RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 SPATA31A3Q5VYP0 1347 aa19.32■□□□□ 0.68
VIPAS39-208ENST00000556412 TTC21BQ7Z4L5 1316 aa19.32■□□□□ 0.68
VIPAS39-208ENST00000556412 SBNO1A3KN83 1393 aa19.32■□□□□ 0.68
VIPAS39-208ENST00000556412 PHLPP1O60346 1717 aa19.32■□□□□ 0.68
VIPAS39-208ENST00000556412 DDX10Q13206 875 aaKnown RBP19.32■□□□□ 0.68
VIPAS39-208ENST00000556412 ABTB2Q8N961 1025 aa19.32■□□□□ 0.68
VIPAS39-208ENST00000556412 NSD3Q9BZ95 1437 aa19.32■□□□□ 0.68
VIPAS39-208ENST00000556412 TNS3Q68CZ2 1445 aa19.31■□□□□ 0.68
VIPAS39-208ENST00000556412 EDC4Q6P2E9 1401 aaKnown RBP19.31■□□□□ 0.68
VIPAS39-208ENST00000556412 COL16A1Q07092 1604 aaPredicted RBP19.29■□□□□ 0.68
VIPAS39-208ENST00000556412 ILDR1Q86SU0 546 aaPredicted RBP19.29■□□□□ 0.68
VIPAS39-208ENST00000556412 NME9Q86XW9 330 aa19.29■□□□□ 0.68
VIPAS39-208ENST00000556412 BRD4O60885 1362 aaPredicted RBP19.29■□□□□ 0.68
VIPAS39-208ENST00000556412 SSH2Q76I76 1423 aa19.28■□□□□ 0.68
VIPAS39-208ENST00000556412 KNSTRNQ9Y448 316 aa19.28■□□□□ 0.68
VIPAS39-208ENST00000556412 TTC21AQ8NDW8 1320 aa19.28■□□□□ 0.68
VIPAS39-208ENST00000556412 CNGB1Q14028 1251 aaPredicted RBP19.28■□□□□ 0.68
VIPAS39-208ENST00000556412 ARHGEF10O15013 1369 aa19.27■□□□□ 0.68
VIPAS39-208ENST00000556412 NLRP6P59044 892 aa19.27■□□□□ 0.68
VIPAS39-208ENST00000556412 JCADQ9P266 1359 aa19.27■□□□□ 0.67
VIPAS39-208ENST00000556412 ZRANB1Q9UGI0 708 aa19.26■□□□□ 0.67
VIPAS39-208ENST00000556412 PNPLA6Q8IY17 1366 aa19.26■□□□□ 0.67
VIPAS39-208ENST00000556412 HAP1P54257 671 aaPredicted RBP19.25■□□□□ 0.67
VIPAS39-208ENST00000556412 CGNL1Q0VF96 1302 aa19.25■□□□□ 0.67
VIPAS39-208ENST00000556412 CABLES1Q8TDN4 633 aa19.25■□□□□ 0.67
VIPAS39-208ENST00000556412 GGNBP2Q9H3C7 697 aa19.25■□□□□ 0.67
VIPAS39-208ENST00000556412 NUTM2BA6NNL0 878 aaPredicted RBP19.24■□□□□ 0.67
VIPAS39-208ENST00000556412 NUTM2EB1AL46 878 aaPredicted RBP19.24■□□□□ 0.67
VIPAS39-208ENST00000556412 AKAP12Q02952 1782 aa19.24■□□□□ 0.67
VIPAS39-208ENST00000556412 NUTM2AQ8IVF1 878 aaPredicted RBP19.24■□□□□ 0.67
VIPAS39-208ENST00000556412 TRPM3Q9HCF6 1732 aaPredicted RBP19.24■□□□□ 0.67
VIPAS39-208ENST00000556412 SOX12O15370 315 aa19.23■□□□□ 0.67
VIPAS39-208ENST00000556412 NLRP13Q86W25 1043 aa19.23■□□□□ 0.67
VIPAS39-208ENST00000556412 MON2Q7Z3U7 1717 aa19.23■□□□□ 0.67
VIPAS39-208ENST00000556412 NRKQ7Z2Y5 1582 aa19.23■□□□□ 0.67
VIPAS39-208ENST00000556412 FYB1O15117 783 aa19.23■□□□□ 0.67
VIPAS39-208ENST00000556412 COG3Q96JB2 828 aa19.22■□□□□ 0.67
VIPAS39-208ENST00000556412 PER1O15534 1290 aaPredicted RBP19.21■□□□□ 0.67
VIPAS39-208ENST00000556412 CC2D1BQ5T0F9 858 aaKnown RBP19.2■□□□□ 0.66
VIPAS39-208ENST00000556412 AMER1Q5JTC6 1135 aaPredicted RBP19.18■□□□□ 0.66
VIPAS39-208ENST00000556412 PIK3C2AO00443 1686 aa19.18■□□□□ 0.66
VIPAS39-208ENST00000556412 ALS2Q96Q42 1657 aa19.18■□□□□ 0.66
VIPAS39-208ENST00000556412 USP31Q70CQ4 1352 aa19.18■□□□□ 0.66
VIPAS39-208ENST00000556412 SPATA31A6Q5VVP1 1343 aa19.17■□□□□ 0.66
VIPAS39-208ENST00000556412 ZBTB7CA1YPR0 619 aa19.17■□□□□ 0.66
VIPAS39-208ENST00000556412 ADAMTS2O95450 1211 aa19.17■□□□□ 0.66
VIPAS39-208ENST00000556412 USP19O94966 1318 aa19.17■□□□□ 0.66
VIPAS39-208ENST00000556412 TNNT2P45379 298 aaPredicted RBP19.16■□□□□ 0.66
VIPAS39-208ENST00000556412 GCP02774 474 aa19.16■□□□□ 0.66
VIPAS39-208ENST00000556412 OVOS2A0A0J9YW53 1432 aa19.15■□□□□ 0.66
VIPAS39-208ENST00000556412 OVOS2Q6IE36 1432 aa19.15■□□□□ 0.66
VIPAS39-208ENST00000556412 ZC3H6P61129 1189 aaKnown RBP19.15■□□□□ 0.66
VIPAS39-208ENST00000556412 MORC1Q86VD1 984 aa19.15■□□□□ 0.66
VIPAS39-208ENST00000556412 NSD2O96028 1365 aa19.14■□□□□ 0.66
VIPAS39-208ENST00000556412 MEX3CQ5U5Q3 659 aaKnown RBP19.14■□□□□ 0.65
VIPAS39-208ENST00000556412 KCNH5Q8NCM2 988 aa19.14■□□□□ 0.65
VIPAS39-208ENST00000556412 MED1Q15648 1581 aaPredicted RBP19.14■□□□□ 0.65
VIPAS39-208ENST00000556412 SHPRHQ149N8 1683 aa19.13■□□□□ 0.65
VIPAS39-208ENST00000556412 FBLN1P23142 703 aa19.12■□□□□ 0.65
VIPAS39-208ENST00000556412 COL22A1Q8NFW1 1626 aaPredicted RBP19.11■□□□□ 0.65
VIPAS39-208ENST00000556412 LRP6O75581 1613 aa19.1■□□□□ 0.65
VIPAS39-208ENST00000556412 PRDM11Q9NQV5 511 aa19.1■□□□□ 0.65
VIPAS39-208ENST00000556412 KIAA0232Q92628 1395 aa19.1■□□□□ 0.65
VIPAS39-208ENST00000556412 SLIT3O75094 1523 aa19.09■□□□□ 0.65
VIPAS39-208ENST00000556412 C8orf37Q96NL8 207 aa19.09■□□□□ 0.65
VIPAS39-208ENST00000556412 RRS1Q15050 365 aaKnown RBP19.09■□□□□ 0.65
VIPAS39-208ENST00000556412 CHRNA2Q15822 529 aa19.09■□□□□ 0.65
VIPAS39-208ENST00000556412 NPC1L1Q9UHC9 1359 aa19.08■□□□□ 0.65
VIPAS39-208ENST00000556412 KIF20BQ96Q89 1820 aa19.07■□□□□ 0.64
VIPAS39-208ENST00000556412 PPM1GO15355 546 aaPredicted RBP19.07■□□□□ 0.64
VIPAS39-208ENST00000556412 PHRF1Q9P1Y6 1649 aaKnown RBP19.06■□□□□ 0.64
VIPAS39-208ENST00000556412 NGLY1Q96IV0 654 aa19.06■□□□□ 0.64
VIPAS39-208ENST00000556412 FAM83GA6ND36 823 aa19.05■□□□□ 0.64
VIPAS39-208ENST00000556412 ARHGEF25Q86VW2 580 aa19.05■□□□□ 0.64
VIPAS39-208ENST00000556412 NFAT5O94916 1531 aa19.05■□□□□ 0.64
VIPAS39-208ENST00000556412 MAP3K19Q56UN5 1328 aa19.05■□□□□ 0.64
VIPAS39-208ENST00000556412 AMPHP49418 695 aa19.04■□□□□ 0.64
VIPAS39-208ENST00000556412 CPDO75976 1380 aa19.04■□□□□ 0.64
VIPAS39-208ENST00000556412 EMILIN1Q9Y6C2 1016 aa19.04■□□□□ 0.64
VIPAS39-208ENST00000556412 ABCA3Q99758 1704 aa19.03■□□□□ 0.64
VIPAS39-208ENST00000556412 MARF1Q9Y4F3 1742 aaKnown RBP19.03■□□□□ 0.64
VIPAS39-208ENST00000556412 CRYBG1Q9Y4K1 1723 aa19.02■□□□□ 0.64
VIPAS39-208ENST00000556412 USP54Q70EL1 1684 aa19.02■□□□□ 0.64
VIPAS39-208ENST00000556412 POLKQ9UBT6 870 aa19.02■□□□□ 0.63
VIPAS39-208ENST00000556412 AATKQ6ZMQ8 1374 aa19.01■□□□□ 0.63
VIPAS39-208ENST00000556412 BTG4Q9NY30 223 aa19.01■□□□□ 0.63
VIPAS39-208ENST00000556412 ANP32CO43423 234 aa19■□□□□ 0.63
VIPAS39-208ENST00000556412 PARD3Q8TEW0 1356 aa19■□□□□ 0.63
VIPAS39-208ENST00000556412 RALBP1Q15311 655 aa19■□□□□ 0.63
VIPAS39-208ENST00000556412 AFF2P51816 1311 aa18.99■□□□□ 0.63
VIPAS39-208ENST00000556412 PHF23Q9BUL5 403 aaPredicted RBP18.99■□□□□ 0.63
VIPAS39-208ENST00000556412 PRKRIP1Q9H875 184 aaPredicted RBP18.99■□□□□ 0.63
VIPAS39-208ENST00000556412 STRN4Q9NRL3 753 aa18.99■□□□□ 0.63
VIPAS39-208ENST00000556412 AXIN2Q9Y2T1 843 aa18.99■□□□□ 0.63
VIPAS39-208ENST00000556412 PPP2R1AP30153 589 aa18.98■□□□□ 0.63
VIPAS39-208ENST00000556412 HOXC9P31274 260 aa18.98■□□□□ 0.63
VIPAS39-208ENST00000556412 MTHFSP49914 203 aa18.98■□□□□ 0.63
VIPAS39-208ENST00000556412 DIEXFQ68CQ4 756 aaKnown RBP18.98■□□□□ 0.63
VIPAS39-208ENST00000556412 LTV1Q96GA3 475 aaPredicted RBP18.98■□□□□ 0.63
VIPAS39-208ENST00000556412 ANKRD26Q9UPS8 1709 aa18.98■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms