RNA–Protein interactions for RNA: ENST00000560975.5

TPM1-228, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 2,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-228ENST00000560975 XPCQ01831 940 aaPredicted RBP20.5■□□□□ 0.87
TPM1-228ENST00000560975 PTPRTO14522 1441 aa20.49■□□□□ 0.87
TPM1-228ENST00000560975 TBC1D9Q6ZT07 1266 aa20.49■□□□□ 0.87
TPM1-228ENST00000560975 C1orf115Q9H7X2 142 aa20.49■□□□□ 0.87
TPM1-228ENST00000560975 ZNF518AQ6AHZ1 1483 aa20.49■□□□□ 0.87
TPM1-228ENST00000560975 BMP2KLQ5H9B9 411 aa20.48■□□□□ 0.87
TPM1-228ENST00000560975 AK9Q5TCS8 1911 aa20.48■□□□□ 0.87
TPM1-228ENST00000560975 CT47B1P0C2W7 299 aaPredicted RBP20.47■□□□□ 0.87
TPM1-228ENST00000560975 CALD1Q05682 793 aaKnown RBP20.46■□□□□ 0.87
TPM1-228ENST00000560975 CHGAP10645 457 aaKnown RBP20.46■□□□□ 0.87
TPM1-228ENST00000560975 AFAP1Q8N556 730 aa20.46■□□□□ 0.87
TPM1-228ENST00000560975 RBSNQ9H1K0 784 aa20.46■□□□□ 0.87
TPM1-228ENST00000560975 TRAPPC8Q9Y2L5 1435 aa20.45■□□□□ 0.87
TPM1-228ENST00000560975 TMPOP42166 694 aaKnown RBP20.45■□□□□ 0.86
TPM1-228ENST00000560975 ZSCAN23Q3MJ62 389 aa20.45■□□□□ 0.86
TPM1-228ENST00000560975 TRIM35Q9UPQ4 493 aa20.45■□□□□ 0.86
TPM1-228ENST00000560975 UQCRHLA0A096LP55 91 aa20.44■□□□□ 0.86
TPM1-228ENST00000560975 UQCRHP07919 91 aa20.44■□□□□ 0.86
TPM1-228ENST00000560975 SPAG9O60271 1321 aaKnown RBP20.44■□□□□ 0.86
TPM1-228ENST00000560975 UGGT1Q9NYU2 1555 aa20.44■□□□□ 0.86
TPM1-228ENST00000560975 ABCA6Q8N139 1617 aa20.43■□□□□ 0.86
TPM1-228ENST00000560975 IPO8O15397 1037 aaKnown RBP20.43■□□□□ 0.86
TPM1-228ENST00000560975 EFCAB2Q5VUJ9 269 aa20.43■□□□□ 0.86
TPM1-228ENST00000560975 RBM27Q9P2N5 1060 aaKnown RBP20.43■□□□□ 0.86
TPM1-228ENST00000560975 PKP1Q13835 747 aa20.43■□□□□ 0.86
TPM1-228ENST00000560975 TMEM132EQ6IEE7 984 aa20.43■□□□□ 0.86
TPM1-228ENST00000560975 SHROOM2Q13796 1616 aa20.42■□□□□ 0.86
TPM1-228ENST00000560975 PRIM1P49642 420 aaKnown RBP20.42■□□□□ 0.86
TPM1-228ENST00000560975 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.42■□□□□ 0.86
TPM1-228ENST00000560975 ZBTB7CA1YPR0 619 aa20.41■□□□□ 0.86
TPM1-228ENST00000560975 ZNF445P59923 1031 aa20.41■□□□□ 0.86
TPM1-228ENST00000560975 PRDM4Q9UKN5 801 aa20.41■□□□□ 0.86
TPM1-228ENST00000560975 NOL7Q9UMY1 257 aaKnown RBP20.41■□□□□ 0.86
TPM1-228ENST00000560975 CD109Q6YHK3 1445 aa20.41■□□□□ 0.86
TPM1-228ENST00000560975 IBTKQ9P2D0 1353 aaPredicted RBP20.41■□□□□ 0.86
TPM1-228ENST00000560975 KIF16BQ96L93 1317 aa20.4■□□□□ 0.86
TPM1-228ENST00000560975 KIF3BO15066 747 aa20.4■□□□□ 0.86
TPM1-228ENST00000560975 LMBRD1Q9NUN5 540 aa20.4■□□□□ 0.86
TPM1-228ENST00000560975 PRPF40AO75400 957 aaKnown RBP20.4■□□□□ 0.86
TPM1-228ENST00000560975 CHAMP1Q96JM3 812 aa20.4■□□□□ 0.86
TPM1-228ENST00000560975 CLEC17AQ6ZS10 378 aa20.39■□□□□ 0.85
TPM1-228ENST00000560975 KIAA1210Q9ULL0 1709 aa20.39■□□□□ 0.85
TPM1-228ENST00000560975 MAP3K4Q9Y6R4 1608 aa20.39■□□□□ 0.85
TPM1-228ENST00000560975 TERF1P54274 439 aa20.39■□□□□ 0.85
TPM1-228ENST00000560975 NOS1P29475 1434 aa20.38■□□□□ 0.85
TPM1-228ENST00000560975 PLEKHF1Q96S99 279 aa20.38■□□□□ 0.85
TPM1-228ENST00000560975 PPIP5K1Q6PFW1 1433 aa20.37■□□□□ 0.85
TPM1-228ENST00000560975 ZNF500O60304 480 aaPredicted RBP20.37■□□□□ 0.85
TPM1-228ENST00000560975 CDC45O75419 566 aa20.36■□□□□ 0.85
TPM1-228ENST00000560975 MAP7D2Q96T17 732 aa20.36■□□□□ 0.85
TPM1-228ENST00000560975 FOXD4L5Q5VV16 416 aaPredicted RBP20.36■□□□□ 0.85
TPM1-228ENST00000560975 FOXD4L4Q8WXT5 416 aaPredicted RBP20.36■□□□□ 0.85
TPM1-228ENST00000560975 HS1BP3Q53T59 392 aa20.36■□□□□ 0.85
TPM1-228ENST00000560975 ABCC11Q96J66 1382 aa20.36■□□□□ 0.85
TPM1-228ENST00000560975 PRDM10Q9NQV6 1147 aa20.36■□□□□ 0.85
TPM1-228ENST00000560975 SBNO2Q9Y2G9 1366 aa20.36■□□□□ 0.85
TPM1-228ENST00000560975 CFAP74Q9C0B2 1584 aa20.35■□□□□ 0.85
TPM1-228ENST00000560975 NUCB2P80303 420 aa20.35■□□□□ 0.85
TPM1-228ENST00000560975 GCC1Q96CN9 775 aa20.35■□□□□ 0.85
TPM1-228ENST00000560975 PDLIM2Q96JY6 352 aa20.35■□□□□ 0.85
TPM1-228ENST00000560975 ZKSCAN5Q9Y2L8 839 aa20.35■□□□□ 0.85
TPM1-228ENST00000560975 GPT2Q8TD30 523 aa20.35■□□□□ 0.85
TPM1-228ENST00000560975 GGNBP2Q9H3C7 697 aa20.35■□□□□ 0.85
TPM1-228ENST00000560975 ZBTB7BO15156 539 aaPredicted RBP20.34■□□□□ 0.85
TPM1-228ENST00000560975 NCBP3Q53F19 620 aaKnown RBP20.34■□□□□ 0.85
TPM1-228ENST00000560975 SAFB2Q14151 953 aaKnown RBP eCLIP20.34■□□□□ 0.85
TPM1-228ENST00000560975 ZGPATQ8N5A5 531 aaKnown RBP20.34■□□□□ 0.85
TPM1-228ENST00000560975 RNF214Q8ND24 703 aa20.34■□□□□ 0.85
TPM1-228ENST00000560975 ADGRB2O60241 1585 aa20.33■□□□□ 0.85
TPM1-228ENST00000560975 SYCE3A1L190 88 aa20.33■□□□□ 0.84
TPM1-228ENST00000560975 SIRT2Q8IXJ6 389 aa20.33■□□□□ 0.84
TPM1-228ENST00000560975 SENP3Q9H4L4 574 aaPredicted RBP20.33■□□□□ 0.84
TPM1-228ENST00000560975 ELL2O00472 640 aaPredicted RBP20.32■□□□□ 0.84
TPM1-228ENST00000560975 GSPT1P15170 499 aaKnown RBP20.32■□□□□ 0.84
TPM1-228ENST00000560975 RABEP1Q15276 862 aa20.32■□□□□ 0.84
TPM1-228ENST00000560975 CABP2Q9NPB3 220 aa20.32■□□□□ 0.84
TPM1-228ENST00000560975 MYOM2P54296 1465 aa20.32■□□□□ 0.84
TPM1-228ENST00000560975 PLCH2O75038 1416 aa20.32■□□□□ 0.84
TPM1-228ENST00000560975 NSFL1CQ9UNZ2 370 aaKnown RBP20.31■□□□□ 0.84
TPM1-228ENST00000560975 CYP2E1P05181 493 aaPredicted RBP20.3■□□□□ 0.84
TPM1-228ENST00000560975 TMEM63CQ9P1W3 806 aa20.3■□□□□ 0.84
TPM1-228ENST00000560975 ADGRL1O94910 1474 aa20.3■□□□□ 0.84
TPM1-228ENST00000560975 PODXL2Q9NZ53 605 aa20.3■□□□□ 0.84
TPM1-228ENST00000560975 CSPP1Q1MSJ5 1256 aa20.29■□□□□ 0.84
TPM1-228ENST00000560975 ALDH1L2Q3SY69 923 aa20.29■□□□□ 0.84
TPM1-228ENST00000560975 NUTM2DQ5VT03 806 aaPredicted RBP20.29■□□□□ 0.84
TPM1-228ENST00000560975 MPNDQ8N594 471 aa20.29■□□□□ 0.84
TPM1-228ENST00000560975 IL16Q14005 1332 aa20.29■□□□□ 0.84
TPM1-228ENST00000560975 TET3O43151 1660 aa20.28■□□□□ 0.84
TPM1-228ENST00000560975 DYNC1I1O14576 645 aa20.28■□□□□ 0.84
TPM1-228ENST00000560975 C16orf71Q8IYS4 520 aaPredicted RBP20.28■□□□□ 0.84
TPM1-228ENST00000560975 PTMAP06454 111 aaKnown RBP20.28■□□□□ 0.84
TPM1-228ENST00000560975 JARID2Q92833 1246 aaPredicted RBP20.28■□□□□ 0.84
TPM1-228ENST00000560975 THUMPD2Q9BTF0 503 aaKnown RBP20.28■□□□□ 0.84
TPM1-228ENST00000560975 ABCC1P33527 1531 aa20.27■□□□□ 0.84
TPM1-228ENST00000560975 SASS6Q6UVJ0 657 aa20.27■□□□□ 0.84
TPM1-228ENST00000560975 LRSAM1Q6UWE0 723 aa20.27■□□□□ 0.84
TPM1-228ENST00000560975 CCDC39Q9UFE4 941 aa20.27■□□□□ 0.84
TPM1-228ENST00000560975 ZHX1Q9UKY1 873 aaPredicted RBP20.27■□□□□ 0.83
TPM1-228ENST00000560975 ZDHHC9Q9Y397 364 aa20.27■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms