RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 DZIP1LQ8IYY4 767 aaKnown RBP20.66■□□□□ 0.9
SHMT2-232ENST00000557487 TBC1D2Q9BYX2 928 aa20.66■□□□□ 0.9
SHMT2-232ENST00000557487 TRAK1Q9UPV9 953 aa20.66■□□□□ 0.9
SHMT2-232ENST00000557487 ABCC11Q96J66 1382 aa20.65■□□□□ 0.9
SHMT2-232ENST00000557487 CAMSAP1Q5T5Y3 1602 aa20.65■□□□□ 0.9
SHMT2-232ENST00000557487 IL16Q14005 1332 aa20.65■□□□□ 0.9
SHMT2-232ENST00000557487 FBXO31Q5XUX0 539 aaPredicted RBP20.65■□□□□ 0.9
SHMT2-232ENST00000557487 FTSJ3Q8IY81 847 aaKnown RBP20.64■□□□□ 0.89
SHMT2-232ENST00000557487 RSPH6AQ9H0K4 717 aa20.64■□□□□ 0.89
SHMT2-232ENST00000557487 SLKQ9H2G2 1235 aaPredicted RBP20.63■□□□□ 0.89
SHMT2-232ENST00000557487 DDX19BQ9UMR2 479 aa20.63■□□□□ 0.89
SHMT2-232ENST00000557487 POGKQ9P215 609 aa20.63■□□□□ 0.89
SHMT2-232ENST00000557487 TNRQ92752 1358 aa20.62■□□□□ 0.89
SHMT2-232ENST00000557487 SPATA31D1Q6ZQQ2 1576 aa20.62■□□□□ 0.89
SHMT2-232ENST00000557487 U2AF1L5P0DN76 240 aaPredicted RBP20.61■□□□□ 0.89
SHMT2-232ENST00000557487 TNNT2P45379 298 aaPredicted RBP20.61■□□□□ 0.89
SHMT2-232ENST00000557487 U2AF1Q01081 240 aaKnown RBP eCLIP20.61■□□□□ 0.89
SHMT2-232ENST00000557487 TULP4Q9NRJ4 1543 aa20.6■□□□□ 0.89
SHMT2-232ENST00000557487 CHMP5Q9NZZ3 219 aa20.6■□□□□ 0.89
SHMT2-232ENST00000557487 ARHGEF28Q8N1W1 1705 aaKnown RBP20.6■□□□□ 0.89
SHMT2-232ENST00000557487 MED14O60244 1454 aa20.59■□□□□ 0.89
SHMT2-232ENST00000557487 CHGAP10645 457 aaKnown RBP20.59■□□□□ 0.89
SHMT2-232ENST00000557487 PNNQ9H307 717 aaKnown RBP20.59■□□□□ 0.89
SHMT2-232ENST00000557487 VGFO15240 615 aaPredicted RBP20.58■□□□□ 0.88
SHMT2-232ENST00000557487 BCL2L13Q9BXK5 485 aa20.58■□□□□ 0.88
SHMT2-232ENST00000557487 C22orf23Q9BZE7 217 aa20.58■□□□□ 0.88
SHMT2-232ENST00000557487 TNNQ9UQP3 1299 aa20.58■□□□□ 0.88
SHMT2-232ENST00000557487 HSPA2P54652 639 aa20.57■□□□□ 0.88
SHMT2-232ENST00000557487 PIK3C2BO00750 1634 aa20.57■□□□□ 0.88
SHMT2-232ENST00000557487 MCM4P33991 863 aa20.57■□□□□ 0.88
SHMT2-232ENST00000557487 SMC5Q8IY18 1101 aa20.57■□□□□ 0.88
SHMT2-232ENST00000557487 SMC4Q9NTJ3 1288 aa20.57■□□□□ 0.88
SHMT2-232ENST00000557487 ZNF142P52746 1687 aaPredicted RBP20.56■□□□□ 0.88
SHMT2-232ENST00000557487 A2ML1A8K2U0 1454 aa20.56■□□□□ 0.88
SHMT2-232ENST00000557487 ATF7IPQ6VMQ6 1270 aa20.56■□□□□ 0.88
SHMT2-232ENST00000557487 ZFYVE9O95405 1425 aa20.56■□□□□ 0.88
SHMT2-232ENST00000557487 KIF16BQ96L93 1317 aa20.55■□□□□ 0.88
SHMT2-232ENST00000557487 IPO8O15397 1037 aaKnown RBP20.55■□□□□ 0.88
SHMT2-232ENST00000557487 PLEKHF1Q96S99 279 aa20.55■□□□□ 0.88
SHMT2-232ENST00000557487 ISY1Q9ULR0 285 aaKnown RBP20.55■□□□□ 0.88
SHMT2-232ENST00000557487 CEP170BQ9Y4F5 1589 aaPredicted RBP20.55■□□□□ 0.88
SHMT2-232ENST00000557487 COL3A1P02461 1466 aaPredicted RBP20.54■□□□□ 0.88
SHMT2-232ENST00000557487 FSD2A1L4K1 749 aa20.54■□□□□ 0.88
SHMT2-232ENST00000557487 TMPOP42166 694 aaKnown RBP20.54■□□□□ 0.88
SHMT2-232ENST00000557487 GOLGA6L3A6NEY3 463 aa20.53■□□□□ 0.88
SHMT2-232ENST00000557487 TRIM27P14373 513 aa20.53■□□□□ 0.88
SHMT2-232ENST00000557487 ZNF428Q96B54 188 aa20.53■□□□□ 0.88
SHMT2-232ENST00000557487 ANKRD26Q9UPS8 1709 aa20.53■□□□□ 0.88
SHMT2-232ENST00000557487 NEXMIFQ5QGS0 1516 aa20.53■□□□□ 0.88
SHMT2-232ENST00000557487 CHMP4BQ9H444 224 aaKnown RBP20.53■□□□□ 0.88
SHMT2-232ENST00000557487 ATAD2Q6PL18 1390 aa20.52■□□□□ 0.88
SHMT2-232ENST00000557487 DDX11L8A8MPP1 907 aa20.52■□□□□ 0.88
SHMT2-232ENST00000557487 PRKCSHP14314 528 aaPredicted RBP20.52■□□□□ 0.88
SHMT2-232ENST00000557487 TMEM132EQ6IEE7 984 aa20.52■□□□□ 0.88
SHMT2-232ENST00000557487 HSCBQ8IWL3 235 aa20.52■□□□□ 0.88
SHMT2-232ENST00000557487 EXOSC9Q06265 439 aaKnown RBP20.51■□□□□ 0.87
SHMT2-232ENST00000557487 ALDH1L2Q3SY69 923 aa20.51■□□□□ 0.87
SHMT2-232ENST00000557487 SNX21Q969T3 373 aa20.51■□□□□ 0.87
SHMT2-232ENST00000557487 BRPF1P55201 1214 aaPredicted RBP20.5■□□□□ 0.87
SHMT2-232ENST00000557487 SSH1Q8WYL5 1049 aa20.5■□□□□ 0.87
SHMT2-232ENST00000557487 NCOA3Q9Y6Q9 1424 aa20.5■□□□□ 0.87
SHMT2-232ENST00000557487 RBM25P49756 843 aaKnown RBP20.49■□□□□ 0.87
SHMT2-232ENST00000557487 ITPRIPQ8IWB1 547 aa20.49■□□□□ 0.87
SHMT2-232ENST00000557487 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.49■□□□□ 0.87
SHMT2-232ENST00000557487 TRIM35Q9UPQ4 493 aa20.49■□□□□ 0.87
SHMT2-232ENST00000557487 ZBTB40Q9NUA8 1239 aa20.49■□□□□ 0.87
SHMT2-232ENST00000557487 CIZ1Q9ULV3 898 aaPredicted RBP20.49■□□□□ 0.87
SHMT2-232ENST00000557487 PTMSP20962 102 aa20.48■□□□□ 0.87
SHMT2-232ENST00000557487 MFAP1P55081 439 aaKnown RBP20.48■□□□□ 0.87
SHMT2-232ENST00000557487 TERF2IPQ9NYB0 399 aa20.48■□□□□ 0.87
SHMT2-232ENST00000557487 A0A1W2PP64 1363 aa20.48■□□□□ 0.87
SHMT2-232ENST00000557487 EIF5BO60841 1220 aaKnown RBP20.47■□□□□ 0.87
SHMT2-232ENST00000557487 TSR2Q969E8 191 aaKnown RBP20.47■□□□□ 0.87
SHMT2-232ENST00000557487 CDC42BPGQ6DT37 1551 aa20.47■□□□□ 0.87
SHMT2-232ENST00000557487 PNPLA6Q8IY17 1366 aa20.46■□□□□ 0.87
SHMT2-232ENST00000557487 NUCB1Q02818 461 aa20.46■□□□□ 0.87
SHMT2-232ENST00000557487 THEMISQ8N1K5 641 aaPredicted RBP20.46■□□□□ 0.87
SHMT2-232ENST00000557487 SLC52A1Q9NWF4 448 aa20.46■□□□□ 0.87
SHMT2-232ENST00000557487 MRE11P49959 708 aa20.45■□□□□ 0.86
SHMT2-232ENST00000557487 NOB1Q9ULX3 412 aaKnown RBP20.45■□□□□ 0.86
SHMT2-232ENST00000557487 PPIP5K1Q6PFW1 1433 aa20.45■□□□□ 0.86
SHMT2-232ENST00000557487 CFAP65Q6ZU64 1925 aaKnown RBP20.45■□□□□ 0.86
SHMT2-232ENST00000557487 U2SURPO15042 1029 aaKnown RBP20.45■□□□□ 0.86
SHMT2-232ENST00000557487 TRAK2O60296 914 aa20.45■□□□□ 0.86
SHMT2-232ENST00000557487 XRCC6P12956 609 aaKnown RBP eCLIP20.43■□□□□ 0.86
SHMT2-232ENST00000557487 IDI1Q13907 227 aa20.43■□□□□ 0.86
SHMT2-232ENST00000557487 CABP2Q9NPB3 220 aa20.43■□□□□ 0.86
SHMT2-232ENST00000557487 STRCQ7RTU9 1775 aa20.43■□□□□ 0.86
SHMT2-232ENST00000557487 DDIT3P35638 169 aa20.43■□□□□ 0.86
SHMT2-232ENST00000557487 TMEM57Q8N5G2 664 aa20.43■□□□□ 0.86
SHMT2-232ENST00000557487 DIAPH1O60610 1272 aaKnown RBP20.42■□□□□ 0.86
SHMT2-232ENST00000557487 BMP2KLQ5H9B9 411 aa20.42■□□□□ 0.86
SHMT2-232ENST00000557487 ZNF692Q9BU19 519 aaPredicted RBP20.42■□□□□ 0.86
SHMT2-232ENST00000557487 FCHSD2O94868 740 aa20.41■□□□□ 0.86
SHMT2-232ENST00000557487 RIPK4P57078 832 aa20.41■□□□□ 0.86
SHMT2-232ENST00000557487 ARHGAP45Q92619 1136 aa20.41■□□□□ 0.86
SHMT2-232ENST00000557487 GCC1Q96CN9 775 aa20.41■□□□□ 0.86
SHMT2-232ENST00000557487 CALD1Q05682 793 aaKnown RBP20.41■□□□□ 0.86
SHMT2-232ENST00000557487 CHD1LQ86WJ1 897 aa20.4■□□□□ 0.86
SHMT2-232ENST00000557487 FYB1O15117 783 aa20.39■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms