RNA–Protein interactions for RNA: ENST00000556310.1

SLIRP-205, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-205ENST00000556310 SBNO2Q9Y2G9 1366 aa16.42■□□□□ 0.22
SLIRP-205ENST00000556310 CARD11Q9BXL7 1154 aa16.42■□□□□ 0.22
SLIRP-205ENST00000556310 POLR3AO14802 1390 aaPredicted RBP16.41■□□□□ 0.22
SLIRP-205ENST00000556310 CCDC61Q9Y6R9 512 aa16.41■□□□□ 0.22
SLIRP-205ENST00000556310 CRYBG1Q9Y4K1 1723 aa16.41■□□□□ 0.22
SLIRP-205ENST00000556310 SRPK2P78362 688 aaKnown RBP16.4■□□□□ 0.22
SLIRP-205ENST00000556310 ZNF772Q68DY9 489 aaPredicted RBP16.4■□□□□ 0.22
SLIRP-205ENST00000556310 POTEAQ6S8J7 498 aa16.4■□□□□ 0.22
SLIRP-205ENST00000556310 NGDNQ8NEJ9 315 aaKnown RBP16.4■□□□□ 0.22
SLIRP-205ENST00000556310 AFF2P51816 1311 aa16.4■□□□□ 0.22
SLIRP-205ENST00000556310 EVC2Q86UK5 1308 aa16.4■□□□□ 0.22
SLIRP-205ENST00000556310 PPIP5K1Q6PFW1 1433 aa16.39■□□□□ 0.21
SLIRP-205ENST00000556310 ADAMTS2O95450 1211 aa16.39■□□□□ 0.21
SLIRP-205ENST00000556310 C8orf37Q96NL8 207 aa16.39■□□□□ 0.21
SLIRP-205ENST00000556310 TIMELESSQ9UNS1 1208 aa16.39■□□□□ 0.21
SLIRP-205ENST00000556310 SOCS7O14512 581 aa16.38■□□□□ 0.21
SLIRP-205ENST00000556310 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.37■□□□□ 0.21
SLIRP-205ENST00000556310 PLEKHG3A1L390 1219 aa16.37■□□□□ 0.21
SLIRP-205ENST00000556310 CABP2Q9NPB3 220 aa16.37■□□□□ 0.21
SLIRP-205ENST00000556310 ACEP12821 1306 aa16.36■□□□□ 0.21
SLIRP-205ENST00000556310 AKAP12Q02952 1782 aa16.36■□□□□ 0.21
SLIRP-205ENST00000556310 PHRF1Q9P1Y6 1649 aaKnown RBP16.35■□□□□ 0.21
SLIRP-205ENST00000556310 PLCH1Q4KWH8 1693 aa16.35■□□□□ 0.21
SLIRP-205ENST00000556310 CACNB1Q02641 598 aaPredicted RBP16.35■□□□□ 0.21
SLIRP-205ENST00000556310 LMOD2Q6P5Q4 547 aa16.35■□□□□ 0.21
SLIRP-205ENST00000556310 CCER1Q8TC90 406 aaPredicted RBP16.35■□□□□ 0.21
SLIRP-205ENST00000556310 NGLY1Q96IV0 654 aa16.35■□□□□ 0.21
SLIRP-205ENST00000556310 NWD2Q9ULI1 1742 aa16.34■□□□□ 0.21
SLIRP-205ENST00000556310 ATAD2Q6PL18 1390 aa16.34■□□□□ 0.21
SLIRP-205ENST00000556310 FNBP4Q8N3X1 1017 aaPredicted RBP16.33■□□□□ 0.2
SLIRP-205ENST00000556310 BRD4O60885 1362 aaPredicted RBP16.32■□□□□ 0.2
SLIRP-205ENST00000556310 SLIT2O94813 1529 aa16.32■□□□□ 0.2
SLIRP-205ENST00000556310 HAP1P54257 671 aaPredicted RBP16.32■□□□□ 0.2
SLIRP-205ENST00000556310 POLA2Q14181 598 aa16.32■□□□□ 0.2
SLIRP-205ENST00000556310 NRKQ7Z2Y5 1582 aa16.32■□□□□ 0.2
SLIRP-205ENST00000556310 CDK12Q9NYV4 1490 aaPredicted RBP16.32■□□□□ 0.2
SLIRP-205ENST00000556310 MON2Q7Z3U7 1717 aa16.31■□□□□ 0.2
SLIRP-205ENST00000556310 USP6P35125 1406 aa16.31■□□□□ 0.2
SLIRP-205ENST00000556310 PAK3O75914 559 aaPredicted RBP16.31■□□□□ 0.2
SLIRP-205ENST00000556310 CABLES1Q8TDN4 633 aa16.31■□□□□ 0.2
SLIRP-205ENST00000556310 BCL9LQ86UU0 1499 aa16.3■□□□□ 0.2
SLIRP-205ENST00000556310 ATRNO75882 1429 aa16.3■□□□□ 0.2
SLIRP-205ENST00000556310 USP47Q96K76 1375 aa16.3■□□□□ 0.2
SLIRP-205ENST00000556310 ABCB7O75027 752 aa16.3■□□□□ 0.2
SLIRP-205ENST00000556310 CABP1Q9NZU7 370 aa16.3■□□□□ 0.2
SLIRP-205ENST00000556310 USP21Q9UK80 565 aa16.3■□□□□ 0.2
SLIRP-205ENST00000556310 COL14A1Q05707 1796 aaKnown RBP16.3■□□□□ 0.2
SLIRP-205ENST00000556310 NRAPQ86VF7 1730 aa16.29■□□□□ 0.2
SLIRP-205ENST00000556310 PIK3C2AO00443 1686 aa16.29■□□□□ 0.2
SLIRP-205ENST00000556310 PLEKHG5O94827 1062 aa16.28■□□□□ 0.2
SLIRP-205ENST00000556310 RXRBP28702 533 aa16.28■□□□□ 0.2
SLIRP-205ENST00000556310 SSH2Q76I76 1423 aa16.28■□□□□ 0.2
SLIRP-205ENST00000556310 ST20-MTHFSA0A0A6YYL1 179 aa16.27■□□□□ 0.2
SLIRP-205ENST00000556310 TESK2Q96S53 571 aa16.27■□□□□ 0.2
SLIRP-205ENST00000556310 QTRT2Q9H974 415 aaKnown RBP16.27■□□□□ 0.2
SLIRP-205ENST00000556310 TRPC5Q9UL62 973 aaPredicted RBP16.27■□□□□ 0.2
SLIRP-205ENST00000556310 CPSF1Q10570 1443 aaKnown RBP16.27■□□□□ 0.19
SLIRP-205ENST00000556310 RBM6P78332 1123 aaKnown RBP16.26■□□□□ 0.19
SLIRP-205ENST00000556310 RGS12O14924 1447 aa16.26■□□□□ 0.19
SLIRP-205ENST00000556310 USP19O94966 1318 aa16.25■□□□□ 0.19
SLIRP-205ENST00000556310 SLC24A1O60721 1099 aa16.25■□□□□ 0.19
SLIRP-205ENST00000556310 PUS7Q96PZ0 661 aaKnown RBP16.25■□□□□ 0.19
SLIRP-205ENST00000556310 CD163L1Q9NR16 1453 aa16.24■□□□□ 0.19
SLIRP-205ENST00000556310 SLIT3O75094 1523 aa16.24■□□□□ 0.19
SLIRP-205ENST00000556310 USP54Q70EL1 1684 aa16.24■□□□□ 0.19
SLIRP-205ENST00000556310 GLI3P10071 1580 aa16.23■□□□□ 0.19
SLIRP-205ENST00000556310 UNC5CLQ8IV45 518 aa16.23■□□□□ 0.19
SLIRP-205ENST00000556310 ABTB2Q8N961 1025 aa16.23■□□□□ 0.19
SLIRP-205ENST00000556310 ZNF692Q9BU19 519 aaPredicted RBP16.23■□□□□ 0.19
SLIRP-205ENST00000556310 NINLQ9Y2I6 1382 aa16.23■□□□□ 0.19
SLIRP-205ENST00000556310 NUTM2GQ5VZR2 741 aa16.22■□□□□ 0.19
SLIRP-205ENST00000556310 KTN1Q86UP2 1357 aaKnown RBP16.22■□□□□ 0.19
SLIRP-205ENST00000556310 FAM83GA6ND36 823 aa16.21■□□□□ 0.19
SLIRP-205ENST00000556310 KIAA0232Q92628 1395 aa16.21■□□□□ 0.19
SLIRP-205ENST00000556310 LMO7Q8WWI1 1683 aa16.21■□□□□ 0.18
SLIRP-205ENST00000556310 TTC21AQ8NDW8 1320 aa16.2■□□□□ 0.18
SLIRP-205ENST00000556310 NLRP13Q86W25 1043 aa16.2■□□□□ 0.18
SLIRP-205ENST00000556310 PRDM11Q9NQV5 511 aa16.2■□□□□ 0.18
SLIRP-205ENST00000556310 CPDO75976 1380 aa16.2■□□□□ 0.18
SLIRP-205ENST00000556310 TTC21BQ7Z4L5 1316 aa16.19■□□□□ 0.18
SLIRP-205ENST00000556310 TMC1Q8TDI8 760 aa16.19■□□□□ 0.18
SLIRP-205ENST00000556310 EDC4Q6P2E9 1401 aaKnown RBP16.19■□□□□ 0.18
SLIRP-205ENST00000556310 MYOM1P52179 1685 aa16.18■□□□□ 0.18
SLIRP-205ENST00000556310 A0A1W2PP64 1363 aa16.18■□□□□ 0.18
SLIRP-205ENST00000556310 DSG3P32926 999 aa16.18■□□□□ 0.18
SLIRP-205ENST00000556310 TMF1P82094 1093 aa16.18■□□□□ 0.18
SLIRP-205ENST00000556310 VPS72Q15906 364 aa16.18■□□□□ 0.18
SLIRP-205ENST00000556310 GJD4Q96KN9 370 aaPredicted RBP16.18■□□□□ 0.18
SLIRP-205ENST00000556310 NLRP6P59044 892 aa16.17■□□□□ 0.18
SLIRP-205ENST00000556310 HDGFL2Q7Z4V5 671 aaPredicted RBP16.17■□□□□ 0.18
SLIRP-205ENST00000556310 SLC12A5Q9H2X9 1139 aa16.17■□□□□ 0.18
SLIRP-205ENST00000556310 BTG4Q9NY30 223 aa16.17■□□□□ 0.18
SLIRP-205ENST00000556310 GCP02774 474 aa16.16■□□□□ 0.18
SLIRP-205ENST00000556310 ZC3H6P61129 1189 aaKnown RBP16.16■□□□□ 0.18
SLIRP-205ENST00000556310 FKBP8Q14318 412 aa16.16■□□□□ 0.18
SLIRP-205ENST00000556310 TERF2IPQ9NYB0 399 aa16.16■□□□□ 0.18
SLIRP-205ENST00000556310 NFAT5O94916 1531 aa16.15■□□□□ 0.18
SLIRP-205ENST00000556310 BRWD3Q6RI45 1802 aa16.15■□□□□ 0.18
SLIRP-205ENST00000556310 CHRNA2Q15822 529 aa16.14■□□□□ 0.17
SLIRP-205ENST00000556310 CDCA8Q53HL2 280 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms