RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 LMTK3Q96Q04 1460 aa16.57■□□□□ 0.24
SHMT2-233ENST00000557529 C14orf37Q86TY3 774 aa16.56■□□□□ 0.24
SHMT2-233ENST00000557529 PROSER2Q86WR7 435 aaPredicted RBP16.56■□□□□ 0.24
SHMT2-233ENST00000557529 NUDCQ9Y266 331 aa16.56■□□□□ 0.24
SHMT2-233ENST00000557529 AATKQ6ZMQ8 1374 aa16.56■□□□□ 0.24
SHMT2-233ENST00000557529 HSPA2P54652 639 aa16.55■□□□□ 0.24
SHMT2-233ENST00000557529 SSH2Q76I76 1423 aa16.55■□□□□ 0.24
SHMT2-233ENST00000557529 PMFBP1Q8TBY8 1022 aa16.55■□□□□ 0.24
SHMT2-233ENST00000557529 SHPRHQ149N8 1683 aa16.54■□□□□ 0.24
SHMT2-233ENST00000557529 PNPLA6Q8IY17 1366 aa16.54■□□□□ 0.24
SHMT2-233ENST00000557529 NCOA3Q9Y6Q9 1424 aa16.54■□□□□ 0.24
SHMT2-233ENST00000557529 NEFLP07196 543 aa16.53■□□□□ 0.24
SHMT2-233ENST00000557529 COL3A1P02461 1466 aaPredicted RBP16.53■□□□□ 0.24
SHMT2-233ENST00000557529 PHF8Q9UPP1 1060 aa16.52■□□□□ 0.24
SHMT2-233ENST00000557529 POLKQ9UBT6 870 aa16.51■□□□□ 0.23
SHMT2-233ENST00000557529 RGPD8O14715 1765 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-233ENST00000557529 OVOS2A0A0J9YW53 1432 aa16.51■□□□□ 0.23
SHMT2-233ENST00000557529 OVOS2Q6IE36 1432 aa16.51■□□□□ 0.23
SHMT2-233ENST00000557529 USP31Q70CQ4 1352 aa16.51■□□□□ 0.23
SHMT2-233ENST00000557529 SENP3-EIF4A1A0A087X0R7 540 aa16.51■□□□□ 0.23
SHMT2-233ENST00000557529 DIAPH1O60610 1272 aaKnown RBP16.51■□□□□ 0.23
SHMT2-233ENST00000557529 CCDC146Q8IYE0 955 aa16.51■□□□□ 0.23
SHMT2-233ENST00000557529 RUNDC1Q96C34 613 aa16.51■□□□□ 0.23
SHMT2-233ENST00000557529 RBM33Q96EV2 1170 aaKnown RBP16.51■□□□□ 0.23
SHMT2-233ENST00000557529 ZRANB1Q9UGI0 708 aa16.51■□□□□ 0.23
SHMT2-233ENST00000557529 SALL2Q9Y467 1007 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-233ENST00000557529 C19orf44Q9H6X5 657 aa16.5■□□□□ 0.23
SHMT2-233ENST00000557529 CDK12Q9NYV4 1490 aaPredicted RBP16.5■□□□□ 0.23
SHMT2-233ENST00000557529 U2AF1L5P0DN76 240 aaPredicted RBP16.49■□□□□ 0.23
SHMT2-233ENST00000557529 U2AF1Q01081 240 aaKnown RBP eCLIP16.49■□□□□ 0.23
SHMT2-233ENST00000557529 APAF1O14727 1248 aa16.48■□□□□ 0.23
SHMT2-233ENST00000557529 NCBP3Q53F19 620 aaKnown RBP16.48■□□□□ 0.23
SHMT2-233ENST00000557529 PNNQ9H307 717 aaKnown RBP16.48■□□□□ 0.23
SHMT2-233ENST00000557529 SUPT16HQ9Y5B9 1047 aaKnown RBP16.48■□□□□ 0.23
SHMT2-233ENST00000557529 DCCP43146 1447 aa16.48■□□□□ 0.23
SHMT2-233ENST00000557529 ESCO1Q5FWF5 840 aa16.47■□□□□ 0.23
SHMT2-233ENST00000557529 TMEM94Q12767 1356 aa16.47■□□□□ 0.23
SHMT2-233ENST00000557529 ZNF521Q96K83 1311 aa16.46■□□□□ 0.23
SHMT2-233ENST00000557529 U2SURPO15042 1029 aaKnown RBP16.46■□□□□ 0.23
SHMT2-233ENST00000557529 PPM1GO15355 546 aaPredicted RBP16.46■□□□□ 0.23
SHMT2-233ENST00000557529 STRCQ7RTU9 1775 aa16.45■□□□□ 0.22
SHMT2-233ENST00000557529 EMILIN1Q9Y6C2 1016 aa16.45■□□□□ 0.22
SHMT2-233ENST00000557529 MAP2P11137 1827 aaKnown RBP16.45■□□□□ 0.22
SHMT2-233ENST00000557529 LRRC7Q96NW7 1537 aa16.44■□□□□ 0.22
SHMT2-233ENST00000557529 ATF3P18847 181 aa16.44■□□□□ 0.22
SHMT2-233ENST00000557529 FBLN1P23142 703 aa16.44■□□□□ 0.22
SHMT2-233ENST00000557529 GOLGA2Q08379 1002 aa16.44■□□□□ 0.22
SHMT2-233ENST00000557529 IQSEC2Q5JU85 1478 aa16.44■□□□□ 0.22
SHMT2-233ENST00000557529 STRCP1A6NGW2 1772 aa16.43■□□□□ 0.22
SHMT2-233ENST00000557529 C1orf167Q5SNV9 1468 aa16.43■□□□□ 0.22
SHMT2-233ENST00000557529 PSME1Q06323 249 aa16.43■□□□□ 0.22
SHMT2-233ENST00000557529 PIK3C2AO00443 1686 aa16.42■□□□□ 0.22
SHMT2-233ENST00000557529 USP54Q70EL1 1684 aa16.42■□□□□ 0.22
SHMT2-233ENST00000557529 FCHSD2O94868 740 aa16.42■□□□□ 0.22
SHMT2-233ENST00000557529 NLRP6P59044 892 aa16.42■□□□□ 0.22
SHMT2-233ENST00000557529 FKBP8Q14318 412 aa16.42■□□□□ 0.22
SHMT2-233ENST00000557529 RRS1Q15050 365 aaKnown RBP16.42■□□□□ 0.22
SHMT2-233ENST00000557529 TCP11L2Q8N4U5 519 aa16.42■□□□□ 0.22
SHMT2-233ENST00000557529 KIF1AQ12756 1690 aa16.42■□□□□ 0.22
SHMT2-233ENST00000557529 IL13P35225 146 aa16.41■□□□□ 0.22
SHMT2-233ENST00000557529 CCDC27Q2M243 656 aa16.41■□□□□ 0.22
SHMT2-233ENST00000557529 CADPS2Q86UW7 1296 aa16.41■□□□□ 0.22
SHMT2-233ENST00000557529 ABTB2Q8N961 1025 aa16.41■□□□□ 0.22
SHMT2-233ENST00000557529 CDCA7LQ96GN5 454 aa16.41■□□□□ 0.22
SHMT2-233ENST00000557529 MAPK8IP3Q9UPT6 1336 aa16.41■□□□□ 0.22
SHMT2-233ENST00000557529 MSH6P52701 1360 aa16.41■□□□□ 0.22
SHMT2-233ENST00000557529 PAK3O75914 559 aaPredicted RBP16.4■□□□□ 0.22
SHMT2-233ENST00000557529 ORAI2Q96SN7 254 aa16.4■□□□□ 0.22
SHMT2-233ENST00000557529 DMRT2Q9Y5R5 561 aa16.4■□□□□ 0.22
SHMT2-233ENST00000557529 MST1RQ04912 1400 aa16.39■□□□□ 0.21
SHMT2-233ENST00000557529 PLEKHF1Q96S99 279 aa16.39■□□□□ 0.21
SHMT2-233ENST00000557529 KIF24Q5T7B8 1368 aa16.39■□□□□ 0.21
SHMT2-233ENST00000557529 E9PSI1 815 aa16.38■□□□□ 0.21
SHMT2-233ENST00000557529 NEFMP07197 916 aa16.38■□□□□ 0.21
SHMT2-233ENST00000557529 ERICH6BQ5W0A0 696 aa16.38■□□□□ 0.21
SHMT2-233ENST00000557529 PHF23Q9BUL5 403 aaPredicted RBP16.38■□□□□ 0.21
SHMT2-233ENST00000557529 RNF123Q5XPI4 1314 aa16.38■□□□□ 0.21
SHMT2-233ENST00000557529 SBNO1A3KN83 1393 aa16.38■□□□□ 0.21
SHMT2-233ENST00000557529 SLFN5Q08AF3 891 aa16.38■□□□□ 0.21
SHMT2-233ENST00000557529 WWC1Q8IX03 1113 aa16.38■□□□□ 0.21
SHMT2-233ENST00000557529 MAP3K19Q56UN5 1328 aa16.37■□□□□ 0.21
SHMT2-233ENST00000557529 FLT4P35916 1363 aa16.37■□□□□ 0.21
SHMT2-233ENST00000557529 FOXO3O43524 673 aa16.37■□□□□ 0.21
SHMT2-233ENST00000557529 WDR63Q8IWG1 891 aa16.37■□□□□ 0.21
SHMT2-233ENST00000557529 RSPH6AQ9H0K4 717 aa16.37■□□□□ 0.21
SHMT2-233ENST00000557529 RCAN3Q9UKA8 241 aa16.37■□□□□ 0.21
SHMT2-233ENST00000557529 DUSP27Q5VZP5 1158 aa16.36■□□□□ 0.21
SHMT2-233ENST00000557529 TRMT2AQ8IZ69 625 aaKnown RBP16.36■□□□□ 0.21
SHMT2-233ENST00000557529 RRP7AQ9Y3A4 280 aaKnown RBP16.36■□□□□ 0.21
SHMT2-233ENST00000557529 SOX12O15370 315 aa16.35■□□□□ 0.21
SHMT2-233ENST00000557529 TMPOP42166 694 aaKnown RBP16.35■□□□□ 0.21
SHMT2-233ENST00000557529 NEUROD2Q15784 382 aa16.35■□□□□ 0.21
SHMT2-233ENST00000557529 KRT28Q7Z3Y7 464 aa16.35■□□□□ 0.21
SHMT2-233ENST00000557529 PRKAR2BP31323 418 aa16.34■□□□□ 0.21
SHMT2-233ENST00000557529 AMPHP49418 695 aa16.34■□□□□ 0.21
SHMT2-233ENST00000557529 EIF4A2Q14240 407 aaKnown RBP16.34■□□□□ 0.21
SHMT2-233ENST00000557529 NUTM2GQ5VZR2 741 aa16.34■□□□□ 0.21
SHMT2-233ENST00000557529 KCNH5Q8NCM2 988 aa16.34■□□□□ 0.21
SHMT2-233ENST00000557529 ZNF335Q9H4Z2 1342 aaPredicted RBP16.34■□□□□ 0.21
SHMT2-233ENST00000557529 PEAK1Q9H792 1746 aa16.33■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms