.75■■□□□ 1.23
HDDC3-206ENST00000561036 NCOA3Q9Y6Q9 1424 aa22.74■■□□□ 1.23
HDDC3-206ENST00000561036 NGDNQ8NEJ9 315 aaKnown RBP22.74■■□□□ 1.23
HDDC3-206ENST00000561036 RGPD8O14715 1765 aaPredicted RBP22.73■■□□□ 1.23
HDDC3-206ENST00000561036 PROSER2Q86WR7 435 aaPredicted RBP22.73■■□□□ 1.23
HDDC3-206ENST00000561036 COL3A1P02461 1466 aaPredicted RBP22.73■■□□□ 1.23
HDDC3-206ENST00000561036 NUDCQ9Y266 331 aa22.72■■□□□ 1.23
HDDC3-206ENST00000561036 HSPA2P54652 639 aa22.71■■□□□ 1.23
HDDC3-206ENST00000561036 PMFBP1Q8TBY8 1022 aa22.7■■□□□ 1.22
HDDC3-206ENST00000561036 OVOS2A0A0J9YW53 1432 aa22.7■■□□□ 1.22
HDDC3-206ENST00000561036 OVOS2Q6IE36 1432 aa22.7■■□□□ 1.22
HDDC3-206ENST00000561036 C14orf37Q86TY3 774 aa22.69■■□□□ 1.22
HDDC3-206ENST00000561036 POLKQ9UBT6 870 aa22.69■■□□□ 1.22
HDDC3-206ENST00000561036 USP31Q70CQ4 1352 aa22.68■■□□□ 1.22
HDDC3-206ENST00000561036 PHF8Q9UPP1 1060 aa22.68■■□□□ 1.22
HDDC3-206ENST00000561036 NCBP3Q53F19 620 aaKnown RBP22.67■■□□□ 1.22
HDDC3-206ENST00000561036 RUNDC1Q96C34 613 aa22.67■■□□□ 1.22
HDDC3-206ENST00000561036 C19orf44Q9H6X5 657 aa22.67■■□□□ 1.22
HDDC3-206ENST00000561036 CDK12Q9NYV4 1490 aaPredicted RBP22.66■■□□□ 1.22
HDDC3-206ENST00000561036 ZRANB1Q9UGI0 708 aa22.66■■□□□ 1.22
HDDC3-206ENST00000561036 STRCQ7RTU9 1775 aa22.66■■□□□ 1.22
HDDC3-206ENST00000561036 DCCP43146 1447 aa22.65■■□□□ 1.22
HDDC3-206ENST00000561036 DIAPH1O60610 1272 aaKnown RBP22.65■■□□□ 1.22
HDDC3-206ENST00000561036 NEFLP07196 543 aa22.65■■□□□ 1.22
HDDC3-206ENST00000561036 RBM33Q96EV2 1170 aaKnown RBP22.64■■□□□ 1.21
HDDC3-206ENST00000561036 MAP2P11137 1827 aaKnown RBP22.64■■□□□ 1.21
HDDC3-206ENST00000561036 ZNF521Q96K83 1311 aa22.63■■□□□ 1.21
HDDC3-206ENST00000561036 LRRC7Q96NW7 1537 aa22.63■■□□□ 1.21
HDDC3-206ENST00000561036 USP54Q70EL1 1684 aa22.63■■□□□ 1.21
HDDC3-206ENST00000561036 CCDC146Q8IYE0 955 aa22.63■■□□□ 1.21
HDDC3-206ENST00000561036 PNNQ9H307 717 aaKnown RBP22.63■■□□□ 1.21
HDDC3-206ENST00000561036 APAF1O14727 1248 aa22.62■■□□□ 1.21
HDDC3-206ENST00000561036 U2AF1L5P0DN76 240 aaPredicted RBP22.62■■□□□ 1.21
HDDC3-206ENST00000561036 U2AF1Q01081 240 aaKnown RBP eCLIP22.62■■□□□ 1.21
HDDC3-206ENST00000561036 STRCP1A6NGW2 1772 aa22.62■■□□□ 1.21
HDDC3-206ENST00000561036 SALL2Q9Y467 1007 aaPredicted RBP22.61■■□□□ 1.21
HDDC3-206ENST00000561036 TMEM94Q12767 1356 aa22.61■■□□□ 1.21
HDDC3-206ENST00000561036 SUPT16HQ9Y5B9 1047 aaKnown RBP22.6■■□□□ 1.21
HDDC3-206ENST00000561036 PIK3C2AO00443 1686 aa22.59■■□□□ 1.21
HDDC3-206ENST00000561036 SENP3-EIF4A1A0A087X0R7 540 aa22.59■■□□□ 1.21
HDDC3-206ENST00000561036 ESCO1Q5FWF5 840 aa22.59■■□□□ 1.21
HDDC3-206ENST00000561036 IQSEC2Q5JU85 1478 aa22.59■■□□□ 1.21
HDDC3-206ENST00000561036 EMILIN1Q9Y6C2 1016 aa22.58■■□□□ 1.21
HDDC3-206ENST00000561036 KIF1AQ12756 1690 aa22.58■■□□□ 1.2
HDDC3-206ENST00000561036 U2SURPO15042 1029 aaKnown RBP22.57■■□□□ 1.2
HDDC3-206ENST00000561036 ATF3P18847 181 aa22.57■■□□□ 1.2
HDDC3-206ENST00000561036 C1orf167Q5SNV9 1468 aa22.57■■□□□ 1.2
HDDC3-206ENST00000561036 PPM1GO15355 546 aaPredicted RBP22.56■■□□□ 1.2
HDDC3-206ENST00000561036 GOLGA2Q08379 1002 aa22.56■■□□□ 1.2
HDDC3-206ENST00000561036 FCHSD2O94868 740 aa22.55■■□□□ 1.2
HDDC3-206ENST00000561036 FBLN1P23142 703 aa22.55■■□□□ 1.2
HDDC3-206ENST00000561036 PSME1Q06323 249 aa22.55■■□□□ 1.2
HDDC3-206ENST00000561036 CCDC27Q2M243 656 aa22.55■■□□□ 1.2
HDDC3-206ENST00000561036 TCP11L2Q8N4U5 519 aa22.55■■□□□ 1.2
HDDC3-206ENST00000561036 IL13P35225 146 aa22.54■■□□□ 1.2
HDDC3-206ENST00000561036 RRS1Q15050 365 aaKnown RBP22.54■■□□□ 1.2
HDDC3-206ENST00000561036 CADPS2Q86UW7 1296 aa22.54■■□□□ 1.2
HDDC3-206ENST00000561036 DMRT2Q9Y5R5 561 aa22.54■■□□□ 1.2
HDDC3-206ENST00000561036 KIF24Q5T7B8 1368 aa22.53■■□□□ 1.2
HDDC3-206ENST00000561036 NLRP6P59044 892 aa22.53■■□□□ 1.2
HDDC3-206ENST00000561036 CDCA7LQ96GN5 454 aa22.53■■□□□ 1.2
HDDC3-206ENST00000561036 PLEKHF1Q96S99 279 aa22.53■■□□□ 1.2
HDDC3-206ENST00000561036 PHF23Q9BUL5 403 aaPredicted RBP22.53■■□□□ 1.2
HDDC3-206ENST00000561036 MST1RQ04912 1400 aa22.53■■□□□ 1.2
HDDC3-206ENST00000561036 RNF123Q5XPI4 1314 aa22.53■■□□□ 1.2
HDDC3-206ENST00000561036 FKBP8Q14318 412 aa22.52■■□□□ 1.2
HDDC3-206ENST00000561036 ERICH6BQ5W0A0 696 aa22.52■■□□□ 1.2
HDDC3-206ENST00000561036 ABTB2Q8N961 1025 aa22.52■■□□□ 1.2
HDDC3-206ENST00000561036 MSH6P52701 1360 aa22.51■■□□□ 1.19
HDDC3-206ENST00000561036 ORAI2Q96SN7 254 aa22.51■■□□□ 1.19
HDDC3-206ENST00000561036 SLFN5Q08AF3 891 aa22.5■■□□□ 1.19
HDDC3-206ENST00000561036 TRMT2AQ8IZ69 625 aaKnown RBP22.5■■□□□ 1.19
HDDC3-206ENST00000561036 MARF1Q9Y4F3 1742 aaKnown RBP22.5■■□□□ 1.19
HDDC3-206ENST00000561036 MAPK8IP3Q9UPT6 1336 aa22.5■■□□□ 1.19
HDDC3-206ENST00000561036 SBNO1A3KN83 1393 aa22.5■■□□□ 1.19
HDDC3-206ENST00000561036 E9PSI1 815 aa22.49■■□□□ 1.19
HDDC3-206ENST00000561036 PAK3O75914 559 aaPredicted RBP22.49■■□□□ 1.19
HDDC3-206ENST00000561036 WDR63Q8IWG1 891 aa22.49■■□□□ 1.19
HDDC3-206ENST00000561036 WWC1Q8IX03 1113 aa22.49■■□□□ 1.19
HDDC3-206ENST00000561036 FLT4P35916 1363 aa22.48■■□□□ 1.19
HDDC3-206ENST00000561036 NEFMP07197 916 aa22.47■■□□□ 1.19
HDDC3-206ENST00000561036 DUSP27Q5VZP5 1158 aa22.47■■□□□ 1.19
HDDC3-206ENST00000561036 RSPH6AQ9H0K4 717 aa22.47■■□□□ 1.19
HDDC3-206ENST00000561036 PEAK1Q9H792 1746 aa22.47■■□□□ 1.19
HDDC3-206ENST00000561036 MAP3K19Q56UN5 1328 aa22.47■■□□□ 1.19
HDDC3-206ENST00000561036 XIRP1Q702N8 1843 aaKnown RBP22.46■■□□□ 1.19
HDDC3-206ENST00000561036 RCAN3Q9UKA8 241 aa22.46■■□□□ 1.19
HDDC3-206ENST00000561036 FOXO3O43524 673 aa22.45■■□□□ 1.18
HDDC3-206ENST00000561036 TRPM3Q9HCF6 1732 aaPredicted RBP22.45■■□□□ 1.18
HDDC3-206ENST00000561036 TMPOP42166 694 aaKnown RBP22.44■■□□□ 1.18
HDDC3-206ENST00000561036 EIF4A2Q14240 407 aaKnown RBP22.44■■□□□ 1.18
HDDC3-206ENST00000561036 KRT28Q7Z3Y7 464 aa22.44■■□□□ 1.18
HDDC3-206ENST00000561036 KCNH5Q8NCM2 988 aa22.44■■□□□ 1.18
HDDC3-206ENST00000561036 RTL1A6NKG5 1358 aa22.43■■□□□ 1.18
HDDC3-206ENST00000561036 ZNF335Q9H4Z2 1342 aaPredicted RBP22.42■■□□□ 1.18
HDDC3-206ENST00000561036 PRKAR2BP31323 418 aa22.42■■□□□ 1.18
HDDC3-206ENST00000561036 AMPHP49418 695 aa22.42■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms