RNA–Protein interactions for RNA: ENST00000556339.5

ATXN3-240, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 525 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-240ENST00000556339 TLL2Q9Y6L7 1015 aa7.68□□□□□ -1.18
ATXN3-240ENST00000556339 TERTO14746 1132 aaKnown RBP7.67□□□□□ -1.18
ATXN3-240ENST00000556339 VARSP26640 1264 aaKnown RBP7.67□□□□□ -1.18
ATXN3-240ENST00000556339 CSPP1Q1MSJ5 1256 aa7.67□□□□□ -1.18
ATXN3-240ENST00000556339 LCE2AQ5TA79 106 aaPredicted RBP7.67□□□□□ -1.18
ATXN3-240ENST00000556339 RSBN1LQ6PCB5 846 aaPredicted RBP7.67□□□□□ -1.18
ATXN3-240ENST00000556339 INSM1Q01101 510 aaPredicted RBP7.66□□□□□ -1.18
ATXN3-240ENST00000556339 SLC16A10Q8TF71 515 aa7.66□□□□□ -1.18
ATXN3-240ENST00000556339 AK7Q96M32 723 aa7.66□□□□□ -1.18
ATXN3-240ENST00000556339 TRIM66O15016 1216 aa7.65□□□□□ -1.18
ATXN3-240ENST00000556339 GJA5P36382 358 aa7.65□□□□□ -1.18
ATXN3-240ENST00000556339 ARID5BQ14865 1188 aa7.65□□□□□ -1.18
ATXN3-240ENST00000556339 AGERQ15109 404 aa7.65□□□□□ -1.18
ATXN3-240ENST00000556339 BICRAQ9NZM4 1560 aa7.64□□□□□ -1.19
ATXN3-240ENST00000556339 NUTM2BA6NNL0 878 aaPredicted RBP7.64□□□□□ -1.19
ATXN3-240ENST00000556339 NUTM2EB1AL46 878 aaPredicted RBP7.64□□□□□ -1.19
ATXN3-240ENST00000556339 NNTQ13423 1086 aa7.64□□□□□ -1.19
ATXN3-240ENST00000556339 NUTM2DQ5VT03 806 aaPredicted RBP7.64□□□□□ -1.19
ATXN3-240ENST00000556339 RIC3Q7Z5B4 369 aa7.64□□□□□ -1.19
ATXN3-240ENST00000556339 NUTM2AQ8IVF1 878 aaPredicted RBP7.64□□□□□ -1.19
ATXN3-240ENST00000556339 FAM174AQ8TBP5 190 aa7.64□□□□□ -1.19
ATXN3-240ENST00000556339 PCDHB15Q9Y5E8 787 aa7.64□□□□□ -1.19
ATXN3-240ENST00000556339 ZCCHC6Q5VYS8 1495 aaKnown RBP7.63□□□□□ -1.19
ATXN3-240ENST00000556339 HRCP23327 699 aa7.63□□□□□ -1.19
ATXN3-240ENST00000556339 LYPD8Q6UX82 237 aa7.63□□□□□ -1.19
ATXN3-240ENST00000556339 MAP10Q9P2G4 905 aa7.63□□□□□ -1.19
ATXN3-240ENST00000556339 CFAP99D6REC4 459 aa7.62□□□□□ -1.19
ATXN3-240ENST00000556339 SPTLC1O15269 473 aa7.62□□□□□ -1.19
ATXN3-240ENST00000556339 SCARF1Q14162 830 aa7.62□□□□□ -1.19
ATXN3-240ENST00000556339 TRIM46Q7Z4K8 759 aa7.62□□□□□ -1.19
ATXN3-240ENST00000556339 CABLES1Q8TDN4 633 aa7.62□□□□□ -1.19
ATXN3-240ENST00000556339 WIPF1O43516 503 aa7.61□□□□□ -1.19
ATXN3-240ENST00000556339 WDR4P57081 412 aaKnown RBP7.61□□□□□ -1.19
ATXN3-240ENST00000556339 PRPF38BQ5VTL8 546 aaKnown RBP7.61□□□□□ -1.19
ATXN3-240ENST00000556339 NXF1Q9UBU9 619 aaKnown RBP7.61□□□□□ -1.19
ATXN3-240ENST00000556339 STK17AQ9UEE5 414 aa7.61□□□□□ -1.19
ATXN3-240ENST00000556339 SCRIBQ14160 1630 aa7.6□□□□□ -1.19
ATXN3-240ENST00000556339 ADH1CP00326 375 aa7.6□□□□□ -1.19
ATXN3-240ENST00000556339 ZFP42Q96MM3 310 aa7.6□□□□□ -1.19
ATXN3-240ENST00000556339 DCAF1Q9Y4B6 1507 aa7.6□□□□□ -1.19
ATXN3-240ENST00000556339 PDE4DQ08499 809 aa7.59□□□□□ -1.19
ATXN3-240ENST00000556339 HELBQ8NG08 1087 aaPredicted RBP7.59□□□□□ -1.19
ATXN3-240ENST00000556339 FOXJ1Q92949 421 aa7.59□□□□□ -1.19
ATXN3-240ENST00000556339 MRPL14Q6P1L8 145 aaKnown RBP7.58□□□□□ -1.2
ATXN3-240ENST00000556339 BPHLQ86WA6 291 aaPredicted RBP7.58□□□□□ -1.2
ATXN3-240ENST00000556339 MPNDQ8N594 471 aa7.58□□□□□ -1.2
ATXN3-240ENST00000556339 PURBQ96QR8 312 aaKnown RBP7.58□□□□□ -1.2
ATXN3-240ENST00000556339 VEGFBP49765 207 aa7.57□□□□□ -1.2
ATXN3-240ENST00000556339 MYSM1Q5VVJ2 828 aa7.57□□□□□ -1.2
ATXN3-240ENST00000556339 IRF7Q92985 503 aa7.57□□□□□ -1.2
ATXN3-240ENST00000556339 ATP1B4Q9UN42 357 aaPredicted RBP7.57□□□□□ -1.2
ATXN3-240ENST00000556339 FAM181BA6NEQ2 426 aa7.56□□□□□ -1.2
ATXN3-240ENST00000556339 PER1O15534 1290 aaPredicted RBP7.56□□□□□ -1.2
ATXN3-240ENST00000556339 ZIC2O95409 532 aaPredicted RBP7.56□□□□□ -1.2
ATXN3-240ENST00000556339 F12P00748 615 aaPredicted RBP7.56□□□□□ -1.2
ATXN3-240ENST00000556339 TIMP2P16035 220 aa7.56□□□□□ -1.2
ATXN3-240ENST00000556339 ARMC2Q8NEN0 867 aa7.56□□□□□ -1.2
ATXN3-240ENST00000556339 LIMD1Q9UGP4 676 aa7.56□□□□□ -1.2
ATXN3-240ENST00000556339 MAGEB6P1A0A0J9YX57 407 aa7.55□□□□□ -1.2
ATXN3-240ENST00000556339 UPP2O95045 317 aa7.55□□□□□ -1.2
ATXN3-240ENST00000556339 QPCTQ16769 361 aa7.55□□□□□ -1.2
ATXN3-240ENST00000556339 C6orf118Q5T5N4 469 aa7.55□□□□□ -1.2
ATXN3-240ENST00000556339 NBPF14Q5TI25 921 aa7.55□□□□□ -1.2
ATXN3-240ENST00000556339 NPAS3Q8IXF0 933 aa7.55□□□□□ -1.2
ATXN3-240ENST00000556339 SLC24A3Q9HC58 644 aa7.55□□□□□ -1.2
ATXN3-240ENST00000556339 CECR2Q9BXF3 1484 aa7.55□□□□□ -1.2
ATXN3-240ENST00000556339 CLK2P49760 499 aaKnown RBP7.54□□□□□ -1.2
ATXN3-240ENST00000556339 NR5A1Q13285 461 aa7.54□□□□□ -1.2
ATXN3-240ENST00000556339 MAN1A2O60476 641 aa7.53□□□□□ -1.2
ATXN3-240ENST00000556339 LCE2CQ5TA81 110 aa7.53□□□□□ -1.2
ATXN3-240ENST00000556339 CDK15Q96Q40 435 aa7.53□□□□□ -1.2
ATXN3-240ENST00000556339 CARD14Q9BXL6 1004 aa7.53□□□□□ -1.2
ATXN3-240ENST00000556339 RSPH6AQ9H0K4 717 aa7.53□□□□□ -1.2
ATXN3-240ENST00000556339 ZFAND3Q9H8U3 227 aa7.53□□□□□ -1.2
ATXN3-240ENST00000556339 CC2D2AQ9P2K1 1620 aa7.52□□□□□ -1.2
ATXN3-240ENST00000556339 SHROOM4Q9ULL8 1493 aa7.52□□□□□ -1.21
ATXN3-240ENST00000556339 BMP2P12643 396 aa7.52□□□□□ -1.21
ATXN3-240ENST00000556339 GMPRP36959 345 aa7.52□□□□□ -1.21
ATXN3-240ENST00000556339 VASH1Q7L8A9 365 aaPredicted RBP7.52□□□□□ -1.21
ATXN3-240ENST00000556339 ITPKCQ96DU7 683 aa7.52□□□□□ -1.21
ATXN3-240ENST00000556339 POLR3EQ9NVU0 708 aa7.52□□□□□ -1.21
ATXN3-240ENST00000556339 SOBPA7XYQ1 873 aa7.51□□□□□ -1.21
ATXN3-240ENST00000556339 H3BM21 787 aa7.51□□□□□ -1.21
ATXN3-240ENST00000556339 LILRB3O75022 631 aa7.51□□□□□ -1.21
ATXN3-240ENST00000556339 FSHRP23945 695 aa7.51□□□□□ -1.21
ATXN3-240ENST00000556339 TUSC1Q2TAM9 212 aa7.51□□□□□ -1.21
ATXN3-240ENST00000556339 C4orf48Q5BLP8 95 aa7.51□□□□□ -1.21
ATXN3-240ENST00000556339 NR3C2P08235 984 aa7.5□□□□□ -1.21
ATXN3-240ENST00000556339 RTL5Q5HYW3 569 aaPredicted RBP7.5□□□□□ -1.21
ATXN3-240ENST00000556339 ZSCAN1Q8NBB4 408 aa7.49□□□□□ -1.21
ATXN3-240ENST00000556339 EIF4G1Q04637 1599 aaKnown RBP7.49□□□□□ -1.21
ATXN3-240ENST00000556339 LINC00528Q8N1L1 170 aa7.48□□□□□ -1.21
ATXN3-240ENST00000556339 KLF16Q9BXK1 252 aaPredicted RBP7.48□□□□□ -1.21
ATXN3-240ENST00000556339 GRM5P41594 1212 aa7.47□□□□□ -1.21
ATXN3-240ENST00000556339 GPKOWQ92917 476 aaPredicted RBP eCLIP7.47□□□□□ -1.21
ATXN3-240ENST00000556339 ERBB4Q15303 1308 aa7.47□□□□□ -1.21
ATXN3-240ENST00000556339 SH3RF1Q7Z6J0 888 aa7.46□□□□□ -1.22
ATXN3-240ENST00000556339 CCDC116Q8IYX3 515 aa7.46□□□□□ -1.22
ATXN3-240ENST00000556339 MEIOBQ8N635 442 aa7.46□□□□□ -1.22
ATXN3-240ENST00000556339 MAP4K5Q9Y4K4 846 aa7.46□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms