RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 RUNDC1Q96C34 613 aa16.62■□□□□ 0.25
SHMT2-229ENST00000557348 AATKQ6ZMQ8 1374 aa16.62■□□□□ 0.25
SHMT2-229ENST00000557348 AKAP12Q02952 1782 aa16.61■□□□□ 0.25
SHMT2-229ENST00000557348 PNPLA6Q8IY17 1366 aa16.6■□□□□ 0.25
SHMT2-229ENST00000557348 PPP4R2Q9NY27 417 aa16.59■□□□□ 0.25
SHMT2-229ENST00000557348 RCAN3Q9UKA8 241 aa16.59■□□□□ 0.25
SHMT2-229ENST00000557348 PRR36Q9H6K5 1346 aa16.58■□□□□ 0.25
SHMT2-229ENST00000557348 COL3A1P02461 1466 aaPredicted RBP16.58■□□□□ 0.24
SHMT2-229ENST00000557348 APAF1O14727 1248 aa16.58■□□□□ 0.24
SHMT2-229ENST00000557348 COG3Q96JB2 828 aa16.58■□□□□ 0.24
SHMT2-229ENST00000557348 SALL2Q9Y467 1007 aaPredicted RBP16.58■□□□□ 0.24
SHMT2-229ENST00000557348 NPHP4O75161 1426 aaPredicted RBP16.57■□□□□ 0.24
SHMT2-229ENST00000557348 IQSEC2Q5JU85 1478 aa16.57■□□□□ 0.24
SHMT2-229ENST00000557348 E9PSI1 815 aa16.56■□□□□ 0.24
SHMT2-229ENST00000557348 CCDC27Q2M243 656 aa16.56■□□□□ 0.24
SHMT2-229ENST00000557348 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.56■□□□□ 0.24
SHMT2-229ENST00000557348 TTC21AQ8NDW8 1320 aa16.56■□□□□ 0.24
SHMT2-229ENST00000557348 USP6P35125 1406 aa16.56■□□□□ 0.24
SHMT2-229ENST00000557348 CDK12Q9NYV4 1490 aaPredicted RBP16.55■□□□□ 0.24
SHMT2-229ENST00000557348 NRKQ7Z2Y5 1582 aa16.55■□□□□ 0.24
SHMT2-229ENST00000557348 DIAPH1O60610 1272 aaKnown RBP16.55■□□□□ 0.24
SHMT2-229ENST00000557348 CCDC146Q8IYE0 955 aa16.55■□□□□ 0.24
SHMT2-229ENST00000557348 U2AF1L5P0DN76 240 aaPredicted RBP16.54■□□□□ 0.24
SHMT2-229ENST00000557348 KCNA6P17658 529 aa16.54■□□□□ 0.24
SHMT2-229ENST00000557348 RRP1P56182 461 aaKnown RBP16.54■□□□□ 0.24
SHMT2-229ENST00000557348 U2AF1Q01081 240 aaKnown RBP eCLIP16.54■□□□□ 0.24
SHMT2-229ENST00000557348 ACEP12821 1306 aa16.54■□□□□ 0.24
SHMT2-229ENST00000557348 CHD2O14647 1828 aaKnown RBP16.54■□□□□ 0.24
SHMT2-229ENST00000557348 SLFN5Q08AF3 891 aa16.53■□□□□ 0.24
SHMT2-229ENST00000557348 HSPA2P54652 639 aa16.53■□□□□ 0.24
SHMT2-229ENST00000557348 DUSP27Q5VZP5 1158 aa16.53■□□□□ 0.24
SHMT2-229ENST00000557348 WDR63Q8IWG1 891 aa16.53■□□□□ 0.24
SHMT2-229ENST00000557348 CDCA7LQ96GN5 454 aa16.53■□□□□ 0.24
SHMT2-229ENST00000557348 TTC21BQ7Z4L5 1316 aa16.52■□□□□ 0.24
SHMT2-229ENST00000557348 TRMT2AQ8IZ69 625 aaKnown RBP16.52■□□□□ 0.23
SHMT2-229ENST00000557348 NEFMP07197 916 aa16.51■□□□□ 0.23
SHMT2-229ENST00000557348 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-229ENST00000557348 PHF23Q9BUL5 403 aaPredicted RBP16.51■□□□□ 0.23
SHMT2-229ENST00000557348 POLKQ9UBT6 870 aa16.51■□□□□ 0.23
SHMT2-229ENST00000557348 MAPK8IP3Q9UPT6 1336 aa16.51■□□□□ 0.23
SHMT2-229ENST00000557348 NKTRP30414 1462 aaKnown RBP16.51■□□□□ 0.23
SHMT2-229ENST00000557348 FMN2Q9NZ56 1722 aa16.51■□□□□ 0.23
SHMT2-229ENST00000557348 MSH5O43196 834 aa16.5■□□□□ 0.23
SHMT2-229ENST00000557348 FCHSD2O94868 740 aa16.5■□□□□ 0.23
SHMT2-229ENST00000557348 NME9Q86XW9 330 aa16.5■□□□□ 0.23
SHMT2-229ENST00000557348 WWC1Q8IX03 1113 aa16.5■□□□□ 0.23
SHMT2-229ENST00000557348 TCP11L2Q8N4U5 519 aa16.5■□□□□ 0.23
SHMT2-229ENST00000557348 OVOS2A0A0J9YW53 1432 aa16.5■□□□□ 0.23
SHMT2-229ENST00000557348 OVOS2Q6IE36 1432 aa16.5■□□□□ 0.23
SHMT2-229ENST00000557348 SSH2Q76I76 1423 aa16.5■□□□□ 0.23
SHMT2-229ENST00000557348 ADGRL3Q9HAR2 1447 aa16.5■□□□□ 0.23
SHMT2-229ENST00000557348 NWD1Q149M9 1564 aa16.5■□□□□ 0.23
SHMT2-229ENST00000557348 SENP3-EIF4A1A0A087X0R7 540 aa16.5■□□□□ 0.23
SHMT2-229ENST00000557348 LRRC7Q96NW7 1537 aa16.49■□□□□ 0.23
SHMT2-229ENST00000557348 U2SURPO15042 1029 aaKnown RBP16.49■□□□□ 0.23
SHMT2-229ENST00000557348 IRX6P78412 446 aaPredicted RBP16.49■□□□□ 0.23
SHMT2-229ENST00000557348 NGDNQ8NEJ9 315 aaKnown RBP16.48■□□□□ 0.23
SHMT2-229ENST00000557348 USP31Q70CQ4 1352 aa16.47■□□□□ 0.23
SHMT2-229ENST00000557348 NCKAP5LQ9HCH0 1330 aa16.47■□□□□ 0.23
SHMT2-229ENST00000557348 MYH16Q9H6N6 1097 aa16.46■□□□□ 0.23
SHMT2-229ENST00000557348 NALCNQ8IZF0 1738 aa16.46■□□□□ 0.23
SHMT2-229ENST00000557348 PLEKHF1Q96S99 279 aa16.45■□□□□ 0.22
SHMT2-229ENST00000557348 IL16Q14005 1332 aa16.44■□□□□ 0.22
SHMT2-229ENST00000557348 KIF24Q5T7B8 1368 aa16.44■□□□□ 0.22
SHMT2-229ENST00000557348 CT47B1P0C2W7 299 aaPredicted RBP16.43■□□□□ 0.22
SHMT2-229ENST00000557348 MAP2P11137 1827 aaKnown RBP16.42■□□□□ 0.22
SHMT2-229ENST00000557348 USP54Q70EL1 1684 aa16.42■□□□□ 0.22
SHMT2-229ENST00000557348 NCOA3Q9Y6Q9 1424 aa16.42■□□□□ 0.22
SHMT2-229ENST00000557348 STRCQ7RTU9 1775 aa16.42■□□□□ 0.22
SHMT2-229ENST00000557348 NUTM2FA1L443 756 aa16.42■□□□□ 0.22
SHMT2-229ENST00000557348 PPM1GO15355 546 aaPredicted RBP16.42■□□□□ 0.22
SHMT2-229ENST00000557348 CALD1Q05682 793 aaKnown RBP16.42■□□□□ 0.22
SHMT2-229ENST00000557348 EMILIN1Q9Y6C2 1016 aa16.42■□□□□ 0.22
SHMT2-229ENST00000557348 IL13P35225 146 aa16.41■□□□□ 0.22
SHMT2-229ENST00000557348 TMPOP42166 694 aaKnown RBP16.41■□□□□ 0.22
SHMT2-229ENST00000557348 RSPH6AQ9H0K4 717 aa16.4■□□□□ 0.22
SHMT2-229ENST00000557348 LMOD3Q0VAK6 560 aa16.4■□□□□ 0.22
SHMT2-229ENST00000557348 PMFBP1Q8TBY8 1022 aa16.4■□□□□ 0.22
SHMT2-229ENST00000557348 PHF8Q9UPP1 1060 aa16.4■□□□□ 0.22
SHMT2-229ENST00000557348 NEUROD2Q15784 382 aa16.39■□□□□ 0.21
SHMT2-229ENST00000557348 CCDC136Q96JN2 1154 aa16.39■□□□□ 0.21
SHMT2-229ENST00000557348 ZRANB1Q9UGI0 708 aa16.38■□□□□ 0.21
SHMT2-229ENST00000557348 SBNO1A3KN83 1393 aa16.38■□□□□ 0.21
SHMT2-229ENST00000557348 FLT4P35916 1363 aa16.38■□□□□ 0.21
SHMT2-229ENST00000557348 RRP7AQ9Y3A4 280 aaKnown RBP16.37■□□□□ 0.21
SHMT2-229ENST00000557348 DCCP43146 1447 aa16.37■□□□□ 0.21
SHMT2-229ENST00000557348 PRKAR2BP31323 418 aa16.37■□□□□ 0.21
SHMT2-229ENST00000557348 RRS1Q15050 365 aaKnown RBP16.37■□□□□ 0.21
SHMT2-229ENST00000557348 C14orf37Q86TY3 774 aa16.37■□□□□ 0.21
SHMT2-229ENST00000557348 SPINK5Q9NQ38 1064 aaPredicted RBP16.37■□□□□ 0.21
SHMT2-229ENST00000557348 DMRT2Q9Y5R5 561 aa16.37■□□□□ 0.21
SHMT2-229ENST00000557348 RIPK4P57078 832 aa16.36■□□□□ 0.21
SHMT2-229ENST00000557348 PIK3C2AO00443 1686 aa16.36■□□□□ 0.21
SHMT2-229ENST00000557348 NFE2L2Q16236 605 aa16.35■□□□□ 0.21
SHMT2-229ENST00000557348 RGPD8O14715 1765 aaPredicted RBP16.35■□□□□ 0.21
SHMT2-229ENST00000557348 RTL1A6NKG5 1358 aa16.35■□□□□ 0.21
SHMT2-229ENST00000557348 PROSER2Q86WR7 435 aaPredicted RBP16.34■□□□□ 0.21
SHMT2-229ENST00000557348 ARHGEF10O15013 1369 aa16.34■□□□□ 0.21
SHMT2-229ENST00000557348 C19orf44Q9H6X5 657 aa16.34■□□□□ 0.21
SHMT2-229ENST00000557348 KIF1AQ12756 1690 aa16.33■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms