RNA–Protein interactions for RNA: ENST00000558910.2

TPM1-216, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 1,232 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-216ENST00000558910 FMN2Q9NZ56 1722 aa17.21■□□□□ 0.35
TPM1-216ENST00000558910 C19orf67A6NJJ6 358 aa17.2■□□□□ 0.34
TPM1-216ENST00000558910 WASLO00401 505 aaPredicted RBP17.2■□□□□ 0.34
TPM1-216ENST00000558910 PSME1Q06323 249 aa17.2■□□□□ 0.34
TPM1-216ENST00000558910 SHPRHQ149N8 1683 aa17.2■□□□□ 0.34
TPM1-216ENST00000558910 TONSLQ96HA7 1378 aa17.18■□□□□ 0.34
TPM1-216ENST00000558910 RGPD8O14715 1765 aaPredicted RBP17.18■□□□□ 0.34
TPM1-216ENST00000558910 NBPF8Q3BBV2 869 aa17.18■□□□□ 0.34
TPM1-216ENST00000558910 NGLY1Q96IV0 654 aa17.18■□□□□ 0.34
TPM1-216ENST00000558910 CDK19Q9BWU1 502 aa17.18■□□□□ 0.34
TPM1-216ENST00000558910 AFF2P51816 1311 aa17.18■□□□□ 0.34
TPM1-216ENST00000558910 PRR36Q9H6K5 1346 aa17.18■□□□□ 0.34
TPM1-216ENST00000558910 HAP1P54257 671 aaPredicted RBP17.17■□□□□ 0.34
TPM1-216ENST00000558910 ROCK2O75116 1388 aaKnown RBP17.16■□□□□ 0.34
TPM1-216ENST00000558910 PAK3O75914 559 aaPredicted RBP17.16■□□□□ 0.34
TPM1-216ENST00000558910 NGDNQ8NEJ9 315 aaKnown RBP17.16■□□□□ 0.34
TPM1-216ENST00000558910 CABLES1Q8TDN4 633 aa17.16■□□□□ 0.34
TPM1-216ENST00000558910 PXDNQ92626 1479 aa17.16■□□□□ 0.34
TPM1-216ENST00000558910 ARHGEF28Q8N1W1 1705 aaKnown RBP17.16■□□□□ 0.34
TPM1-216ENST00000558910 SRPK2P78362 688 aaKnown RBP17.15■□□□□ 0.34
TPM1-216ENST00000558910 NUDT16Q96DE0 195 aaKnown RBP17.15■□□□□ 0.34
TPM1-216ENST00000558910 CENPJQ9HC77 1338 aaPredicted RBP17.15■□□□□ 0.34
TPM1-216ENST00000558910 ZNF772Q68DY9 489 aaPredicted RBP17.14■□□□□ 0.33
TPM1-216ENST00000558910 CABP2Q9NPB3 220 aa17.14■□□□□ 0.33
TPM1-216ENST00000558910 USP32Q8NFA0 1604 aa17.12■□□□□ 0.33
TPM1-216ENST00000558910 SPATA31A3Q5VYP0 1347 aa17.12■□□□□ 0.33
TPM1-216ENST00000558910 KIF1AQ12756 1690 aa17.1■□□□□ 0.33
TPM1-216ENST00000558910 KIAA1210Q9ULL0 1709 aa17.1■□□□□ 0.33
TPM1-216ENST00000558910 NUTM2GQ5VZR2 741 aa17.1■□□□□ 0.33
TPM1-216ENST00000558910 CARD11Q9BXL7 1154 aa17.1■□□□□ 0.33
TPM1-216ENST00000558910 QTRT2Q9H974 415 aaKnown RBP17.1■□□□□ 0.33
TPM1-216ENST00000558910 EIF3AQ14152 1382 aaKnown RBP17.1■□□□□ 0.33
TPM1-216ENST00000558910 GPRASP1Q5JY77 1395 aa17.1■□□□□ 0.33
TPM1-216ENST00000558910 ANKARQ7Z5J8 1434 aa17.1■□□□□ 0.33
TPM1-216ENST00000558910 TULP4Q9NRJ4 1543 aa17.1■□□□□ 0.33
TPM1-216ENST00000558910 ADGRB2O60241 1585 aa17.1■□□□□ 0.33
TPM1-216ENST00000558910 RXRBP28702 533 aa17.09■□□□□ 0.33
TPM1-216ENST00000558910 USP21Q9UK80 565 aa17.09■□□□□ 0.33
TPM1-216ENST00000558910 TNS3Q68CZ2 1445 aa17.08■□□□□ 0.32
TPM1-216ENST00000558910 MNX1P50219 401 aaPredicted RBP17.08■□□□□ 0.32
TPM1-216ENST00000558910 TRPM1Q7Z4N2 1603 aa17.07■□□□□ 0.32
TPM1-216ENST00000558910 CD44P16070 742 aaKnown RBP17.06■□□□□ 0.32
TPM1-216ENST00000558910 ATP7BP35670 1465 aa17.05■□□□□ 0.32
TPM1-216ENST00000558910 ACEP12821 1306 aa17.05■□□□□ 0.32
TPM1-216ENST00000558910 CCER1Q8TC90 406 aaPredicted RBP17.04■□□□□ 0.32
TPM1-216ENST00000558910 CCDC61Q9Y6R9 512 aa17.04■□□□□ 0.32
TPM1-216ENST00000558910 QRICH2Q9H0J4 1663 aa17.04■□□□□ 0.32
TPM1-216ENST00000558910 CABP1Q9NZU7 370 aa17.03■□□□□ 0.32
TPM1-216ENST00000558910 SBNO1A3KN83 1393 aa17.02■□□□□ 0.32
TPM1-216ENST00000558910 EVC2Q86UK5 1308 aa17.02■□□□□ 0.32
TPM1-216ENST00000558910 CCDC9Q9Y3X0 531 aaKnown RBP17.02■□□□□ 0.32
TPM1-216ENST00000558910 COL22A1Q8NFW1 1626 aaPredicted RBP17.02■□□□□ 0.31
TPM1-216ENST00000558910 PPIP5K1Q6PFW1 1433 aa17.02■□□□□ 0.31
TPM1-216ENST00000558910 ARHGEF10O15013 1369 aa17.02■□□□□ 0.31
TPM1-216ENST00000558910 ZBTB7CA1YPR0 619 aa17.01■□□□□ 0.31
TPM1-216ENST00000558910 MIER1Q8N108 512 aa17.01■□□□□ 0.31
TPM1-216ENST00000558910 TRPC5Q9UL62 973 aaPredicted RBP17■□□□□ 0.31
TPM1-216ENST00000558910 RBM6P78332 1123 aaKnown RBP16.99■□□□□ 0.31
TPM1-216ENST00000558910 FNBP4Q8N3X1 1017 aaPredicted RBP16.98■□□□□ 0.31
TPM1-216ENST00000558910 ABTB2Q8N961 1025 aa16.98■□□□□ 0.31
TPM1-216ENST00000558910 TMC1Q8TDI8 760 aa16.98■□□□□ 0.31
TPM1-216ENST00000558910 ITSN1Q15811 1721 aa16.97■□□□□ 0.31
TPM1-216ENST00000558910 PLEKHG3A1L390 1219 aa16.97■□□□□ 0.31
TPM1-216ENST00000558910 FAM83GA6ND36 823 aa16.97■□□□□ 0.31
TPM1-216ENST00000558910 ZC3H6P61129 1189 aaKnown RBP16.97■□□□□ 0.31
TPM1-216ENST00000558910 RALGAPBQ86X10 1494 aa16.97■□□□□ 0.31
TPM1-216ENST00000558910 CHRNA2Q15822 529 aa16.96■□□□□ 0.31
TPM1-216ENST00000558910 TRPM3Q9HCF6 1732 aaPredicted RBP16.96■□□□□ 0.3
TPM1-216ENST00000558910 SOX12O15370 315 aa16.95■□□□□ 0.3
TPM1-216ENST00000558910 UNC5CLQ8IV45 518 aa16.95■□□□□ 0.3
TPM1-216ENST00000558910 BCL9LQ86UU0 1499 aa16.94■□□□□ 0.3
TPM1-216ENST00000558910 ST20-MTHFSA0A0A6YYL1 179 aa16.94■□□□□ 0.3
TPM1-216ENST00000558910 A0A0G2JS52 829 aa16.94■□□□□ 0.3
TPM1-216ENST00000558910 MYT1Q01538 1121 aa16.94■□□□□ 0.3
TPM1-216ENST00000558910 PRDM11Q9NQV5 511 aa16.94■□□□□ 0.3
TPM1-216ENST00000558910 BTG4Q9NY30 223 aa16.94■□□□□ 0.3
TPM1-216ENST00000558910 RGS12O14924 1447 aa16.94■□□□□ 0.3
TPM1-216ENST00000558910 POLR3AO14802 1390 aaPredicted RBP16.93■□□□□ 0.3
TPM1-216ENST00000558910 PLCD3Q8N3E9 789 aa16.93■□□□□ 0.3
TPM1-216ENST00000558910 TOPAZ1Q8N9V7 1692 aa16.93■□□□□ 0.3
TPM1-216ENST00000558910 GJD4Q96KN9 370 aaPredicted RBP16.92■□□□□ 0.3
TPM1-216ENST00000558910 STRN4Q9NRL3 753 aa16.92■□□□□ 0.3
TPM1-216ENST00000558910 ATRNO75882 1429 aa16.92■□□□□ 0.3
TPM1-216ENST00000558910 ALS2Q96Q42 1657 aa16.91■□□□□ 0.3
TPM1-216ENST00000558910 MARF1Q9Y4F3 1742 aaKnown RBP16.91■□□□□ 0.3
TPM1-216ENST00000558910 NLRP6P59044 892 aa16.91■□□□□ 0.3
TPM1-216ENST00000558910 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.91■□□□□ 0.3
TPM1-216ENST00000558910 FBXO3Q9UK99 471 aa16.91■□□□□ 0.3
TPM1-216ENST00000558910 ABCA3Q99758 1704 aa16.9■□□□□ 0.3
TPM1-216ENST00000558910 KIAA0232Q92628 1395 aa16.89■□□□□ 0.3
TPM1-216ENST00000558910 ZRANB1Q9UGI0 708 aa16.89■□□□□ 0.29
TPM1-216ENST00000558910 SLIT2O94813 1529 aa16.89■□□□□ 0.29
TPM1-216ENST00000558910 NLRP13Q86W25 1043 aa16.88■□□□□ 0.29
TPM1-216ENST00000558910 SLC12A5Q9H2X9 1139 aa16.88■□□□□ 0.29
TPM1-216ENST00000558910 UPF1Q92900 1129 aaKnown RBP eCLIP16.87■□□□□ 0.29
TPM1-216ENST00000558910 POLR3GLQ9BT43 218 aa16.87■□□□□ 0.29
TPM1-216ENST00000558910 USP35Q9P2H5 1018 aa16.87■□□□□ 0.29
TPM1-216ENST00000558910 ATAD2Q6PL18 1390 aa16.87■□□□□ 0.29
TPM1-216ENST00000558910 KTN1Q86UP2 1357 aaKnown RBP16.87■□□□□ 0.29
TPM1-216ENST00000558910 USP6P35125 1406 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms