RNA–Protein interactions for RNA: ENST00000556929.5

TMEM260-213, Transcript of transmembrane protein 260, humanhuman

TSL 4

Gene TMEM260, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-213ENST00000556929 CD163L1Q9NR16 1453 aa13.37□□□□□ -0.27
TMEM260-213ENST00000556929 A0A1W2PP64 1363 aa13.37□□□□□ -0.27
TMEM260-213ENST00000556929 KTN1Q86UP2 1357 aaKnown RBP13.37□□□□□ -0.27
TMEM260-213ENST00000556929 SAMD1Q6SPF0 538 aaPredicted RBP13.37□□□□□ -0.27
TMEM260-213ENST00000556929 BRINP3Q76B58 766 aa13.37□□□□□ -0.27
TMEM260-213ENST00000556929 DSG3P32926 999 aa13.36□□□□□ -0.27
TMEM260-213ENST00000556929 PSME1Q06323 249 aa13.36□□□□□ -0.27
TMEM260-213ENST00000556929 KIF20BQ96Q89 1820 aa13.36□□□□□ -0.27
TMEM260-213ENST00000556929 NPHP3Q7Z494 1330 aa13.36□□□□□ -0.27
TMEM260-213ENST00000556929 BRD4O60885 1362 aaPredicted RBP13.35□□□□□ -0.27
TMEM260-213ENST00000556929 MYCNP04198 464 aaPredicted RBP13.35□□□□□ -0.27
TMEM260-213ENST00000556929 NRKQ7Z2Y5 1582 aa13.35□□□□□ -0.27
TMEM260-213ENST00000556929 USP6P35125 1406 aa13.34□□□□□ -0.27
TMEM260-213ENST00000556929 EDC4Q6P2E9 1401 aaKnown RBP13.34□□□□□ -0.27
TMEM260-213ENST00000556929 FOXO3O43524 673 aa13.34□□□□□ -0.27
TMEM260-213ENST00000556929 PIP4K2BP78356 416 aa13.34□□□□□ -0.27
TMEM260-213ENST00000556929 KNSTRNQ9Y448 316 aa13.34□□□□□ -0.27
TMEM260-213ENST00000556929 PHLPP1O60346 1717 aa13.33□□□□□ -0.27
TMEM260-213ENST00000556929 NSD3Q9BZ95 1437 aa13.33□□□□□ -0.28
TMEM260-213ENST00000556929 KRT28Q7Z3Y7 464 aa13.33□□□□□ -0.28
TMEM260-213ENST00000556929 TRPM3Q9HCF6 1732 aaPredicted RBP13.33□□□□□ -0.28
TMEM260-213ENST00000556929 AHDC1Q5TGY3 1603 aaPredicted RBP13.32□□□□□ -0.28
TMEM260-213ENST00000556929 FOXD4L1Q9NU39 408 aa13.32□□□□□ -0.28
TMEM260-213ENST00000556929 ANKRD26Q9UPS8 1709 aa13.32□□□□□ -0.28
TMEM260-213ENST00000556929 PAK3O75914 559 aaPredicted RBP13.31□□□□□ -0.28
TMEM260-213ENST00000556929 CARD14Q9BXL6 1004 aa13.31□□□□□ -0.28
TMEM260-213ENST00000556929 TTC21AQ8NDW8 1320 aa13.31□□□□□ -0.28
TMEM260-213ENST00000556929 PER1O15534 1290 aaPredicted RBP13.3□□□□□ -0.28
TMEM260-213ENST00000556929 CGNL1Q0VF96 1302 aa13.3□□□□□ -0.28
TMEM260-213ENST00000556929 TTC21BQ7Z4L5 1316 aa13.3□□□□□ -0.28
TMEM260-213ENST00000556929 ALS2Q96Q42 1657 aa13.3□□□□□ -0.28
TMEM260-213ENST00000556929 SSH2Q76I76 1423 aa13.3□□□□□ -0.28
TMEM260-213ENST00000556929 PXDNQ92626 1479 aa13.29□□□□□ -0.28
TMEM260-213ENST00000556929 XPCQ01831 940 aaPredicted RBP13.29□□□□□ -0.28
TMEM260-213ENST00000556929 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.29□□□□□ -0.28
TMEM260-213ENST00000556929 DDX17Q92841 729 aaKnown RBP13.29□□□□□ -0.28
TMEM260-213ENST00000556929 ZNF219Q9P2Y4 722 aaPredicted RBP13.29□□□□□ -0.28
TMEM260-213ENST00000556929 SOS2Q07890 1332 aaPredicted RBP13.29□□□□□ -0.28
TMEM260-213ENST00000556929 SBNO1A3KN83 1393 aa13.29□□□□□ -0.28
TMEM260-213ENST00000556929 PIK3C2AO00443 1686 aa13.28□□□□□ -0.28
TMEM260-213ENST00000556929 NSD2O96028 1365 aa13.28□□□□□ -0.28
TMEM260-213ENST00000556929 USP54Q70EL1 1684 aa13.28□□□□□ -0.28
TMEM260-213ENST00000556929 ABTB2Q8N961 1025 aa13.27□□□□□ -0.29
TMEM260-213ENST00000556929 NPC1L1Q9UHC9 1359 aa13.27□□□□□ -0.29
TMEM260-213ENST00000556929 TNS3Q68CZ2 1445 aa13.27□□□□□ -0.29
TMEM260-213ENST00000556929 COL16A1Q07092 1604 aaPredicted RBP13.26□□□□□ -0.29
TMEM260-213ENST00000556929 DIEXFQ68CQ4 756 aaKnown RBP13.26□□□□□ -0.29
TMEM260-213ENST00000556929 LMOD2Q6P5Q4 547 aa13.26□□□□□ -0.29
TMEM260-213ENST00000556929 LRRC59Q96AG4 307 aaKnown RBP13.26□□□□□ -0.29
TMEM260-213ENST00000556929 ARHGEF10O15013 1369 aa13.25□□□□□ -0.29
TMEM260-213ENST00000556929 SPATA31A3Q5VYP0 1347 aa13.25□□□□□ -0.29
TMEM260-213ENST00000556929 FYB1O15117 783 aa13.25□□□□□ -0.29
TMEM260-213ENST00000556929 AMER1Q5JTC6 1135 aaPredicted RBP13.25□□□□□ -0.29
TMEM260-213ENST00000556929 NLRP13Q86W25 1043 aa13.25□□□□□ -0.29
TMEM260-213ENST00000556929 NME9Q86XW9 330 aa13.25□□□□□ -0.29
TMEM260-213ENST00000556929 COG3Q96JB2 828 aa13.25□□□□□ -0.29
TMEM260-213ENST00000556929 USP31Q70CQ4 1352 aa13.24□□□□□ -0.29
TMEM260-213ENST00000556929 ANP32CO43423 234 aa13.24□□□□□ -0.29
TMEM260-213ENST00000556929 NLRP6P59044 892 aa13.24□□□□□ -0.29
TMEM260-213ENST00000556929 CC2D1BQ5T0F9 858 aaKnown RBP13.24□□□□□ -0.29
TMEM260-213ENST00000556929 GGNBP2Q9H3C7 697 aa13.24□□□□□ -0.29
TMEM260-213ENST00000556929 MARF1Q9Y4F3 1742 aaKnown RBP13.24□□□□□ -0.29
TMEM260-213ENST00000556929 CNGB1Q14028 1251 aaPredicted RBP13.23□□□□□ -0.29
TMEM260-213ENST00000556929 MORC1Q86VD1 984 aa13.23□□□□□ -0.29
TMEM260-213ENST00000556929 MAP2P11137 1827 aaKnown RBP13.23□□□□□ -0.29
TMEM260-213ENST00000556929 SHPRHQ149N8 1683 aa13.22□□□□□ -0.29
TMEM260-213ENST00000556929 COL22A1Q8NFW1 1626 aaPredicted RBP13.22□□□□□ -0.29
TMEM260-213ENST00000556929 PHRF1Q9P1Y6 1649 aaKnown RBP13.22□□□□□ -0.29
TMEM260-213ENST00000556929 CRYBG1Q9Y4K1 1723 aa13.22□□□□□ -0.29
TMEM260-213ENST00000556929 OVOS2A0A0J9YW53 1432 aa13.22□□□□□ -0.29
TMEM260-213ENST00000556929 OVOS2Q6IE36 1432 aa13.22□□□□□ -0.29
TMEM260-213ENST00000556929 ZBTB22O15209 634 aa13.21□□□□□ -0.29
TMEM260-213ENST00000556929 RALBP1Q15311 655 aa13.21□□□□□ -0.29
TMEM260-213ENST00000556929 NUTM2GQ5VZR2 741 aa13.21□□□□□ -0.29
TMEM260-213ENST00000556929 FBXO41Q8TF61 875 aa13.21□□□□□ -0.29
TMEM260-213ENST00000556929 MED1Q15648 1581 aaPredicted RBP13.2□□□□□ -0.3
TMEM260-213ENST00000556929 ABCA3Q99758 1704 aa13.2□□□□□ -0.3
TMEM260-213ENST00000556929 KCNH5Q8NCM2 988 aa13.2□□□□□ -0.3
TMEM260-213ENST00000556929 ZRANB1Q9UGI0 708 aa13.2□□□□□ -0.3
TMEM260-213ENST00000556929 ABCB7O75027 752 aa13.19□□□□□ -0.3
TMEM260-213ENST00000556929 PRKRIP1Q9H875 184 aaPredicted RBP13.19□□□□□ -0.3
TMEM260-213ENST00000556929 LTN1O94822 1766 aa13.19□□□□□ -0.3
TMEM260-213ENST00000556929 PARD3Q8TEW0 1356 aa13.19□□□□□ -0.3
TMEM260-213ENST00000556929 SLIT3O75094 1523 aa13.18□□□□□ -0.3
TMEM260-213ENST00000556929 HSPA1LP34931 641 aa13.18□□□□□ -0.3
TMEM260-213ENST00000556929 HAP1P54257 671 aaPredicted RBP13.18□□□□□ -0.3
TMEM260-213ENST00000556929 PNPLA6Q8IY17 1366 aa13.18□□□□□ -0.3
TMEM260-213ENST00000556929 JCADQ9P266 1359 aa13.18□□□□□ -0.3
TMEM260-213ENST00000556929 USP19O94966 1318 aa13.17□□□□□ -0.3
TMEM260-213ENST00000556929 PLEKHG5O94827 1062 aa13.17□□□□□ -0.3
TMEM260-213ENST00000556929 TNNT2P45379 298 aaPredicted RBP13.16□□□□□ -0.3
TMEM260-213ENST00000556929 AATKQ6ZMQ8 1374 aa13.16□□□□□ -0.3
TMEM260-213ENST00000556929 GCP02774 474 aa13.15□□□□□ -0.3
TMEM260-213ENST00000556929 MYBBP1AQ9BQG0 1328 aaKnown RBP13.14□□□□□ -0.31
TMEM260-213ENST00000556929 NFAT5O94916 1531 aa13.14□□□□□ -0.31
TMEM260-213ENST00000556929 SOX12O15370 315 aa13.14□□□□□ -0.31
TMEM260-213ENST00000556929 CABLES1Q8TDN4 633 aa13.14□□□□□ -0.31
TMEM260-213ENST00000556929 PPP2R1AP30153 589 aa13.13□□□□□ -0.31
TMEM260-213ENST00000556929 SPATA31A6Q5VVP1 1343 aa13.13□□□□□ -0.31
TMEM260-213ENST00000556929 KIF24Q5T7B8 1368 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms