RNA–Protein interactions for RNA: ENST00000556992.1

SRP54-212, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-212ENST00000556992 ZMYND10O75800 440 aa8.21□□□□□ -1.1
SRP54-212ENST00000556992 CSPP1Q1MSJ5 1256 aa8.21□□□□□ -1.1
SRP54-212ENST00000556992 ZC3H15Q8WU90 426 aaKnown RBP8.21□□□□□ -1.1
SRP54-212ENST00000556992 MAP10Q9P2G4 905 aa8.21□□□□□ -1.1
SRP54-212ENST00000556992 ERBB4Q15303 1308 aa8.21□□□□□ -1.1
SRP54-212ENST00000556992 AMHR2Q16671 573 aa8.2□□□□□ -1.1
SRP54-212ENST00000556992 CABLES1Q8TDN4 633 aa8.2□□□□□ -1.1
SRP54-212ENST00000556992 SLC16A10Q8TF71 515 aa8.2□□□□□ -1.1
SRP54-212ENST00000556992 FOXJ1Q92949 421 aa8.2□□□□□ -1.1
SRP54-212ENST00000556992 PURBQ96QR8 312 aaKnown RBP8.2□□□□□ -1.1
SRP54-212ENST00000556992 WDR4P57081 412 aaKnown RBP8.19□□□□□ -1.1
SRP54-212ENST00000556992 ARID5BQ14865 1188 aa8.19□□□□□ -1.1
SRP54-212ENST00000556992 RSBN1LQ6PCB5 846 aaPredicted RBP8.19□□□□□ -1.1
SRP54-212ENST00000556992 PARP9Q8IXQ6 854 aa8.19□□□□□ -1.1
SRP54-212ENST00000556992 TIMP2P16035 220 aa8.18□□□□□ -1.1
SRP54-212ENST00000556992 LORP23490 312 aaPredicted RBP8.18□□□□□ -1.1
SRP54-212ENST00000556992 HRCP23327 699 aa8.17□□□□□ -1.1
SRP54-212ENST00000556992 VARSP26640 1264 aaKnown RBP8.17□□□□□ -1.1
SRP54-212ENST00000556992 MRPL14Q6P1L8 145 aaKnown RBP8.17□□□□□ -1.1
SRP54-212ENST00000556992 H3BM21 787 aa8.16□□□□□ -1.1
SRP54-212ENST00000556992 PER1O15534 1290 aaPredicted RBP8.16□□□□□ -1.1
SRP54-212ENST00000556992 ABCC9O60706 1549 aa8.16□□□□□ -1.1
SRP54-212ENST00000556992 LYPD8Q6UX82 237 aa8.16□□□□□ -1.1
SRP54-212ENST00000556992 TSC1Q92574 1164 aa8.16□□□□□ -1.1
SRP54-212ENST00000556992 ZFAND3Q9H8U3 227 aa8.16□□□□□ -1.1
SRP54-212ENST00000556992 PLEKHG3A1L390 1219 aa8.15□□□□□ -1.1
SRP54-212ENST00000556992 SPDYE5A6NIY4 337 aa8.15□□□□□ -1.1
SRP54-212ENST00000556992 ADH1CP00326 375 aa8.15□□□□□ -1.1
SRP54-212ENST00000556992 C4orf48Q5BLP8 95 aa8.15□□□□□ -1.1
SRP54-212ENST00000556992 DESI1Q6ICB0 168 aa8.15□□□□□ -1.1
SRP54-212ENST00000556992 IRF7Q92985 503 aa8.15□□□□□ -1.1
SRP54-212ENST00000556992 TRIM66O15016 1216 aa8.14□□□□□ -1.11
SRP54-212ENST00000556992 F12P00748 615 aaPredicted RBP8.14□□□□□ -1.11
SRP54-212ENST00000556992 NR3C2P08235 984 aa8.14□□□□□ -1.11
SRP54-212ENST00000556992 C6orf118Q5T5N4 469 aa8.14□□□□□ -1.11
SRP54-212ENST00000556992 SPTLC1O15269 473 aa8.13□□□□□ -1.11
SRP54-212ENST00000556992 ZIC2O95409 532 aaPredicted RBP8.13□□□□□ -1.11
SRP54-212ENST00000556992 AGERQ15109 404 aa8.13□□□□□ -1.11
SRP54-212ENST00000556992 RIC3Q7Z5B4 369 aa8.13□□□□□ -1.11
SRP54-212ENST00000556992 ZSCAN1Q8NBB4 408 aa8.13□□□□□ -1.11
SRP54-212ENST00000556992 FAM174AQ8TBP5 190 aa8.13□□□□□ -1.11
SRP54-212ENST00000556992 ITPKCQ96DU7 683 aa8.13□□□□□ -1.11
SRP54-212ENST00000556992 KLF16Q9BXK1 252 aaPredicted RBP8.13□□□□□ -1.11
SRP54-212ENST00000556992 ZBTB3Q9H5J0 574 aa8.13□□□□□ -1.11
SRP54-212ENST00000556992 CCDC180Q9P1Z9 1646 aa8.12□□□□□ -1.11
SRP54-212ENST00000556992 SCARF1Q14162 830 aa8.12□□□□□ -1.11
SRP54-212ENST00000556992 LIMD1Q9UGP4 676 aa8.12□□□□□ -1.11
SRP54-212ENST00000556992 QPCTQ16769 361 aa8.11□□□□□ -1.11
SRP54-212ENST00000556992 MPNDQ8N594 471 aa8.1□□□□□ -1.11
SRP54-212ENST00000556992 NPAS3Q8IXF0 933 aa8.09□□□□□ -1.11
SRP54-212ENST00000556992 CDK15Q96Q40 435 aa8.09□□□□□ -1.11
SRP54-212ENST00000556992 GJA5P36382 358 aa8.08□□□□□ -1.12
SRP54-212ENST00000556992 GRM5P41594 1212 aa8.08□□□□□ -1.12
SRP54-212ENST00000556992 NUTM2BA6NNL0 878 aaPredicted RBP8.07□□□□□ -1.12
SRP54-212ENST00000556992 NUTM2EB1AL46 878 aaPredicted RBP8.07□□□□□ -1.12
SRP54-212ENST00000556992 NUTM2DQ5VT03 806 aaPredicted RBP8.07□□□□□ -1.12
SRP54-212ENST00000556992 MYSM1Q5VVJ2 828 aa8.07□□□□□ -1.12
SRP54-212ENST00000556992 NUTM2AQ8IVF1 878 aaPredicted RBP8.07□□□□□ -1.12
SRP54-212ENST00000556992 MAN1A2O60476 641 aa8.06□□□□□ -1.12
SRP54-212ENST00000556992 BMP2P12643 396 aa8.06□□□□□ -1.12
SRP54-212ENST00000556992 FSHRP23945 695 aa8.06□□□□□ -1.12
SRP54-212ENST00000556992 DIXDC1Q155Q3 683 aa8.06□□□□□ -1.12
SRP54-212ENST00000556992 RTL5Q5HYW3 569 aaPredicted RBP8.06□□□□□ -1.12
SRP54-212ENST00000556992 MAGEB6P1A0A0J9YX57 407 aa8.05□□□□□ -1.12
SRP54-212ENST00000556992 FAM181BA6NEQ2 426 aa8.05□□□□□ -1.12
SRP54-212ENST00000556992 PRPF38BQ5VTL8 546 aaKnown RBP8.05□□□□□ -1.12
SRP54-212ENST00000556992 BPHLQ86WA6 291 aaPredicted RBP8.05□□□□□ -1.12
SRP54-212ENST00000556992 AK7Q96M32 723 aa8.05□□□□□ -1.12
SRP54-212ENST00000556992 CARD14Q9BXL6 1004 aa8.05□□□□□ -1.12
SRP54-212ENST00000556992 PDE4DQ08499 809 aa8.04□□□□□ -1.12
SRP54-212ENST00000556992 NR5A1Q13285 461 aa8.04□□□□□ -1.12
SRP54-212ENST00000556992 LINC00528Q8N1L1 170 aa8.04□□□□□ -1.12
SRP54-212ENST00000556992 DNMT3LQ9UJW3 386 aa8.03□□□□□ -1.12
SRP54-212ENST00000556992 LILRB3O75022 631 aa8.02□□□□□ -1.13
SRP54-212ENST00000556992 PPFIA3O75145 1194 aa8.02□□□□□ -1.13
SRP54-212ENST00000556992 SH3RF1Q7Z6J0 888 aa8.02□□□□□ -1.13
SRP54-212ENST00000556992 MEIOBQ8N635 442 aa8.02□□□□□ -1.13
SRP54-212ENST00000556992 VASH1Q7L8A9 365 aaPredicted RBP8.01□□□□□ -1.13
SRP54-212ENST00000556992 C1QTNF2Q9BXJ5 285 aa8.01□□□□□ -1.13
SRP54-212ENST00000556992 SLC24A3Q9HC58 644 aa8.01□□□□□ -1.13
SRP54-212ENST00000556992 POLR3EQ9NVU0 708 aa8.01□□□□□ -1.13
SRP54-212ENST00000556992 VSIG8P0DPA2 414 aa8□□□□□ -1.13
SRP54-212ENST00000556992 SH3BP5LQ7L8J4 393 aa8□□□□□ -1.13
SRP54-212ENST00000556992 SOS2Q07890 1332 aaPredicted RBP8□□□□□ -1.13
SRP54-212ENST00000556992 FIGNL2A6NMB9 653 aa7.99□□□□□ -1.13
SRP54-212ENST00000556992 UPP2O95045 317 aa7.99□□□□□ -1.13
SRP54-212ENST00000556992 CBLBQ13191 982 aa7.99□□□□□ -1.13
SRP54-212ENST00000556992 CLK2P49760 499 aaKnown RBP7.98□□□□□ -1.13
SRP54-212ENST00000556992 CTDSPL2Q05D32 466 aa7.98□□□□□ -1.13
SRP54-212ENST00000556992 FBXO31Q5XUX0 539 aaPredicted RBP7.98□□□□□ -1.13
SRP54-212ENST00000556992 GPR161Q8N6U8 529 aaKnown RBP7.98□□□□□ -1.13
SRP54-212ENST00000556992 HELBQ8NG08 1087 aaPredicted RBP7.98□□□□□ -1.13
SRP54-212ENST00000556992 ZCCHC6Q5VYS8 1495 aaKnown RBP7.98□□□□□ -1.13
SRP54-212ENST00000556992 ERFEQ4G0M1 354 aa7.97□□□□□ -1.13
SRP54-212ENST00000556992 NBPF14Q5TI25 921 aa7.97□□□□□ -1.13
SRP54-212ENST00000556992 CCDC116Q8IYX3 515 aa7.97□□□□□ -1.13
SRP54-212ENST00000556992 KRT76Q01546 638 aa7.96□□□□□ -1.14
SRP54-212ENST00000556992 ARMC2Q8NEN0 867 aa7.96□□□□□ -1.14
SRP54-212ENST00000556992 LRRN4Q8WUT4 740 aa7.96□□□□□ -1.14
SRP54-212ENST00000556992 PPP1R26Q5T8A7 1209 aaPredicted RBP7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms