RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 ESCO1Q5FWF5 840 aa22.26■■□□□ 1.15
LDLR-206ENST00000557958 C19orf44Q9H6X5 657 aa22.26■■□□□ 1.15
LDLR-206ENST00000557958 PLEKHG3A1L390 1219 aa22.25■■□□□ 1.15
LDLR-206ENST00000557958 AEBP2Q6ZN18 517 aaPredicted RBP22.25■■□□□ 1.15
LDLR-206ENST00000557958 ZNF692Q9BU19 519 aaPredicted RBP22.25■■□□□ 1.15
LDLR-206ENST00000557958 STRCP1A6NGW2 1772 aa22.24■■□□□ 1.15
LDLR-206ENST00000557958 FYB1O15117 783 aa22.24■■□□□ 1.15
LDLR-206ENST00000557958 ATF3P18847 181 aa22.24■■□□□ 1.15
LDLR-206ENST00000557958 EDC4Q6P2E9 1401 aaKnown RBP22.24■■□□□ 1.15
LDLR-206ENST00000557958 CPSF1Q10570 1443 aaKnown RBP22.23■■□□□ 1.15
LDLR-206ENST00000557958 KIF20BQ96Q89 1820 aa22.23■■□□□ 1.15
LDLR-206ENST00000557958 CDC42BPGQ6DT37 1551 aa22.23■■□□□ 1.15
LDLR-206ENST00000557958 RNF123Q5XPI4 1314 aa22.22■■□□□ 1.15
LDLR-206ENST00000557958 RGPD8O14715 1765 aaPredicted RBP22.21■■□□□ 1.15
LDLR-206ENST00000557958 PHF8Q9UPP1 1060 aa22.2■■□□□ 1.14
LDLR-206ENST00000557958 ANKARQ7Z5J8 1434 aa22.2■■□□□ 1.14
LDLR-206ENST00000557958 SHPRHQ149N8 1683 aa22.2■■□□□ 1.14
LDLR-206ENST00000557958 NME9Q86XW9 330 aa22.2■■□□□ 1.14
LDLR-206ENST00000557958 ORAI2Q96SN7 254 aa22.2■■□□□ 1.14
LDLR-206ENST00000557958 FMN2Q9NZ56 1722 aa22.19■■□□□ 1.14
LDLR-206ENST00000557958 IRX6P78412 446 aaPredicted RBP22.18■■□□□ 1.14
LDLR-206ENST00000557958 CCDC146Q8IYE0 955 aa22.18■■□□□ 1.14
LDLR-206ENST00000557958 ZRANB1Q9UGI0 708 aa22.17■■□□□ 1.14
LDLR-206ENST00000557958 MSH6P52701 1360 aa22.17■■□□□ 1.14
LDLR-206ENST00000557958 PAK3O75914 559 aaPredicted RBP22.17■■□□□ 1.14
LDLR-206ENST00000557958 GOLGA2Q08379 1002 aa22.17■■□□□ 1.14
LDLR-206ENST00000557958 RCAN3Q9UKA8 241 aa22.17■■□□□ 1.14
LDLR-206ENST00000557958 ZNF521Q96K83 1311 aa22.16■■□□□ 1.14
LDLR-206ENST00000557958 APAF1O14727 1248 aa22.16■■□□□ 1.14
LDLR-206ENST00000557958 PPP4R2Q9NY27 417 aa22.16■■□□□ 1.14
LDLR-206ENST00000557958 ITSN1Q15811 1721 aa22.16■■□□□ 1.14
LDLR-206ENST00000557958 RUNDC1Q96C34 613 aa22.15■■□□□ 1.14
LDLR-206ENST00000557958 TOPAZ1Q8N9V7 1692 aa22.15■■□□□ 1.14
LDLR-206ENST00000557958 TTC21BQ7Z4L5 1316 aa22.15■■□□□ 1.14
LDLR-206ENST00000557958 PSME1Q06323 249 aa22.15■■□□□ 1.14
LDLR-206ENST00000557958 CADPS2Q86UW7 1296 aa22.15■■□□□ 1.14
LDLR-206ENST00000557958 CDCA7LQ96GN5 454 aa22.15■■□□□ 1.14
LDLR-206ENST00000557958 MON2Q7Z3U7 1717 aa22.14■■□□□ 1.14
LDLR-206ENST00000557958 FOXO3O43524 673 aa22.13■■□□□ 1.13
LDLR-206ENST00000557958 LRRC7Q96NW7 1537 aa22.13■■□□□ 1.13
LDLR-206ENST00000557958 USP6P35125 1406 aa22.13■■□□□ 1.13
LDLR-206ENST00000557958 COG3Q96JB2 828 aa22.13■■□□□ 1.13
LDLR-206ENST00000557958 AKAP12Q02952 1782 aa22.13■■□□□ 1.13
LDLR-206ENST00000557958 NCOA3Q9Y6Q9 1424 aa22.12■■□□□ 1.13
LDLR-206ENST00000557958 FBLN1P23142 703 aa22.12■■□□□ 1.13
LDLR-206ENST00000557958 XPCQ01831 940 aaPredicted RBP22.12■■□□□ 1.13
LDLR-206ENST00000557958 NUTM2GQ5VZR2 741 aa22.11■■□□□ 1.13
LDLR-206ENST00000557958 U2AF1L5P0DN76 240 aaPredicted RBP22.1■■□□□ 1.13
LDLR-206ENST00000557958 U2AF1Q01081 240 aaKnown RBP eCLIP22.1■■□□□ 1.13
LDLR-206ENST00000557958 NCBP3Q53F19 620 aaKnown RBP22.1■■□□□ 1.13
LDLR-206ENST00000557958 C1orf167Q5SNV9 1468 aa22.1■■□□□ 1.13
LDLR-206ENST00000557958 SOX12O15370 315 aa22.09■■□□□ 1.13
LDLR-206ENST00000557958 COL3A1P02461 1466 aaPredicted RBP22.09■■□□□ 1.13
LDLR-206ENST00000557958 PNPLA6Q8IY17 1366 aa22.09■■□□□ 1.13
LDLR-206ENST00000557958 PPM1GO15355 546 aaPredicted RBP22.09■■□□□ 1.13
LDLR-206ENST00000557958 RRP1P56182 461 aaKnown RBP22.09■■□□□ 1.13
LDLR-206ENST00000557958 PNNQ9H307 717 aaKnown RBP22.09■■□□□ 1.13
LDLR-206ENST00000557958 E9PSI1 815 aa22.08■■□□□ 1.13
LDLR-206ENST00000557958 PLEKHG5O94827 1062 aa22.08■■□□□ 1.13
LDLR-206ENST00000557958 AATKQ6ZMQ8 1374 aa22.08■■□□□ 1.12
LDLR-206ENST00000557958 IQSEC2Q5JU85 1478 aa22.07■■□□□ 1.12
LDLR-206ENST00000557958 DIAPH1O60610 1272 aaKnown RBP22.07■■□□□ 1.12
LDLR-206ENST00000557958 SLFN5Q08AF3 891 aa22.07■■□□□ 1.12
LDLR-206ENST00000557958 DUSP27Q5VZP5 1158 aa22.07■■□□□ 1.12
LDLR-206ENST00000557958 ABTB2Q8N961 1025 aa22.07■■□□□ 1.12
LDLR-206ENST00000557958 MST1RQ04912 1400 aa22.06■■□□□ 1.12
LDLR-206ENST00000557958 LMOD2Q6P5Q4 547 aa22.06■■□□□ 1.12
LDLR-206ENST00000557958 DDX17Q92841 729 aaKnown RBP22.06■■□□□ 1.12
LDLR-206ENST00000557958 TTC21AQ8NDW8 1320 aa22.06■■□□□ 1.12
LDLR-206ENST00000557958 NLRP6P59044 892 aa22.05■■□□□ 1.12
LDLR-206ENST00000557958 DCCP43146 1447 aa22.05■■□□□ 1.12
LDLR-206ENST00000557958 TCP11L2Q8N4U5 519 aa22.05■■□□□ 1.12
LDLR-206ENST00000557958 U2SURPO15042 1029 aaKnown RBP22.04■■□□□ 1.12
LDLR-206ENST00000557958 KRT28Q7Z3Y7 464 aa22.04■■□□□ 1.12
LDLR-206ENST00000557958 SLAIN2Q9P270 581 aa22.04■■□□□ 1.12
LDLR-206ENST00000557958 XIRP1Q702N8 1843 aaKnown RBP22.03■■□□□ 1.12
LDLR-206ENST00000557958 CCDC27Q2M243 656 aa22.03■■□□□ 1.12
LDLR-206ENST00000557958 NRKQ7Z2Y5 1582 aa22.03■■□□□ 1.12
LDLR-206ENST00000557958 WWC1Q8IX03 1113 aa22.03■■□□□ 1.12
LDLR-206ENST00000557958 POLKQ9UBT6 870 aa22.03■■□□□ 1.12
LDLR-206ENST00000557958 SSH2Q76I76 1423 aa22.02■■□□□ 1.12
LDLR-206ENST00000557958 CDK12Q9NYV4 1490 aaPredicted RBP22.02■■□□□ 1.12
LDLR-206ENST00000557958 RRS1Q15050 365 aaKnown RBP22.02■■□□□ 1.12
LDLR-206ENST00000557958 TRMT2AQ8IZ69 625 aaKnown RBP22.02■■□□□ 1.12
LDLR-206ENST00000557958 MAPK8IP3Q9UPT6 1336 aa22.01■■□□□ 1.11
LDLR-206ENST00000557958 WDR63Q8IWG1 891 aa22■■□□□ 1.11
LDLR-206ENST00000557958 EMILIN1Q9Y6C2 1016 aa21.99■■□□□ 1.11
LDLR-206ENST00000557958 PHF23Q9BUL5 403 aaPredicted RBP21.98■■□□□ 1.11
LDLR-206ENST00000557958 NEFMP07197 916 aa21.98■■□□□ 1.11
LDLR-206ENST00000557958 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.98■■□□□ 1.11
LDLR-206ENST00000557958 BRINP3Q76B58 766 aa21.97■■□□□ 1.11
LDLR-206ENST00000557958 FCHSD2O94868 740 aa21.96■■□□□ 1.11
LDLR-206ENST00000557958 NEUROD2Q15784 382 aa21.96■■□□□ 1.11
LDLR-206ENST00000557958 MAP2P11137 1827 aaKnown RBP21.96■■□□□ 1.11
LDLR-206ENST00000557958 OVOS2A0A0J9YW53 1432 aa21.95■■□□□ 1.1
LDLR-206ENST00000557958 OVOS2Q6IE36 1432 aa21.95■■□□□ 1.1
LDLR-206ENST00000557958 PLEKHF1Q96S99 279 aa21.95■■□□□ 1.1
LDLR-206ENST00000557958 TSHZ2Q9NRE2 1034 aa21.95■■□□□ 1.1
LDLR-206ENST00000557958 RRP7AQ9Y3A4 280 aaKnown RBP21.94■■□□□ 1.1
LDLR-206ENST00000557958 NPHP3Q7Z494 1330 aa21.94■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms